Wall clock time and date at job start Sun Mar 29 2020 21:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00361 * 2 1 4 4 C 1.52997 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47089 * 175.00040 * 4 3 2 6 6 N 1.46895 * 109.47522 * 295.00661 * 4 3 2 7 7 C 1.46904 * 111.00014 * 274.99938 * 6 4 3 8 8 C 1.50701 * 109.47195 * 180.02562 * 7 6 4 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27796 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48504 * 109.47209 * 89.99886 * 12 10 8 14 14 H 1.48501 * 109.47358 * 209.99377 * 12 10 8 15 15 H 1.48496 * 109.47341 * 329.99989 * 12 10 8 16 16 C 1.53008 * 109.46807 * 55.00777 * 4 3 2 17 17 H 1.08998 * 109.81841 * 300.56297 * 16 4 3 18 18 C 1.54381 * 109.82741 * 179.58624 * 16 4 3 19 19 C 1.55311 * 102.24974 * 219.12550 * 18 16 4 20 20 C 1.54950 * 100.94138 * 34.13592 * 19 18 16 21 21 O 1.43234 * 109.83101 * 61.45023 * 16 4 3 22 22 H 1.08999 * 109.46679 * 299.99438 * 1 2 3 23 23 H 1.09001 * 109.46865 * 59.99298 * 1 2 3 24 24 H 1.08993 * 109.47236 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46530 * 60.00042 * 3 2 1 26 26 H 1.08991 * 109.47324 * 300.00792 * 3 2 1 27 27 H 1.00903 * 111.00189 * 151.04673 * 6 4 3 28 28 H 1.09000 * 109.47038 * 59.99386 * 7 6 4 29 29 H 1.09007 * 109.46566 * 299.99918 * 7 6 4 30 30 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 31 31 H 1.08998 * 110.85261 * 337.31670 * 18 16 4 32 32 H 1.09002 * 110.84928 * 100.94050 * 18 16 4 33 33 H 1.08999 * 111.12219 * 276.21583 * 19 18 16 34 34 H 1.08999 * 111.11996 * 152.05104 * 19 18 16 35 35 H 1.09000 * 110.30845 * 204.63889 * 20 19 18 36 36 H 1.08997 * 110.39040 * 82.51019 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0889 6 7 3.9769 0.5625 1.2560 7 6 4.1190 1.5661 2.3194 8 6 4.5729 0.8923 3.5887 9 1 4.7387 -0.1748 3.6040 10 6 4.7703 1.6372 4.7319 11 7 4.5680 2.9366 4.7133 12 14 5.3253 0.8009 6.3073 13 1 6.8092 0.7823 6.3616 14 1 4.7966 1.5476 7.4770 15 1 4.8115 -0.5920 6.3358 16 6 3.9790 0.3194 -1.1808 17 1 3.5309 -0.6711 -1.1023 18 6 5.5181 0.2005 -1.1941 19 6 5.8418 0.2813 -2.7110 20 6 4.7415 1.2592 -3.1948 21 8 3.5818 0.9363 -2.4110 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8464 -0.8898 27 1 4.8370 0.0518 1.1236 28 1 3.1591 2.0537 2.4894 29 1 4.8567 2.3107 2.0199 30 1 4.7066 3.4606 5.5177 31 1 5.9760 1.0298 -0.6551 32 1 5.8370 -0.7560 -0.7800 33 1 5.7381 -0.6936 -3.1873 34 1 6.8363 0.6948 -2.8789 35 1 4.5371 1.1045 -4.2543 36 1 5.0444 2.2907 -3.0152 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591764231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:29 Heat of formation + Delta-G solvation = -96.639774 kcal Electronic energy + Delta-G solvation = -16702.940665 eV Core-core repulsion = 13994.036270 eV Total energy + Delta-G solvation = -2708.904395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.54419 -37.29551 -35.21562 -32.65052 -31.89898 -29.93401 -27.81817 -26.23597 -25.28613 -23.06764 -21.47869 -21.38156 -19.74533 -16.81241 -16.59193 -15.92914 -15.67661 -15.20025 -14.89303 -14.47560 -14.03795 -13.95734 -13.29662 -12.62967 -12.60057 -12.43296 -11.98125 -11.70682 -11.45907 -11.27116 -11.14368 -11.00710 -10.78246 -10.64000 -10.58581 -10.21132 -9.95222 -9.30641 -9.11656 -8.96547 -8.47650 -7.25607 -6.02426 -4.03967 3.32404 3.38545 3.43792 3.95141 4.36510 4.44897 4.61057 4.88194 4.93641 5.25437 5.32056 5.34083 5.38773 5.57961 5.67082 5.72451 5.75067 5.81641 5.83384 5.95506 5.97548 6.02884 6.12818 6.20866 6.34700 6.55049 7.19577 7.27409 7.41434 7.70730 7.82633 8.14243 8.41993 8.62287 9.05493 9.60861 11.08780 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.007051 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.316051 B = 3970.381076 C = 4674.137911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.371 6.371 3 C 0.083 3.917 4 C 0.081 3.919 5 H 0.049 0.951 6 N -0.672 5.672 7 C 0.195 3.805 8 C -0.511 4.511 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.899 3.101 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.272 1.272 16 C 0.087 3.913 17 H 0.095 0.905 18 C -0.156 4.156 19 C -0.155 4.155 20 C 0.049 3.951 21 O -0.378 6.378 22 H 0.036 0.964 23 H 0.031 0.969 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.329 0.671 28 H 0.028 0.972 29 H -0.015 1.015 30 H 0.261 0.739 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 -3.618 -13.852 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.289 6.289 3 C 0.005 3.995 4 C -0.030 4.030 5 H 0.067 0.933 6 N -0.306 5.306 7 C 0.069 3.931 8 C -0.550 4.550 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.727 3.273 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.197 1.197 16 C 0.029 3.971 17 H 0.113 0.887 18 C -0.194 4.194 19 C -0.192 4.192 20 C -0.028 4.028 21 O -0.296 6.296 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.147 0.853 28 H 0.046 0.954 29 H 0.003 0.997 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.723 -3.759 -13.604 14.219 hybrid contribution 1.107 0.475 0.785 1.438 sum -0.615 -3.284 -12.819 13.248 Atomic orbital electron populations 1.22628 0.82669 1.01836 0.99197 1.87918 1.18052 1.27816 1.95153 1.22439 0.93449 0.84549 0.99026 1.21823 0.94074 0.96524 0.90601 0.93304 1.60641 1.36940 1.28991 1.03987 1.19615 0.95941 0.89211 0.88366 1.21181 1.44610 0.94688 0.94537 0.91887 1.24985 0.95697 0.94827 0.99085 1.69961 1.49651 1.05397 1.28852 0.86484 0.78638 0.79592 0.82615 1.20758 1.21269 1.19729 1.22832 0.93221 0.97301 0.83760 0.88693 1.23236 0.96075 1.03738 0.96329 1.23238 0.99582 1.00392 0.96019 1.23339 0.85771 0.97912 0.95759 1.88419 1.29858 1.80770 1.30571 0.94505 0.95059 0.90375 0.93292 0.93843 0.85272 0.95430 0.99740 0.92944 0.90384 0.89597 0.90539 0.90237 0.90200 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -6.97 9.77 -35.23 -0.34 -7.31 16 3 C 0.08 1.55 5.50 37.16 0.20 1.76 16 4 C 0.08 1.54 2.08 -67.71 -0.14 1.39 16 5 H 0.05 0.97 7.80 -51.93 -0.40 0.56 16 6 N -0.67 -14.81 6.25 -107.99 -0.67 -15.48 16 7 C 0.20 5.17 5.24 -4.97 -0.03 5.14 16 8 C -0.51 -14.63 9.32 -34.44 -0.32 -14.96 16 9 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 12 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.09 1.40 3.02 -26.00 -0.08 1.32 16 17 H 0.10 1.64 7.56 -51.93 -0.39 1.25 16 18 C -0.16 -2.14 5.23 -24.78 -0.13 -2.27 16 19 C -0.15 -1.70 7.16 -24.48 -0.18 -1.88 16 20 C 0.05 0.59 7.78 38.19 0.30 0.89 16 21 O -0.38 -5.96 10.52 -35.23 -0.37 -6.34 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.99 7.35 -51.93 -0.38 0.61 16 26 H 0.04 0.75 7.89 -51.93 -0.41 0.34 16 27 H 0.33 6.82 7.14 -39.29 -0.28 6.53 16 28 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 29 H -0.02 -0.42 8.06 -51.93 -0.42 -0.84 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 32 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -31.33 294.71 -6.59 -37.92 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.00 Total: 1.71 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 0.65 Total: -5.49 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.06 Total: -41.76 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.71 Total: -13.65 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.33 -6.59 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.723 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds