Wall clock time and date at job start Sun Mar 29 2020 21:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00435 * 2 1 4 4 C 1.52996 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47430 * 185.00038 * 4 3 2 6 6 N 1.46896 * 109.47465 * 64.99113 * 4 3 2 7 7 C 1.46906 * 110.99608 * 86.25990 * 6 4 3 8 8 C 1.50703 * 109.47194 * 174.71226 * 7 6 4 9 9 H 1.07997 * 119.99993 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99897 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00023 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00135 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47168 * 89.99878 * 12 10 8 14 14 H 1.48497 * 109.47110 * 210.00246 * 12 10 8 15 15 H 1.48505 * 109.47057 * 330.00103 * 12 10 8 16 16 C 1.53005 * 109.46813 * 304.99631 * 4 3 2 17 17 H 1.09005 * 109.86976 * 60.93550 * 16 4 3 18 18 C 1.54097 * 109.87830 * 181.94247 * 16 4 3 19 19 C 1.54813 * 104.18920 * 121.45814 * 18 16 4 20 20 C 1.54989 * 102.09266 * 20.87870 * 19 18 16 21 21 O 1.43740 * 109.87824 * 299.77275 * 16 4 3 22 22 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46672 * 300.00235 * 1 2 3 24 24 H 1.08994 * 109.47092 * 59.99986 * 1 2 3 25 25 H 1.09002 * 109.47205 * 59.99696 * 3 2 1 26 26 H 1.09000 * 109.46659 * 300.00238 * 3 2 1 27 27 H 1.00901 * 111.00260 * 322.31221 * 6 4 3 28 28 H 1.08993 * 109.47546 * 294.71605 * 7 6 4 29 29 H 1.09003 * 109.47007 * 54.71635 * 7 6 4 30 30 H 0.96999 * 120.00172 * 180.02562 * 11 10 8 31 31 H 1.09004 * 110.48845 * 240.13011 * 18 16 4 32 32 H 1.09006 * 110.48898 * 2.77463 * 18 16 4 33 33 H 1.08995 * 110.90793 * 139.08039 * 19 18 16 34 34 H 1.09000 * 110.90152 * 262.64583 * 19 18 16 35 35 H 1.08995 * 110.62144 * 81.48200 * 20 19 18 36 36 H 1.08999 * 110.61890 * 204.32668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 7 3.9769 0.5625 -1.2560 7 6 4.1477 1.5702 -2.3112 8 6 4.7233 0.9169 -3.5413 9 1 4.9401 -0.1411 -3.5395 10 6 4.9731 1.6699 -4.6690 11 7 5.4749 1.0998 -5.7426 12 14 4.5988 3.5000 -4.6718 13 1 5.7936 4.2504 -4.2086 14 1 4.2464 3.9310 -6.0485 15 1 3.4586 3.7735 -3.7604 16 6 3.9790 0.3193 1.1808 17 1 3.5527 -0.6797 1.0890 18 6 5.5170 0.2314 1.2175 19 6 5.8961 0.7946 2.6088 20 6 4.5722 0.6299 3.3976 21 8 3.5559 0.9230 2.4147 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6887 1.8464 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.3355 -0.1602 -1.5466 28 1 3.1806 2.0110 -2.5528 29 1 4.8255 2.3496 -1.9630 30 1 5.6510 1.6296 -6.5358 31 1 5.8422 -0.8048 1.1240 32 1 5.9531 0.8420 0.4269 33 1 6.6946 0.2070 3.0619 34 1 6.1800 1.8447 2.5391 35 1 4.4683 -0.3912 3.7644 36 1 4.5266 1.3397 4.2236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591764230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:27 Heat of formation + Delta-G solvation = -116.944226 kcal Electronic energy + Delta-G solvation = -16756.180730 eV Core-core repulsion = 14046.395868 eV Total energy + Delta-G solvation = -2709.784862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66506 -38.89348 -36.92731 -34.68332 -32.86587 -31.91161 -29.01616 -28.30409 -26.75412 -24.34891 -23.03725 -22.40159 -21.47858 -18.95194 -17.71987 -17.28169 -16.99649 -16.74834 -16.38593 -16.07062 -16.03050 -15.21385 -14.68627 -14.45268 -14.37171 -13.98056 -13.49080 -13.23718 -13.06877 -12.64385 -12.50944 -12.30202 -12.21766 -12.01453 -11.86551 -11.71494 -11.56487 -11.38246 -10.81287 -10.70142 -10.47096 -9.13845 -8.29476 -6.33544 1.34245 1.35582 1.46281 2.33510 2.66532 2.99748 3.04240 3.69757 3.74274 3.80609 4.06804 4.15040 4.17313 4.37001 4.43609 4.50771 4.52959 4.60900 4.66442 4.75580 4.79646 4.81614 4.91789 5.03258 5.05223 5.12456 5.21894 5.38965 5.51794 5.91287 6.07684 6.19306 6.56199 6.63848 6.75447 7.30805 8.87372 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024070 B = 0.007711 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.003719 B = 3630.082233 C = 4291.034500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.042 3.958 4 C 0.090 3.910 5 H 0.085 0.915 6 N -0.671 5.671 7 C 0.179 3.821 8 C -0.524 4.524 9 H 0.037 0.963 10 C 0.009 3.991 11 N -0.947 5.947 12 Si 0.948 3.052 13 H -0.264 1.264 14 H -0.281 1.281 15 H -0.251 1.251 16 C 0.103 3.897 17 H 0.062 0.938 18 C -0.141 4.141 19 C -0.151 4.151 20 C 0.043 3.957 21 O -0.393 6.393 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.342 0.658 28 H -0.015 1.015 29 H 0.026 0.974 30 H 0.267 0.733 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 1.742 18.054 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.036 4.036 4 C -0.021 4.021 5 H 0.103 0.897 6 N -0.302 5.302 7 C 0.051 3.949 8 C -0.562 4.562 9 H 0.056 0.944 10 C -0.189 4.189 11 N -0.588 5.588 12 Si 0.772 3.228 13 H -0.189 1.189 14 H -0.206 1.206 15 H -0.175 1.175 16 C 0.045 3.955 17 H 0.080 0.920 18 C -0.179 4.179 19 C -0.188 4.188 20 C -0.033 4.033 21 O -0.312 6.312 22 H 0.118 0.882 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.161 0.839 28 H 0.003 0.997 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.176 1.725 18.094 18.899 hybrid contribution -0.918 0.809 -0.977 1.565 sum -6.094 2.533 17.117 18.345 Atomic orbital electron populations 1.22889 0.79767 1.03768 1.00366 1.87807 1.21275 1.27767 1.95423 1.23104 0.95297 0.85100 1.00109 1.21772 0.91231 0.98244 0.90830 0.89728 1.60188 1.53054 1.14032 1.02973 1.19768 0.94133 0.91564 0.89474 1.21294 1.41743 0.96302 0.96864 0.94449 1.25854 0.94466 1.03831 0.94738 1.70051 1.46069 1.38414 1.04236 0.85699 0.79860 0.79347 0.77929 1.18909 1.20631 1.17526 1.22325 0.94255 0.95480 0.83469 0.91960 1.22809 0.94647 1.02271 0.98153 1.23162 0.98745 1.02346 0.94580 1.23724 0.85829 1.01739 0.91990 1.88778 1.45837 1.76806 1.19820 0.88239 0.93020 0.94187 0.91698 0.94384 0.83944 0.99721 0.95607 0.92367 0.90819 0.91553 0.88480 0.90656 0.91453 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -12.89 9.22 -148.98 -1.37 -14.26 16 3 C 0.04 1.35 5.40 71.98 0.39 1.74 16 4 C 0.09 3.13 2.01 44.92 0.09 3.22 16 5 H 0.08 2.96 7.69 -2.39 -0.02 2.94 16 6 N -0.67 -28.27 5.72 -495.57 -2.84 -31.10 16 7 C 0.18 8.65 4.33 85.56 0.37 9.02 16 8 C -0.52 -30.77 9.92 25.60 0.25 -30.51 16 9 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 10 C 0.01 0.50 5.47 84.66 0.46 0.97 16 11 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 12 Si 0.95 44.22 27.47 68.60 1.88 46.11 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 16 C 0.10 3.21 2.95 30.97 0.09 3.30 16 17 H 0.06 2.09 7.61 -2.38 -0.02 2.07 16 18 C -0.14 -4.06 6.38 31.58 0.20 -3.86 16 19 C -0.15 -3.21 7.15 31.89 0.23 -2.99 16 20 C 0.04 0.90 7.72 72.66 0.56 1.46 16 21 O -0.39 -11.30 10.64 -148.98 -1.59 -12.88 16 22 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.90 7.86 -2.39 -0.02 1.88 16 26 H 0.04 1.27 7.53 -2.39 -0.02 1.26 16 27 H 0.34 14.86 7.97 -89.69 -0.71 14.15 16 28 H -0.01 -0.71 6.62 -2.39 -0.02 -0.73 16 29 H 0.03 1.23 7.35 -2.39 -0.02 1.21 16 30 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.23 7.53 -2.38 -0.02 2.21 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -66.87 291.76 0.56 -66.31 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.28 Total: 20.95 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 3.90 Total: -15.73 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -2.54 Total: -90.49 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -2.96 Total: -27.15 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Total: -66.87 0.56 -66.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.637 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds