Wall clock time and date at job start Sun Mar 29 2020 21:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00361 * 2 1 4 4 C 1.52997 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47089 * 175.00040 * 4 3 2 6 6 N 1.46895 * 109.47522 * 295.00661 * 4 3 2 7 7 C 1.46904 * 111.00014 * 274.99938 * 6 4 3 8 8 C 1.50701 * 109.47195 * 180.02562 * 7 6 4 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27796 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48504 * 109.47209 * 89.99886 * 12 10 8 14 14 H 1.48501 * 109.47358 * 209.99377 * 12 10 8 15 15 H 1.48496 * 109.47341 * 329.99989 * 12 10 8 16 16 C 1.53008 * 109.46807 * 55.00777 * 4 3 2 17 17 H 1.08998 * 109.81841 * 300.56297 * 16 4 3 18 18 C 1.54381 * 109.82741 * 179.58624 * 16 4 3 19 19 C 1.55311 * 102.24974 * 219.12550 * 18 16 4 20 20 C 1.54950 * 100.94138 * 34.13592 * 19 18 16 21 21 O 1.43234 * 109.83101 * 61.45023 * 16 4 3 22 22 H 1.08999 * 109.46679 * 299.99438 * 1 2 3 23 23 H 1.09001 * 109.46865 * 59.99298 * 1 2 3 24 24 H 1.08993 * 109.47236 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46530 * 60.00042 * 3 2 1 26 26 H 1.08991 * 109.47324 * 300.00792 * 3 2 1 27 27 H 1.00903 * 111.00189 * 151.04673 * 6 4 3 28 28 H 1.09000 * 109.47038 * 59.99386 * 7 6 4 29 29 H 1.09007 * 109.46566 * 299.99918 * 7 6 4 30 30 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 31 31 H 1.08998 * 110.85261 * 337.31670 * 18 16 4 32 32 H 1.09002 * 110.84928 * 100.94050 * 18 16 4 33 33 H 1.08999 * 111.12219 * 276.21583 * 19 18 16 34 34 H 1.08999 * 111.11996 * 152.05104 * 19 18 16 35 35 H 1.09000 * 110.30845 * 204.63889 * 20 19 18 36 36 H 1.08997 * 110.39040 * 82.51019 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0889 6 7 3.9769 0.5625 1.2560 7 6 4.1190 1.5661 2.3194 8 6 4.5729 0.8923 3.5887 9 1 4.7387 -0.1748 3.6040 10 6 4.7703 1.6372 4.7319 11 7 4.5680 2.9366 4.7133 12 14 5.3253 0.8009 6.3073 13 1 6.8092 0.7823 6.3616 14 1 4.7966 1.5476 7.4770 15 1 4.8115 -0.5920 6.3358 16 6 3.9790 0.3194 -1.1808 17 1 3.5309 -0.6711 -1.1023 18 6 5.5181 0.2005 -1.1941 19 6 5.8418 0.2813 -2.7110 20 6 4.7415 1.2592 -3.1948 21 8 3.5818 0.9363 -2.4110 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8464 -0.8898 27 1 4.8370 0.0518 1.1236 28 1 3.1591 2.0537 2.4894 29 1 4.8567 2.3107 2.0199 30 1 4.7066 3.4606 5.5177 31 1 5.9760 1.0298 -0.6551 32 1 5.8370 -0.7560 -0.7800 33 1 5.7381 -0.6936 -3.1873 34 1 6.8363 0.6948 -2.8789 35 1 4.5371 1.1045 -4.2543 36 1 5.0444 2.2907 -3.0152 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591764231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:29 Heat of formation + Delta-G solvation = -119.878064 kcal Electronic energy + Delta-G solvation = -16703.948353 eV Core-core repulsion = 13994.036270 eV Total energy + Delta-G solvation = -2709.912083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77882 -38.68931 -36.93635 -34.71947 -32.97783 -31.62560 -29.05914 -28.09764 -26.72952 -24.62440 -23.17981 -22.50008 -21.22811 -18.67530 -17.96859 -17.44083 -17.02535 -16.66668 -16.43590 -16.14748 -15.54130 -15.25138 -14.67282 -14.42288 -14.11754 -13.84476 -13.53386 -13.13011 -13.08606 -12.73888 -12.62917 -12.48010 -12.22797 -12.17506 -11.96329 -11.76291 -11.49156 -11.28926 -10.67726 -10.54870 -10.34783 -9.13075 -8.23063 -6.34126 1.40932 1.42982 1.54958 2.39333 2.77459 3.03737 3.10389 3.47117 3.61115 3.76940 3.97793 4.15134 4.24991 4.33580 4.42953 4.52090 4.60261 4.63030 4.67486 4.81611 4.82661 4.85690 4.92672 4.99079 5.02543 5.11912 5.23478 5.28829 5.61487 6.00034 6.09975 6.31978 6.46883 6.71023 6.88335 7.36806 8.88706 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.007051 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.316051 B = 3970.381076 C = 4674.137911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.392 6.392 3 C 0.088 3.912 4 C 0.077 3.923 5 H 0.037 0.963 6 N -0.670 5.670 7 C 0.213 3.787 8 C -0.534 4.534 9 H 0.065 0.935 10 C 0.002 3.998 11 N -0.935 5.935 12 Si 0.974 3.026 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.265 1.265 16 C 0.097 3.903 17 H 0.086 0.914 18 C -0.158 4.158 19 C -0.142 4.142 20 C 0.039 3.961 21 O -0.395 6.395 22 H 0.032 0.968 23 H 0.050 0.950 24 H 0.099 0.901 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.338 0.662 28 H -0.003 1.003 29 H -0.039 1.039 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -4.934 -14.562 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.310 6.310 3 C 0.011 3.989 4 C -0.033 4.033 5 H 0.055 0.945 6 N -0.303 5.303 7 C 0.086 3.914 8 C -0.572 4.572 9 H 0.083 0.917 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.798 3.202 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.190 1.190 16 C 0.039 3.961 17 H 0.104 0.896 18 C -0.196 4.196 19 C -0.179 4.179 20 C -0.037 4.037 21 O -0.314 6.314 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.118 0.882 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.015 0.985 29 H -0.021 1.021 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.083 -5.086 -14.344 15.257 hybrid contribution 0.840 0.919 0.924 1.550 sum -0.243 -4.167 -13.420 14.054 Atomic orbital electron populations 1.22862 0.80560 1.03558 0.99941 1.87872 1.20432 1.27481 1.95263 1.22316 0.93324 0.84813 0.98491 1.21892 0.94357 0.96436 0.90629 0.94544 1.60488 1.37282 1.27893 1.04678 1.19222 0.93339 0.89338 0.89539 1.21521 1.45116 0.94936 0.95646 0.91706 1.25952 0.95422 0.95435 1.02846 1.70092 1.50308 1.07000 1.30075 0.85318 0.78626 0.78543 0.77722 1.19454 1.20757 1.18962 1.22587 0.94781 0.95784 0.82947 0.89597 1.23233 0.94062 1.03643 0.98631 1.23231 1.00225 1.01049 0.93437 1.23627 0.85121 0.98346 0.96605 1.88391 1.31868 1.80769 1.30332 0.94889 0.93145 0.88213 0.95856 0.92248 0.84369 0.98518 1.02111 0.92610 0.91828 0.88640 0.89014 0.88145 0.87680 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -14.66 9.77 -148.98 -1.46 -16.12 16 3 C 0.09 3.38 5.50 71.98 0.40 3.77 16 4 C 0.08 3.02 2.08 44.92 0.09 3.11 16 5 H 0.04 1.51 7.80 -2.39 -0.02 1.49 16 6 N -0.67 -30.26 6.25 -495.56 -3.10 -33.36 16 7 C 0.21 11.75 5.24 85.56 0.45 12.20 16 8 C -0.53 -31.03 9.32 25.60 0.24 -30.79 16 9 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 10 C 0.00 0.09 5.46 84.65 0.46 0.55 16 11 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 12 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 C 0.10 3.09 3.02 31.07 0.09 3.18 16 17 H 0.09 2.91 7.56 -2.39 -0.02 2.89 16 18 C -0.16 -4.14 5.23 31.86 0.17 -3.97 16 19 C -0.14 -2.74 7.16 32.06 0.23 -2.51 16 20 C 0.04 0.85 7.78 72.65 0.57 1.42 16 21 O -0.39 -11.97 10.52 -148.98 -1.57 -13.53 16 22 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.02 0.99 7.35 -2.38 -0.02 0.97 16 26 H 0.06 2.06 7.89 -2.39 -0.02 2.04 16 27 H 0.34 14.14 7.14 -89.69 -0.64 13.50 16 28 H 0.00 -0.20 7.36 -2.39 -0.02 -0.22 16 29 H -0.04 -2.27 8.06 -2.38 -0.02 -2.29 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.06 1.85 7.85 -2.39 -0.02 1.83 16 32 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.70 294.71 0.54 -67.16 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.40 Total: 16.93 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 3.94 Total: -11.01 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -2.81 Total: -90.17 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -3.02 Total: -29.65 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.70 0.54 -67.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.717 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds