Wall clock time and date at job start Sun Mar 29 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00524 * 2 1 4 4 H 1.09004 * 109.51705 * 30.12198 * 3 2 1 5 5 C 1.53092 * 109.51930 * 270.00047 * 3 2 1 6 6 O 1.42905 * 109.41215 * 182.41807 * 5 3 2 7 7 C 1.42905 * 114.09831 * 61.16158 * 6 5 3 8 8 C 1.53098 * 109.41155 * 298.83847 * 7 6 5 9 9 C 1.53175 * 109.57663 * 150.28350 * 3 2 1 10 10 H 1.08996 * 109.54473 * 56.95844 * 9 3 2 11 11 C 1.52997 * 109.54337 * 296.78218 * 9 3 2 12 12 N 1.46898 * 109.47522 * 174.99926 * 11 9 3 13 13 C 1.46894 * 111.00443 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47284 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00020 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99815 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99767 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47432 * 60.00125 * 18 16 14 20 20 H 1.48500 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47317 * 299.99862 * 18 16 14 22 22 H 1.09004 * 109.47284 * 59.99446 * 1 2 3 23 23 H 1.08999 * 109.47583 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47010 * 300.00651 * 1 2 3 25 25 H 1.08997 * 109.48111 * 62.43949 * 5 3 2 26 26 H 1.09000 * 109.48212 * 302.40223 * 5 3 2 27 27 H 1.09000 * 109.47932 * 58.81878 * 7 6 5 28 28 H 1.08993 * 109.48024 * 178.86013 * 7 6 5 29 29 H 1.08996 * 109.52270 * 297.70307 * 8 7 6 30 30 H 1.08995 * 109.57012 * 177.54155 * 8 7 6 31 31 H 1.09001 * 109.47366 * 295.00323 * 11 9 3 32 32 H 1.09010 * 109.47070 * 55.00146 * 11 9 3 33 33 H 1.00906 * 110.99452 * 56.04946 * 12 11 9 34 34 H 1.09000 * 109.47466 * 300.00122 * 13 12 11 35 35 H 1.08999 * 109.47112 * 59.99903 * 13 12 11 36 36 H 0.96996 * 119.99789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3467 1.9996 0.5156 5 6 2.2184 1.7727 -1.4429 6 8 2.8512 3.0540 -1.4407 7 6 4.1416 3.0663 -0.8267 8 6 4.0108 2.6510 0.6410 9 6 3.3641 1.2644 0.7154 10 1 4.0105 0.5326 0.2309 11 6 3.1573 0.8741 2.1802 12 7 4.4631 0.7184 2.8347 13 6 4.3035 0.3424 4.2457 14 6 5.6611 0.1927 4.8824 15 1 6.5534 0.3597 4.2973 16 6 5.7642 -0.1586 6.2118 17 7 4.6777 -0.3625 6.9241 18 14 7.4470 -0.3448 7.0008 19 1 8.1806 0.9433 6.9122 20 1 7.2857 -0.7248 8.4273 21 1 8.2128 -1.4004 6.2904 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8900 25 1 1.2533 1.8449 -1.9444 26 1 2.8492 1.0566 -1.9696 27 1 4.7976 2.3671 -1.3453 28 1 4.5619 4.0703 -0.8842 29 1 3.3876 3.3724 1.1695 30 1 4.9986 2.6173 1.1004 31 1 2.5875 1.6531 2.6869 32 1 2.6105 -0.0676 2.2317 33 1 5.0153 1.5581 2.7442 34 1 3.7416 1.1174 4.7669 35 1 3.7649 -0.6030 4.3110 36 1 4.7502 -0.6092 7.8594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:39 Heat of formation + Delta-G solvation = -103.114123 kcal Electronic energy + Delta-G solvation = -16438.201683 eV Core-core repulsion = 13729.016539 eV Total energy + Delta-G solvation = -2709.185144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86087 -37.28537 -35.84857 -33.28224 -31.73952 -30.43988 -27.65187 -26.65077 -25.30972 -23.16889 -22.26576 -21.14813 -20.03320 -16.94929 -16.54632 -16.36565 -15.73319 -15.38213 -15.08672 -14.66537 -14.48041 -13.72043 -13.45666 -13.13519 -12.99832 -12.71311 -12.06559 -12.03047 -11.49544 -11.39950 -11.20616 -10.93650 -10.74161 -10.55300 -10.51450 -10.28756 -10.06242 -9.90041 -9.28934 -9.03298 -8.46187 -7.26661 -6.01530 -4.03642 3.34550 3.38265 3.41479 3.50253 3.99917 4.43428 4.65330 4.77455 4.87640 5.03484 5.11635 5.22706 5.31400 5.32154 5.34202 5.50396 5.59152 5.60221 5.65464 5.66995 5.85793 6.01769 6.13073 6.18525 6.48356 6.54184 6.94381 7.26248 7.29498 7.44486 7.79824 8.15089 8.42194 8.63922 9.05408 9.61105 11.09660 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037032 B = 0.005414 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.912292 B = 5170.152065 C = 5762.699017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.062 3.938 4 H 0.067 0.933 5 C 0.043 3.957 6 O -0.382 6.382 7 C 0.059 3.941 8 C -0.151 4.151 9 C -0.084 4.084 10 H 0.087 0.913 11 C 0.069 3.931 12 N -0.689 5.689 13 C 0.194 3.806 14 C -0.515 4.515 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.038 0.962 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.014 0.986 32 H 0.072 0.928 33 H 0.325 0.675 34 H -0.015 1.015 35 H 0.028 0.972 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 5.291 -15.291 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.003 3.997 4 H 0.085 0.915 5 C -0.034 4.034 6 O -0.300 6.300 7 C -0.018 4.018 8 C -0.189 4.189 9 C -0.103 4.103 10 H 0.106 0.894 11 C -0.061 4.061 12 N -0.320 5.320 13 C 0.068 3.932 14 C -0.553 4.553 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.056 0.944 23 H 0.104 0.896 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.003 0.997 35 H 0.046 0.954 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.172 4.576 -15.379 17.191 hybrid contribution 0.359 0.638 1.124 1.341 sum -5.812 5.214 -14.255 16.253 Atomic orbital electron populations 1.22813 0.81326 1.02781 0.99819 1.87964 1.19396 1.26967 1.94888 1.22812 0.95902 0.85046 0.95915 0.91515 1.23014 0.98287 0.85661 0.96465 1.87912 1.32477 1.30061 1.79581 1.22665 0.84498 1.02149 0.92483 1.22296 1.02735 0.96640 0.97195 1.21327 0.94448 0.97208 0.97331 0.89425 1.21833 0.92926 0.99866 0.91492 1.60686 1.13523 1.38808 1.18975 1.19537 0.97076 0.95387 0.81236 1.21159 0.92584 1.46797 0.94797 0.92034 1.24998 0.96901 0.95462 0.97233 1.69956 1.27728 1.47753 1.08362 0.86530 0.84059 0.78574 0.78042 1.20284 1.21341 1.20137 0.94357 0.89551 0.93865 0.89211 0.92263 0.92814 0.88711 0.91192 0.89408 0.96808 0.90954 0.85766 0.99737 0.95416 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.37 -5.24 9.75 -35.23 -0.34 -5.58 16 3 C 0.06 0.82 2.21 -26.59 -0.06 0.77 16 4 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 5 C 0.04 0.51 6.46 37.20 0.24 0.75 16 6 O -0.38 -4.85 10.77 -35.23 -0.38 -5.23 16 7 C 0.06 0.66 6.84 37.21 0.25 0.92 16 8 C -0.15 -1.96 5.12 -26.59 -0.14 -2.10 16 9 C -0.08 -1.26 2.21 -90.44 -0.20 -1.46 16 10 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 11 C 0.07 1.28 5.09 -3.83 -0.02 1.27 16 12 N -0.69 -15.18 6.49 -115.06 -0.75 -15.92 16 13 C 0.19 5.25 5.44 -4.98 -0.03 5.22 16 14 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.04 0.33 7.93 -51.93 -0.41 -0.08 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.44 8.09 -51.92 -0.42 0.02 16 25 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.15 6.85 -51.93 -0.36 0.79 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 1.45 7.65 -51.92 -0.40 1.05 16 33 H 0.33 6.70 7.08 -39.29 -0.28 6.42 16 34 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -31.41 292.83 -6.64 -38.05 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.03 Total: 0.83 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 0.73 Total: -6.91 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.01 Total: -42.46 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.72 Total: -10.81 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.41 -6.64 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.060 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds