Wall clock time and date at job start Sun Mar 29 2020 21:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00172 * 2 1 4 4 H 1.09002 * 109.52053 * 330.00041 * 3 2 1 5 5 C 1.53091 * 109.52101 * 90.12595 * 3 2 1 6 6 O 1.42908 * 109.41644 * 177.57786 * 5 3 2 7 7 C 1.42898 * 114.09533 * 298.84385 * 6 5 3 8 8 C 1.53089 * 109.41693 * 61.15804 * 7 6 5 9 9 C 1.53176 * 109.52528 * 209.87213 * 3 2 1 10 10 H 1.08995 * 109.54674 * 302.92358 * 9 3 2 11 11 C 1.53002 * 109.53933 * 63.18574 * 9 3 2 12 12 N 1.46899 * 109.47111 * 185.00205 * 11 9 3 13 13 C 1.46902 * 111.00602 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47502 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99708 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00302 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99768 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46826 * 90.00298 * 18 16 14 20 20 H 1.48499 * 109.47351 * 210.00025 * 18 16 14 21 21 H 1.48500 * 109.47106 * 330.00333 * 18 16 14 22 22 H 1.08996 * 109.47394 * 299.99857 * 1 2 3 23 23 H 1.09001 * 109.47263 * 60.00009 * 1 2 3 24 24 H 1.08998 * 109.47402 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.48127 * 297.56087 * 5 3 2 26 26 H 1.09001 * 109.48094 * 57.58569 * 5 3 2 27 27 H 1.09001 * 109.47804 * 181.13998 * 7 6 5 28 28 H 1.08997 * 109.48388 * 301.16911 * 7 6 5 29 29 H 1.09001 * 109.52837 * 62.29275 * 8 7 6 30 30 H 1.09010 * 109.52262 * 182.48521 * 8 7 6 31 31 H 1.09003 * 109.47242 * 304.99888 * 11 9 3 32 32 H 1.08999 * 109.47469 * 65.00074 * 11 9 3 33 33 H 1.00906 * 111.00385 * 56.03882 * 12 11 9 34 34 H 1.08998 * 109.46571 * 300.00056 * 13 12 11 35 35 H 1.08998 * 109.46865 * 59.99228 * 13 12 11 36 36 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3456 2.0001 -0.5137 5 6 2.2212 1.7715 1.4429 6 8 2.8541 3.0528 1.4406 7 6 4.1431 3.0656 0.8240 8 6 4.0093 2.6516 -0.6438 9 6 3.3621 1.2639 -0.7190 10 1 4.0100 0.5329 -0.2355 11 6 3.1510 0.8740 -2.1834 12 7 4.4551 0.7178 -2.8414 13 6 4.2915 0.3421 -4.2521 14 6 5.6473 0.1919 -4.8925 15 1 6.5412 0.3584 -4.3098 16 6 5.7466 -0.1591 -6.2221 17 7 4.6581 -0.3624 -6.9316 18 14 7.4272 -0.3446 -7.0162 19 1 7.8926 -1.7471 -6.8679 20 1 7.3336 -0.0042 -8.4586 21 1 8.3915 0.5697 -6.3533 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.2570 1.8432 1.9464 26 1 2.8530 1.0548 1.9677 27 1 4.5636 4.0696 0.8816 28 1 4.8002 2.3661 1.3406 29 1 3.3851 3.3734 -1.1705 30 1 4.9968 2.6181 -1.1043 31 1 2.6037 -0.0673 -2.2336 32 1 2.5804 1.6534 -2.6884 33 1 5.0285 0.0465 -2.3529 34 1 3.7523 -0.6030 -4.3161 35 1 3.7285 1.1175 -4.7716 36 1 4.7279 -0.6090 -7.8671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:40 Heat of formation + Delta-G solvation = -126.753363 kcal Electronic energy + Delta-G solvation = -16432.743511 eV Core-core repulsion = 13722.533293 eV Total energy + Delta-G solvation = -2710.210218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87062 -38.26219 -37.40855 -35.10460 -33.52358 -31.36112 -29.41888 -27.52702 -26.93698 -24.15113 -23.86405 -22.86940 -21.25701 -18.60322 -17.91135 -17.41391 -16.93068 -16.57407 -16.38171 -16.19509 -15.82357 -15.19678 -14.82232 -14.61153 -14.17224 -13.94692 -13.65989 -13.36526 -13.12303 -12.77237 -12.61323 -12.51820 -12.26782 -12.09898 -11.85650 -11.69515 -11.45466 -11.24563 -11.00757 -10.67328 -10.15782 -9.14568 -8.23549 -6.35375 1.41295 1.43354 1.55242 2.39694 2.57438 3.07810 3.09842 3.40213 3.72110 3.76731 3.99330 4.09845 4.20779 4.34502 4.42066 4.46699 4.50420 4.61932 4.72420 4.77435 4.81204 4.85195 4.87114 5.03304 5.10724 5.21097 5.25799 5.34383 5.60080 5.99647 6.01671 6.32252 6.40991 6.68814 6.86911 7.35892 8.88440 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037011 B = 0.005412 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.356454 B = 5172.509804 C = 5761.119026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.064 3.936 4 H 0.067 0.933 5 C 0.048 3.952 6 O -0.391 6.391 7 C 0.059 3.941 8 C -0.134 4.134 9 C -0.076 4.076 10 H 0.075 0.925 11 C 0.073 3.927 12 N -0.680 5.680 13 C 0.208 3.792 14 C -0.535 4.535 15 H 0.067 0.933 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.977 3.023 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.262 1.262 22 H 0.061 0.939 23 H 0.040 0.960 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.014 0.986 32 H 0.051 0.949 33 H 0.334 0.666 34 H -0.044 1.044 35 H -0.002 1.002 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 4.119 16.884 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.005 3.995 4 H 0.085 0.915 5 C -0.029 4.029 6 O -0.310 6.310 7 C -0.017 4.017 8 C -0.172 4.172 9 C -0.095 4.095 10 H 0.094 0.906 11 C -0.057 4.057 12 N -0.310 5.310 13 C 0.081 3.919 14 C -0.573 4.573 15 H 0.085 0.915 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.801 3.199 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.151 0.849 34 H -0.026 1.026 35 H 0.016 0.984 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.190 4.755 16.653 18.080 hybrid contribution 0.000 -1.264 -1.043 1.639 sum -5.190 3.490 15.610 16.817 Atomic orbital electron populations 1.23003 0.79588 1.03869 1.00856 1.87903 1.21420 1.27466 1.95117 1.22797 0.94756 0.84967 0.96979 0.91520 1.23023 0.99349 0.85426 0.95107 1.87909 1.33168 1.30514 1.79421 1.22796 0.84230 1.03522 0.91201 1.22129 1.02500 0.94789 0.97780 1.21262 0.95697 0.98578 0.93944 0.90614 1.21823 0.91287 0.98493 0.94101 1.60564 1.14220 1.53084 1.03157 1.19192 0.95944 0.91634 0.85174 1.21544 0.93251 1.46559 0.95993 0.91460 1.26006 1.01327 0.94682 0.97856 1.70101 1.30242 1.48419 1.08896 0.85277 0.78652 0.78778 0.77239 1.19668 1.20723 1.18657 0.92036 0.94123 0.88519 0.87259 0.91940 0.86867 0.91984 0.91948 0.89698 0.96807 0.93065 0.84914 1.02627 0.98415 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.67 16 2 O -0.40 -10.71 9.74 -148.98 -1.45 -12.16 16 3 C 0.06 1.62 2.21 30.68 0.07 1.69 16 4 H 0.07 1.70 7.79 -2.39 -0.02 1.69 16 5 C 0.05 1.02 6.46 72.01 0.47 1.49 16 6 O -0.39 -9.19 10.77 -148.98 -1.60 -10.80 16 7 C 0.06 1.25 6.84 72.01 0.49 1.74 16 8 C -0.13 -3.56 5.28 30.73 0.16 -3.40 16 9 C -0.08 -2.22 2.14 -10.63 -0.02 -2.24 16 10 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 11 C 0.07 2.74 5.03 86.30 0.43 3.18 16 12 N -0.68 -30.08 6.04 -517.94 -3.13 -33.21 16 13 C 0.21 11.58 5.44 85.55 0.47 12.04 16 14 C -0.54 -31.08 9.32 25.60 0.24 -30.84 16 15 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 18 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H 0.06 0.91 7.94 -2.39 -0.02 0.89 16 23 H 0.04 0.80 8.09 -2.39 -0.02 0.78 16 24 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.11 1.89 7.94 -2.38 -0.02 1.87 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.45 7.88 -2.38 -0.02 2.43 16 31 H 0.01 0.56 7.65 -2.39 -0.02 0.54 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 33 H 0.33 14.06 8.72 -89.69 -0.78 13.27 16 34 H -0.04 -2.65 8.14 -2.39 -0.02 -2.67 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.50 295.10 0.38 -66.13 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.26 Total: 14.98 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.99 Total: -14.25 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -2.84 Total: -90.55 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -3.06 Total: -22.95 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.50 0.38 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.627 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds