Wall clock time and date at job start Sun Mar 29 2020 21:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00172 * 2 1 4 4 H 1.09002 * 109.52053 * 330.00041 * 3 2 1 5 5 C 1.53091 * 109.52101 * 90.12595 * 3 2 1 6 6 O 1.42908 * 109.41644 * 177.57786 * 5 3 2 7 7 C 1.42898 * 114.09533 * 298.84385 * 6 5 3 8 8 C 1.53089 * 109.41693 * 61.15804 * 7 6 5 9 9 C 1.53176 * 109.52528 * 209.87213 * 3 2 1 10 10 H 1.08995 * 109.54674 * 302.92358 * 9 3 2 11 11 C 1.53002 * 109.53933 * 63.18574 * 9 3 2 12 12 N 1.46899 * 109.47111 * 185.00205 * 11 9 3 13 13 C 1.46902 * 111.00602 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47502 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99708 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00302 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99768 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46826 * 90.00298 * 18 16 14 20 20 H 1.48499 * 109.47351 * 210.00025 * 18 16 14 21 21 H 1.48500 * 109.47106 * 330.00333 * 18 16 14 22 22 H 1.08996 * 109.47394 * 299.99857 * 1 2 3 23 23 H 1.09001 * 109.47263 * 60.00009 * 1 2 3 24 24 H 1.08998 * 109.47402 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.48127 * 297.56087 * 5 3 2 26 26 H 1.09001 * 109.48094 * 57.58569 * 5 3 2 27 27 H 1.09001 * 109.47804 * 181.13998 * 7 6 5 28 28 H 1.08997 * 109.48388 * 301.16911 * 7 6 5 29 29 H 1.09001 * 109.52837 * 62.29275 * 8 7 6 30 30 H 1.09010 * 109.52262 * 182.48521 * 8 7 6 31 31 H 1.09003 * 109.47242 * 304.99888 * 11 9 3 32 32 H 1.08999 * 109.47469 * 65.00074 * 11 9 3 33 33 H 1.00906 * 111.00385 * 56.03882 * 12 11 9 34 34 H 1.08998 * 109.46571 * 300.00056 * 13 12 11 35 35 H 1.08998 * 109.46865 * 59.99228 * 13 12 11 36 36 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3456 2.0001 -0.5137 5 6 2.2212 1.7715 1.4429 6 8 2.8541 3.0528 1.4406 7 6 4.1431 3.0656 0.8240 8 6 4.0093 2.6516 -0.6438 9 6 3.3621 1.2639 -0.7190 10 1 4.0100 0.5329 -0.2355 11 6 3.1510 0.8740 -2.1834 12 7 4.4551 0.7178 -2.8414 13 6 4.2915 0.3421 -4.2521 14 6 5.6473 0.1919 -4.8925 15 1 6.5412 0.3584 -4.3098 16 6 5.7466 -0.1591 -6.2221 17 7 4.6581 -0.3624 -6.9316 18 14 7.4272 -0.3446 -7.0162 19 1 7.8926 -1.7471 -6.8679 20 1 7.3336 -0.0042 -8.4586 21 1 8.3915 0.5697 -6.3533 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.2570 1.8432 1.9464 26 1 2.8530 1.0548 1.9677 27 1 4.5636 4.0696 0.8816 28 1 4.8002 2.3661 1.3406 29 1 3.3851 3.3734 -1.1705 30 1 4.9968 2.6181 -1.1043 31 1 2.6037 -0.0673 -2.2336 32 1 2.5804 1.6534 -2.6884 33 1 5.0285 0.0465 -2.3529 34 1 3.7523 -0.6030 -4.3161 35 1 3.7285 1.1175 -4.7716 36 1 4.7279 -0.6090 -7.8671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:40 Heat of formation + Delta-G solvation = -103.835810 kcal Electronic energy + Delta-G solvation = -16431.749731 eV Core-core repulsion = 13722.533293 eV Total energy + Delta-G solvation = -2709.216438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81285 -37.27690 -35.76383 -33.28073 -31.76579 -30.37982 -27.64069 -26.65683 -25.27002 -23.04135 -22.24141 -21.13565 -20.09766 -16.92366 -16.53977 -16.29631 -15.72455 -15.26363 -15.04987 -14.68965 -14.35186 -14.00133 -13.35685 -13.19671 -12.82803 -12.53801 -12.03395 -11.99797 -11.54832 -11.35638 -11.21763 -10.83302 -10.74835 -10.58153 -10.52434 -10.27470 -10.04249 -9.89548 -9.27762 -9.01103 -8.46646 -7.25219 -6.01735 -4.03710 3.32665 3.38524 3.43083 3.52338 4.02686 4.43381 4.66203 4.79146 4.92108 5.13072 5.14761 5.22782 5.31373 5.34184 5.39228 5.54598 5.57539 5.61527 5.65362 5.82245 5.90188 6.06836 6.14920 6.41865 6.47005 6.54317 6.96996 7.27434 7.28826 7.45457 7.79952 8.14791 8.41706 8.63674 9.05754 9.61166 11.09487 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037011 B = 0.005412 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.356454 B = 5172.509804 C = 5761.119026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.069 0.931 5 C 0.044 3.956 6 O -0.382 6.382 7 C 0.055 3.945 8 C -0.138 4.138 9 C -0.082 4.082 10 H 0.075 0.925 11 C 0.068 3.932 12 N -0.689 5.689 13 C 0.194 3.806 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.038 0.962 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.327 0.673 34 H -0.014 1.014 35 H 0.026 0.974 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 3.791 15.624 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.087 0.913 5 C -0.033 4.033 6 O -0.301 6.301 7 C -0.022 4.022 8 C -0.176 4.176 9 C -0.101 4.101 10 H 0.093 0.907 11 C -0.063 4.063 12 N -0.319 5.319 13 C 0.067 3.933 14 C -0.552 4.552 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.003 0.997 35 H 0.044 0.956 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.057 4.423 15.362 17.095 hybrid contribution 0.359 -1.147 -0.659 1.370 sum -5.698 3.276 14.703 16.105 Atomic orbital electron populations 1.22802 0.81295 1.02718 0.99885 1.87941 1.19471 1.27213 1.94921 1.22855 0.96017 0.84961 0.96010 0.91324 1.22986 0.98225 0.85750 0.96361 1.87910 1.32722 1.29925 1.79548 1.22752 0.84282 1.02105 0.93021 1.22186 1.03555 0.95813 0.96041 1.21328 0.94097 0.97875 0.96776 0.90652 1.21819 0.93212 0.99427 0.91794 1.60682 1.12373 1.53518 1.05295 1.19533 0.97116 0.94131 0.82474 1.21191 0.92619 1.46130 0.95247 0.91973 1.24997 0.96860 0.95485 0.97285 1.69964 1.27590 1.47872 1.08394 0.86482 0.84093 0.78320 0.78404 1.20736 1.21257 1.19769 0.94307 0.93823 0.89647 0.89288 0.92464 0.88742 0.93132 0.91206 0.88561 0.95459 0.92177 0.85675 0.99665 0.95555 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.38 -5.23 9.74 -35.23 -0.34 -5.57 16 3 C 0.06 0.80 2.21 -26.59 -0.06 0.74 16 4 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 5 C 0.04 0.52 6.46 37.20 0.24 0.76 16 6 O -0.38 -4.97 10.77 -35.23 -0.38 -5.35 16 7 C 0.05 0.64 6.84 37.20 0.25 0.90 16 8 C -0.14 -1.90 5.28 -26.52 -0.14 -2.04 16 9 C -0.08 -1.22 2.14 -90.37 -0.19 -1.41 16 10 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 11 C 0.07 1.25 5.03 -3.82 -0.02 1.23 16 12 N -0.69 -14.92 6.04 -115.06 -0.70 -15.62 16 13 C 0.19 5.20 5.44 -4.98 -0.03 5.18 16 14 C -0.51 -14.73 9.32 -34.44 -0.32 -15.06 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.04 0.33 7.94 -51.93 -0.41 -0.08 16 23 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.91 7.94 -51.92 -0.41 0.49 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.42 7.88 -51.92 -0.41 1.01 16 31 H 0.03 0.54 7.65 -51.93 -0.40 0.14 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.33 6.83 8.72 -39.29 -0.34 6.49 16 34 H -0.01 -0.41 8.14 -51.93 -0.42 -0.84 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -31.02 295.10 -6.67 -37.69 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.15 Total: 0.86 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 0.73 Total: -6.80 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.04 Total: -42.12 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.72 Total: -10.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.02 -6.67 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.144 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds