Wall clock time and date at job start Sun Mar 29 2020 21:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00435 * 2 1 4 4 C 1.52996 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47430 * 185.00038 * 4 3 2 6 6 N 1.46896 * 109.47465 * 64.99113 * 4 3 2 7 7 C 1.46906 * 110.99608 * 86.25990 * 6 4 3 8 8 C 1.50703 * 109.47194 * 174.71226 * 7 6 4 9 9 H 1.07997 * 119.99993 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99897 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00023 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00135 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47168 * 89.99878 * 12 10 8 14 14 H 1.48497 * 109.47110 * 210.00246 * 12 10 8 15 15 H 1.48505 * 109.47057 * 330.00103 * 12 10 8 16 16 C 1.53005 * 109.46813 * 304.99631 * 4 3 2 17 17 H 1.09005 * 109.86976 * 60.93550 * 16 4 3 18 18 C 1.54097 * 109.87830 * 181.94247 * 16 4 3 19 19 C 1.54813 * 104.18920 * 121.45814 * 18 16 4 20 20 C 1.54989 * 102.09266 * 20.87870 * 19 18 16 21 21 O 1.43740 * 109.87824 * 299.77275 * 16 4 3 22 22 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46672 * 300.00235 * 1 2 3 24 24 H 1.08994 * 109.47092 * 59.99986 * 1 2 3 25 25 H 1.09002 * 109.47205 * 59.99696 * 3 2 1 26 26 H 1.09000 * 109.46659 * 300.00238 * 3 2 1 27 27 H 1.00901 * 111.00260 * 322.31221 * 6 4 3 28 28 H 1.08993 * 109.47546 * 294.71605 * 7 6 4 29 29 H 1.09003 * 109.47007 * 54.71635 * 7 6 4 30 30 H 0.96999 * 120.00172 * 180.02562 * 11 10 8 31 31 H 1.09004 * 110.48845 * 240.13011 * 18 16 4 32 32 H 1.09006 * 110.48898 * 2.77463 * 18 16 4 33 33 H 1.08995 * 110.90793 * 139.08039 * 19 18 16 34 34 H 1.09000 * 110.90152 * 262.64583 * 19 18 16 35 35 H 1.08995 * 110.62144 * 81.48200 * 20 19 18 36 36 H 1.08999 * 110.61890 * 204.32668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 7 3.9769 0.5625 -1.2560 7 6 4.1477 1.5702 -2.3112 8 6 4.7233 0.9169 -3.5413 9 1 4.9401 -0.1411 -3.5395 10 6 4.9731 1.6699 -4.6690 11 7 5.4749 1.0998 -5.7426 12 14 4.5988 3.5000 -4.6718 13 1 5.7936 4.2504 -4.2086 14 1 4.2464 3.9310 -6.0485 15 1 3.4586 3.7735 -3.7604 16 6 3.9790 0.3193 1.1808 17 1 3.5527 -0.6797 1.0890 18 6 5.5170 0.2314 1.2175 19 6 5.8961 0.7946 2.6088 20 6 4.5722 0.6299 3.3976 21 8 3.5559 0.9230 2.4147 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6887 1.8464 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.3355 -0.1602 -1.5466 28 1 3.1806 2.0110 -2.5528 29 1 4.8255 2.3496 -1.9630 30 1 5.6510 1.6296 -6.5358 31 1 5.8422 -0.8048 1.1240 32 1 5.9531 0.8420 0.4269 33 1 6.6946 0.2070 3.0619 34 1 6.1800 1.8447 2.5391 35 1 4.4683 -0.3912 3.7644 36 1 4.5266 1.3397 4.2236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591764230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:27 Heat of formation + Delta-G solvation = -93.794849 kcal Electronic energy + Delta-G solvation = -16755.176898 eV Core-core repulsion = 14046.395868 eV Total energy + Delta-G solvation = -2708.781030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45867 -37.66806 -35.34490 -32.59596 -31.75935 -30.26947 -27.82291 -26.60477 -25.48646 -23.02939 -21.38935 -21.07547 -20.12743 -16.83448 -16.43245 -16.14432 -15.75069 -15.22549 -15.15871 -14.87787 -14.27974 -13.55491 -13.33115 -13.10296 -12.80152 -12.35198 -12.15017 -11.74824 -11.55182 -11.41304 -11.11513 -10.99248 -10.77084 -10.55222 -10.42393 -10.29257 -9.89827 -9.54302 -9.34870 -9.19283 -8.58196 -7.45266 -6.04989 -4.02461 3.27995 3.35364 3.37061 3.88761 4.13563 4.41857 4.85577 4.96011 5.12000 5.17099 5.26927 5.29951 5.35175 5.47182 5.48558 5.56896 5.74507 5.74666 5.81920 5.84984 5.87514 5.98029 6.12561 6.26429 6.34008 6.62389 6.75165 7.00277 7.19083 7.34360 7.61332 7.90286 8.37215 8.66068 9.04730 9.56914 11.08368 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024070 B = 0.007711 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.003719 B = 3630.082233 C = 4291.034500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.035 3.965 4 C 0.092 3.908 5 H 0.086 0.914 6 N -0.668 5.668 7 C 0.166 3.834 8 C -0.512 4.512 9 H 0.080 0.920 10 C 0.068 3.932 11 N -0.900 5.900 12 Si 0.876 3.124 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.269 1.269 16 C 0.094 3.906 17 H 0.074 0.926 18 C -0.138 4.138 19 C -0.159 4.159 20 C 0.048 3.952 21 O -0.380 6.380 22 H 0.082 0.918 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.347 0.653 28 H -0.017 1.017 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 0.318 16.084 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C -0.044 4.044 4 C -0.019 4.019 5 H 0.104 0.896 6 N -0.300 5.300 7 C 0.038 3.962 8 C -0.550 4.550 9 H 0.098 0.902 10 C -0.133 4.133 11 N -0.539 5.539 12 Si 0.703 3.297 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.193 1.193 16 C 0.036 3.964 17 H 0.092 0.908 18 C -0.176 4.176 19 C -0.197 4.197 20 C -0.029 4.029 21 O -0.298 6.298 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.166 0.834 28 H 0.001 0.999 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.502 0.310 16.089 16.710 hybrid contribution -1.119 1.375 -0.409 1.820 sum -5.621 1.685 15.680 16.742 Atomic orbital electron populations 1.22670 0.81723 1.02284 0.99541 1.87834 1.19100 1.27920 1.95292 1.23262 0.96298 0.84808 0.99991 1.21735 0.90060 0.98247 0.91875 0.89563 1.60303 1.52420 1.14641 1.02609 1.20042 0.94562 0.91284 0.90307 1.21040 1.41476 0.97875 0.94611 0.90158 1.24898 0.94846 0.98187 0.95407 1.69897 1.44651 1.36093 1.03294 0.86857 0.79189 0.86288 0.77365 1.20162 1.21213 1.19342 1.22563 0.93715 0.96600 0.83501 0.90795 1.22838 0.95457 1.02408 0.96859 1.23179 0.97911 1.01994 0.96613 1.23462 0.86990 1.00187 0.92263 1.88807 1.44507 1.76785 1.19735 0.89934 0.94557 0.94374 0.93039 0.93457 0.83447 0.99898 0.96130 0.92677 0.90939 0.89152 0.90750 0.90901 0.92658 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.31 9.22 -35.23 -0.32 -6.63 16 3 C 0.03 0.58 5.40 37.16 0.20 0.78 16 4 C 0.09 1.64 2.01 -67.71 -0.14 1.50 16 5 H 0.09 1.55 7.69 -51.93 -0.40 1.15 16 6 N -0.67 -13.93 5.72 -107.99 -0.62 -14.55 16 7 C 0.17 4.01 4.33 -4.97 -0.02 3.99 16 8 C -0.51 -14.66 9.92 -34.44 -0.34 -15.01 16 9 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 12 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 16 C 0.09 1.51 2.95 -26.16 -0.08 1.44 16 17 H 0.07 1.25 7.61 -51.93 -0.40 0.86 16 18 C -0.14 -2.04 6.38 -25.20 -0.16 -2.20 16 19 C -0.16 -1.89 7.15 -24.73 -0.18 -2.07 16 20 C 0.05 0.57 7.72 38.21 0.29 0.86 16 21 O -0.38 -5.85 10.64 -35.23 -0.38 -6.23 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.80 7.86 -51.93 -0.41 0.40 16 26 H 0.05 0.82 7.53 -51.93 -0.39 0.43 16 27 H 0.35 7.37 7.97 -39.29 -0.31 7.05 16 28 H -0.02 -0.41 6.62 -51.93 -0.34 -0.75 16 29 H 0.02 0.50 7.35 -51.93 -0.38 0.12 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.52 7.53 -51.93 -0.39 1.13 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -30.81 291.76 -6.21 -37.03 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.99 Total: 3.30 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 0.60 Total: -7.27 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.16 Total: -41.53 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.70 Total: -12.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.81 -6.21 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.768 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds