Wall clock time and date at job start Sun Mar 29 2020 21:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00000 * 2 1 4 4 C 1.52993 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47161 * 184.99746 * 4 3 2 6 6 N 1.46901 * 109.47269 * 64.99883 * 4 3 2 7 7 C 1.46905 * 110.99870 * 84.99904 * 6 4 3 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00103 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99864 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99815 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47527 * 89.99455 * 12 10 8 14 14 H 1.48497 * 109.47120 * 209.99666 * 12 10 8 15 15 H 1.48499 * 109.47065 * 329.99353 * 12 10 8 16 16 C 1.53001 * 109.47245 * 304.99761 * 4 3 2 17 17 H 1.08994 * 110.32934 * 302.25234 * 16 4 3 18 18 C 1.54478 * 110.37212 * 179.97438 * 16 4 3 19 19 C 1.54512 * 104.06308 * 217.19251 * 18 16 4 20 20 C 1.54480 * 104.06359 * 0.02562 * 19 18 16 21 21 O 1.44422 * 104.80001 * 23.97750 * 20 19 18 22 22 H 1.08992 * 109.47622 * 299.99920 * 1 2 3 23 23 H 1.08998 * 109.47318 * 60.00408 * 1 2 3 24 24 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46894 * 59.99827 * 3 2 1 26 26 H 1.08999 * 109.46806 * 299.99906 * 3 2 1 27 27 H 1.00901 * 111.00067 * 208.95080 * 6 4 3 28 28 H 1.09001 * 109.46798 * 300.00327 * 7 6 4 29 29 H 1.08998 * 109.46961 * 60.00043 * 7 6 4 30 30 H 0.97004 * 119.99699 * 180.02562 * 11 10 8 31 31 H 1.09000 * 110.51473 * 335.83986 * 18 16 4 32 32 H 1.09004 * 110.50977 * 98.55103 * 18 16 4 33 33 H 1.08998 * 110.51321 * 118.65098 * 19 18 16 34 34 H 1.08998 * 110.50732 * 241.35641 * 19 18 16 35 35 H 1.08996 * 110.36765 * 142.80766 * 20 19 18 36 36 H 1.08994 * 110.37153 * 265.04158 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.9783 2.1767 0.0902 6 7 3.9778 0.5624 -1.2543 7 6 4.1207 1.5657 -2.3178 8 6 4.5743 0.8914 -3.5868 9 1 4.7395 -0.1758 -3.6020 10 6 4.7774 1.6368 -4.7289 11 7 5.1738 1.0483 -5.8363 12 14 4.4909 3.4824 -4.7029 13 1 5.7502 4.1736 -4.3265 14 1 4.0610 3.9357 -6.0500 15 1 3.4337 3.8053 -3.7113 16 6 3.9780 0.3200 1.1826 17 1 3.6223 0.7485 2.1195 18 6 5.5166 0.1837 1.2028 19 6 5.7587 -1.2702 1.6664 20 6 4.3377 -1.8406 1.8709 21 8 3.4902 -1.0308 1.0272 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8463 -0.8900 27 1 4.8378 0.0517 -1.1211 28 1 3.1608 2.0531 -2.4887 29 1 4.8580 2.3104 -2.0180 30 1 5.3170 1.5728 -6.6396 31 1 5.9270 0.3398 0.2051 32 1 5.9532 0.8880 1.9109 33 1 6.2888 -1.8329 0.8980 34 1 6.3149 -1.2845 2.6037 35 1 4.2990 -2.8839 1.5579 36 1 4.0377 -1.7467 2.9145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591764229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:25 Heat of formation + Delta-G solvation = -107.752617 kcal Electronic energy + Delta-G solvation = -16955.788427 eV Core-core repulsion = 14246.402143 eV Total energy + Delta-G solvation = -2709.386284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60982 -38.51675 -36.82602 -34.66191 -32.77418 -31.91857 -28.91415 -28.38857 -26.70334 -24.31244 -23.24331 -22.10606 -21.10361 -18.99789 -17.62434 -17.37041 -17.08108 -16.37187 -16.06707 -16.02830 -15.66400 -15.29480 -14.92167 -14.44509 -14.20866 -13.98984 -13.47956 -13.14578 -13.00522 -12.67594 -12.49313 -12.17328 -12.11818 -12.00045 -11.79851 -11.61467 -11.34476 -11.29900 -10.82094 -10.43784 -10.33507 -9.00550 -8.29801 -6.34061 1.32657 1.35927 1.47063 2.33712 2.98646 3.04061 3.16602 3.52698 3.68064 3.85400 4.08298 4.22387 4.27541 4.40518 4.47515 4.55971 4.62201 4.63872 4.69935 4.79458 4.83923 4.85776 4.92341 4.96976 5.01999 5.07902 5.16772 5.24962 5.54664 5.96330 6.19173 6.50867 6.63133 6.71903 6.81568 7.30645 8.87439 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.008111 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.349395 B = 3451.390490 C = 4030.880261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.375 6.375 3 C 0.075 3.925 4 C 0.081 3.919 5 H 0.073 0.927 6 N -0.671 5.671 7 C 0.176 3.824 8 C -0.525 4.525 9 H 0.031 0.969 10 C 0.006 3.994 11 N -0.949 5.949 12 Si 0.954 3.046 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.250 1.250 16 C 0.083 3.917 17 H 0.088 0.912 18 C -0.158 4.158 19 C -0.148 4.148 20 C 0.033 3.967 21 O -0.359 6.359 22 H 0.053 0.947 23 H 0.030 0.970 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.336 0.664 28 H 0.021 0.979 29 H -0.012 1.012 30 H 0.267 0.733 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 1.621 19.294 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.294 6.294 3 C -0.002 4.002 4 C -0.029 4.029 5 H 0.091 0.909 6 N -0.304 5.304 7 C 0.048 3.952 8 C -0.564 4.564 9 H 0.049 0.951 10 C -0.192 4.192 11 N -0.590 5.590 12 Si 0.777 3.223 13 H -0.188 1.188 14 H -0.207 1.207 15 H -0.174 1.174 16 C 0.025 3.975 17 H 0.106 0.894 18 C -0.196 4.196 19 C -0.185 4.185 20 C -0.044 4.044 21 O -0.277 6.277 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.157 0.843 28 H 0.039 0.961 29 H 0.005 0.995 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.145 1.214 18.793 19.283 hybrid contribution 0.768 1.152 -0.456 1.458 sum -3.377 2.366 18.337 18.795 Atomic orbital electron populations 1.22807 0.81618 1.02868 0.99749 1.88162 1.19191 1.26893 1.95112 1.22521 0.93089 0.85322 0.99318 1.21855 0.94712 0.96522 0.89856 0.90900 1.60239 1.37900 1.27199 1.05092 1.19809 0.94558 0.90760 0.90081 1.21323 1.44739 0.95012 0.95300 0.95072 1.25926 0.94271 1.04321 0.94642 1.70069 1.48458 1.38348 1.02080 0.85620 0.79781 0.78851 0.78080 1.18757 1.20655 1.17389 1.23071 0.92813 0.84985 0.96635 0.89401 1.23086 0.95793 0.98568 1.02200 1.22897 0.97981 0.94974 1.02671 1.23548 0.89202 0.96339 0.95333 1.89462 1.54581 1.17102 1.66561 0.92897 0.95173 0.89507 0.91224 0.95289 0.84349 0.96090 0.99492 0.92385 0.92573 0.88312 0.91700 0.88329 0.89566 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.38 -13.48 8.65 -128.36 -1.11 -14.59 16 3 C 0.08 2.45 5.69 71.98 0.41 2.86 16 4 C 0.08 2.72 2.37 44.91 0.11 2.83 16 5 H 0.07 2.23 7.80 -2.39 -0.02 2.21 16 6 N -0.67 -29.46 6.04 -495.58 -2.99 -32.45 16 7 C 0.18 8.75 4.31 85.55 0.37 9.12 16 8 C -0.53 -31.79 9.87 25.60 0.25 -31.54 16 9 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 10 C 0.01 0.33 5.47 84.66 0.46 0.79 16 11 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 12 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 16 C 0.08 2.33 2.98 31.10 0.09 2.42 16 17 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 18 C -0.16 -3.90 6.30 31.61 0.20 -3.70 16 19 C -0.15 -3.20 7.09 31.61 0.22 -2.98 16 20 C 0.03 0.78 7.63 72.49 0.55 1.34 16 21 O -0.36 -11.79 9.29 -128.36 -1.19 -12.98 16 22 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.03 1.04 7.35 -2.39 -0.02 1.02 16 27 H 0.34 14.80 6.24 -89.69 -0.56 14.24 16 28 H 0.02 1.06 6.42 -2.39 -0.02 1.04 16 29 H -0.01 -0.58 7.48 -2.39 -0.02 -0.60 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.06 1.67 6.13 -2.39 -0.01 1.66 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.66 288.10 1.24 -71.42 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.43 Total: 19.38 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.92 Total: -16.90 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -2.69 Total: -93.05 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -2.30 Total: -27.56 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -72.66 1.24 -71.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.333 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds