Wall clock time and date at job start Sun Mar 29 2020 21:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00524 * 2 1 4 4 H 1.09004 * 109.51705 * 30.12198 * 3 2 1 5 5 C 1.53092 * 109.51930 * 270.00047 * 3 2 1 6 6 O 1.42905 * 109.41215 * 182.41807 * 5 3 2 7 7 C 1.42905 * 114.09831 * 61.16158 * 6 5 3 8 8 C 1.53098 * 109.41155 * 298.83847 * 7 6 5 9 9 C 1.53175 * 109.57663 * 150.28350 * 3 2 1 10 10 H 1.08996 * 109.54473 * 56.95844 * 9 3 2 11 11 C 1.52997 * 109.54337 * 296.78218 * 9 3 2 12 12 N 1.46898 * 109.47522 * 174.99926 * 11 9 3 13 13 C 1.46894 * 111.00443 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47284 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00020 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99815 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99767 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47432 * 60.00125 * 18 16 14 20 20 H 1.48500 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47317 * 299.99862 * 18 16 14 22 22 H 1.09004 * 109.47284 * 59.99446 * 1 2 3 23 23 H 1.08999 * 109.47583 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47010 * 300.00651 * 1 2 3 25 25 H 1.08997 * 109.48111 * 62.43949 * 5 3 2 26 26 H 1.09000 * 109.48212 * 302.40223 * 5 3 2 27 27 H 1.09000 * 109.47932 * 58.81878 * 7 6 5 28 28 H 1.08993 * 109.48024 * 178.86013 * 7 6 5 29 29 H 1.08996 * 109.52270 * 297.70307 * 8 7 6 30 30 H 1.08995 * 109.57012 * 177.54155 * 8 7 6 31 31 H 1.09001 * 109.47366 * 295.00323 * 11 9 3 32 32 H 1.09010 * 109.47070 * 55.00146 * 11 9 3 33 33 H 1.00906 * 110.99452 * 56.04946 * 12 11 9 34 34 H 1.09000 * 109.47466 * 300.00122 * 13 12 11 35 35 H 1.08999 * 109.47112 * 59.99903 * 13 12 11 36 36 H 0.96996 * 119.99789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3467 1.9996 0.5156 5 6 2.2184 1.7727 -1.4429 6 8 2.8512 3.0540 -1.4407 7 6 4.1416 3.0663 -0.8267 8 6 4.0108 2.6510 0.6410 9 6 3.3641 1.2644 0.7154 10 1 4.0105 0.5326 0.2309 11 6 3.1573 0.8741 2.1802 12 7 4.4631 0.7184 2.8347 13 6 4.3035 0.3424 4.2457 14 6 5.6611 0.1927 4.8824 15 1 6.5534 0.3597 4.2973 16 6 5.7642 -0.1586 6.2118 17 7 4.6777 -0.3625 6.9241 18 14 7.4470 -0.3448 7.0008 19 1 8.1806 0.9433 6.9122 20 1 7.2857 -0.7248 8.4273 21 1 8.2128 -1.4004 6.2904 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8900 25 1 1.2533 1.8449 -1.9444 26 1 2.8492 1.0566 -1.9696 27 1 4.7976 2.3671 -1.3453 28 1 4.5619 4.0703 -0.8842 29 1 3.3876 3.3724 1.1695 30 1 4.9986 2.6173 1.1004 31 1 2.5875 1.6531 2.6869 32 1 2.6105 -0.0676 2.2317 33 1 5.0153 1.5581 2.7442 34 1 3.7416 1.1174 4.7669 35 1 3.7649 -0.6030 4.3110 36 1 4.7502 -0.6092 7.8594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:38 Heat of formation + Delta-G solvation = -126.566025 kcal Electronic energy + Delta-G solvation = -16439.218634 eV Core-core repulsion = 13729.016539 eV Total energy + Delta-G solvation = -2710.202094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90792 -38.26347 -37.47833 -35.12150 -33.49280 -31.40018 -29.41878 -27.52407 -26.98301 -24.27918 -23.86314 -22.86615 -21.19232 -18.63486 -17.92769 -17.39029 -17.05968 -16.64557 -16.50545 -16.10452 -15.77315 -15.03956 -14.83769 -14.64340 -14.27873 -14.02957 -13.74570 -13.38335 -13.17525 -12.68282 -12.64207 -12.50997 -12.26880 -12.07518 -11.96600 -11.66595 -11.44415 -11.25669 -11.02172 -10.67106 -10.17115 -9.16931 -8.23774 -6.35964 1.41157 1.45378 1.53402 2.39601 2.56744 3.06036 3.09407 3.40675 3.73374 3.78586 3.86886 4.05516 4.17073 4.32997 4.38125 4.46091 4.50842 4.59803 4.71922 4.72355 4.80772 4.84074 4.92246 5.02135 5.06531 5.10001 5.23379 5.27315 5.59490 5.98948 6.01308 6.32123 6.40962 6.69779 6.87138 7.35282 8.88011 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037032 B = 0.005414 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.912292 B = 5170.152065 C = 5762.699017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.065 3.935 4 H 0.067 0.933 5 C 0.048 3.952 6 O -0.390 6.390 7 C 0.061 3.939 8 C -0.148 4.148 9 C -0.078 4.078 10 H 0.078 0.922 11 C 0.073 3.927 12 N -0.686 5.686 13 C 0.208 3.792 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.268 1.268 22 H 0.061 0.939 23 H 0.096 0.904 24 H 0.040 0.960 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.012 0.988 32 H 0.052 0.948 33 H 0.336 0.664 34 H -0.041 1.041 35 H -0.005 1.005 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 5.998 -16.399 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.006 3.994 4 H 0.085 0.915 5 C -0.029 4.029 6 O -0.309 6.309 7 C -0.015 4.015 8 C -0.185 4.185 9 C -0.097 4.097 10 H 0.096 0.904 11 C -0.056 4.056 12 N -0.317 5.317 13 C 0.081 3.919 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.193 1.193 22 H 0.080 0.920 23 H 0.115 0.885 24 H 0.059 0.941 25 H 0.128 0.872 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.154 0.846 34 H -0.023 1.023 35 H 0.013 0.987 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.258 5.296 -16.516 18.124 hybrid contribution -0.011 0.395 1.457 1.510 sum -5.270 5.691 -15.059 16.939 Atomic orbital electron populations 1.23011 0.79581 1.03903 1.00840 1.87926 1.21409 1.27398 1.95098 1.22776 0.94650 0.85006 0.96955 0.91506 1.23032 0.99382 0.85393 0.95141 1.87911 1.33004 1.30467 1.79519 1.22750 0.84305 1.03655 0.90837 1.22273 1.02251 0.95149 0.98872 1.21250 0.95943 0.98187 0.94301 0.90367 1.21822 0.91020 0.98898 0.93890 1.60550 1.15552 1.39651 1.15992 1.19191 0.95947 0.93035 0.83771 1.21521 0.93214 1.47330 0.95569 0.91492 1.26014 1.01427 0.94604 0.97774 1.70095 1.30393 1.48247 1.08839 0.85320 0.78513 0.79141 0.76921 1.18843 1.20759 1.19290 0.92042 0.88508 0.94088 0.87190 0.91991 0.91977 0.86532 0.91370 0.89618 0.97030 0.92899 0.84562 1.02294 0.98669 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.82 113.37 1.23 1.67 16 2 O -0.40 -10.94 9.75 -148.98 -1.45 -12.39 16 3 C 0.06 1.66 2.21 30.68 0.07 1.73 16 4 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16 5 C 0.05 1.01 6.46 72.01 0.47 1.48 16 6 O -0.39 -8.94 10.77 -148.98 -1.60 -10.54 16 7 C 0.06 1.23 6.84 72.01 0.49 1.72 16 8 C -0.15 -3.65 5.12 30.69 0.16 -3.49 16 9 C -0.08 -2.30 2.21 -10.68 -0.02 -2.32 16 10 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 11 C 0.07 2.80 5.09 86.30 0.44 3.24 16 12 N -0.69 -30.82 6.49 -517.94 -3.36 -34.18 16 13 C 0.21 11.67 5.44 85.56 0.47 12.13 16 14 C -0.54 -31.42 9.32 25.60 0.24 -31.18 16 15 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 16 C 0.00 0.00 5.46 84.66 0.46 0.46 16 17 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 18 Si 0.98 44.65 29.54 68.60 2.03 46.67 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 23 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 0.81 8.09 -2.38 -0.02 0.79 16 25 H 0.11 1.90 7.93 -2.39 -0.02 1.88 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.14 6.85 -2.39 -0.02 2.13 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 2.21 7.65 -2.38 -0.02 2.19 16 33 H 0.34 13.88 7.08 -89.69 -0.63 13.25 16 34 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 35 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -67.54 292.83 0.29 -67.24 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.41 Total: 15.13 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.99 Total: -14.56 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -3.08 Total: -91.56 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -3.06 Total: -22.94 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.54 0.29 -67.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.324 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds