Wall clock time and date at job start Sun Mar 29 2020 21:31:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.42889 * 113.99981 * 2 1
4 4 C 1.53004 * 109.47263 * 180.02562 * 3 2 1
5 5 C 1.53004 * 109.47240 * 180.02562 * 4 3 2
6 6 N 1.46899 * 109.46867 * 179.97438 * 5 4 3
7 7 C 1.48535 * 111.00098 * 287.39520 * 6 5 4
8 8 C 1.55103 * 103.28125 * 200.33413 * 7 6 5
9 9 C 1.54601 * 102.84538 * 37.30582 * 8 7 6
10 10 O 1.42899 * 110.30773 * 97.11731 * 9 8 7
11 11 C 1.50700 * 110.30664 * 219.18372 * 9 8 7
12 12 H 1.07999 * 119.99988 * 117.20955 * 11 9 8
13 13 C 1.37885 * 120.00047 * 297.21135 * 11 9 8
14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 9
15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 9
16 16 H 1.48503 * 109.47163 * 59.99902 * 15 13 11
17 17 H 1.48495 * 109.47159 * 179.97438 * 15 13 11
18 18 H 1.48505 * 109.47290 * 299.99897 * 15 13 11
19 19 C 1.47908 * 110.99869 * 169.99687 * 6 5 4
20 20 H 1.08999 * 109.46898 * 300.00115 * 1 2 3
21 21 H 1.08996 * 109.47260 * 59.99969 * 1 2 3
22 22 H 1.09003 * 109.46847 * 180.02562 * 1 2 3
23 23 H 1.09003 * 109.47732 * 60.00111 * 3 2 1
24 24 H 1.09005 * 109.47489 * 299.99786 * 3 2 1
25 25 H 1.08997 * 109.46981 * 59.99731 * 4 3 2
26 26 H 1.09001 * 109.46415 * 299.99597 * 4 3 2
27 27 H 1.08997 * 109.47170 * 59.99432 * 5 4 3
28 28 H 1.08999 * 109.46733 * 299.99873 * 5 4 3
29 29 H 1.08996 * 110.66618 * 318.71599 * 7 6 5
30 30 H 1.08994 * 110.66413 * 81.67735 * 7 6 5
31 31 H 1.09003 * 110.70696 * 278.99712 * 8 7 6
32 32 H 1.09005 * 110.80877 * 155.66092 * 8 7 6
33 33 H 0.96699 * 114.00025 * 62.78843 * 10 9 8
34 34 H 0.97000 * 119.99468 * 179.97438 * 14 13 11
35 35 H 1.09001 * 109.91016 * 26.49117 * 19 6 5
36 36 H 1.08993 * 109.91789 * 265.20266 * 19 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 6 4.1578 2.5824 0.0000
6 7 5.6222 2.4663 0.0000
7 6 6.1201 2.0104 1.3231
8 6 7.6084 2.4470 1.3135
9 6 7.5633 3.8057 0.5773
10 8 7.5379 4.8797 1.5196
11 6 8.7513 3.9434 -0.3396
12 1 8.6032 4.0304 -1.4058
13 6 10.0273 3.9584 0.1828
14 7 10.2073 3.8579 1.4817
15 14 11.4998 4.1298 -0.9537
16 1 11.4026 5.4100 -1.7001
17 1 12.7488 4.1192 -0.1506
18 1 11.5185 2.9972 -1.9140
19 6 6.2580 3.7802 -0.2392
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5138 -0.8899
22 1 -0.3633 -1.0277 0.0005
23 1 1.6887 1.8464 0.8900
24 1 1.6887 1.8463 -0.8900
25 1 3.8568 0.6438 -0.8908
26 1 3.8574 0.6436 0.8892
27 1 3.8365 3.1227 0.8904
28 1 3.8358 3.1238 -0.8895
29 1 5.5800 2.5069 2.1292
30 1 6.0343 0.9277 1.4141
31 1 8.2169 1.7298 0.7626
32 1 7.9821 2.5712 2.3299
33 1 8.3261 4.9323 2.0773
34 1 11.1049 3.8680 1.8491
35 1 5.5958 4.5792 0.0940
36 1 6.4810 3.8971 -1.2997
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592146976.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:55
Heat of formation + Delta-G solvation = -99.641435 kcal
Electronic energy + Delta-G solvation = -16412.232966 eV
Core-core repulsion = 13703.198409 eV
Total energy + Delta-G solvation = -2709.034557 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.56228 -37.84647 -35.14856 -32.47375 -32.05628 -29.14991 -28.00962 -26.75258
-24.93006 -23.50909 -21.56107 -20.05166 -19.32911 -17.05233 -16.49199 -16.21432
-15.38622 -14.87149 -14.76875 -14.47242 -14.07447 -13.83082 -13.02606 -12.56817
-12.19353 -12.03871 -11.84165 -11.60324 -11.32912 -11.14713 -10.93450 -10.83294
-10.65468 -10.48203 -10.35474 -10.23348 -9.88832 -9.74657 -9.11718 -8.54943
-8.07847 -7.76214 -6.16244 -4.22321 3.28563 3.32707 3.36235 3.62983
4.35490 4.66679 5.00426 5.07319 5.12309 5.18763 5.31408 5.39881
5.45865 5.49491 5.65864 5.76342 5.88329 6.05139 6.12495 6.26978
6.32872 6.35179 6.50352 6.55168 6.96692 7.07442 7.10085 7.33144
7.56041 7.69893 7.75609 7.88378 8.20379 8.79012 9.44111 9.54432
10.91452
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.058942 B = 0.005009 C = 0.004919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 474.931856 B = 5589.039284 C = 5691.078613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.392 6.392
3 C 0.063 3.937
4 C -0.112 4.112
5 C 0.051 3.949
6 N -0.514 5.514
7 C 0.030 3.970
8 C -0.117 4.117
9 C 0.242 3.758
10 O -0.595 6.595
11 C -0.529 4.529
12 H 0.061 0.939
13 C 0.068 3.932
14 N -0.900 5.900
15 Si 0.901 3.099
16 H -0.276 1.276
17 H -0.287 1.287
18 H -0.275 1.275
19 C 0.055 3.945
20 H 0.039 0.961
21 H 0.039 0.961
22 H 0.083 0.917
23 H 0.046 0.954
24 H 0.048 0.952
25 H 0.078 0.922
26 H 0.069 0.931
27 H 0.031 0.969
28 H 0.069 0.931
29 H 0.032 0.968
30 H 0.065 0.935
31 H 0.067 0.933
32 H 0.064 0.936
33 H 0.382 0.618
34 H 0.267 0.733
35 H 0.035 0.965
36 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.182 -4.296 -0.887 13.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.311 6.311
3 C -0.014 4.014
4 C -0.150 4.150
5 C -0.078 4.078
6 N -0.239 5.239
7 C -0.097 4.097
8 C -0.156 4.156
9 C 0.202 3.798
10 O -0.405 6.405
11 C -0.567 4.567
12 H 0.080 0.920
13 C -0.134 4.134
14 N -0.540 5.540
15 Si 0.728 3.272
16 H -0.202 1.202
17 H -0.212 1.212
18 H -0.201 1.201
19 C -0.072 4.072
20 H 0.058 0.942
21 H 0.058 0.942
22 H 0.102 0.898
23 H 0.065 0.935
24 H 0.067 0.933
25 H 0.097 0.903
26 H 0.088 0.912
27 H 0.050 0.950
28 H 0.087 0.913
29 H 0.051 0.949
30 H 0.083 0.917
31 H 0.086 0.914
32 H 0.083 0.917
33 H 0.233 0.767
34 H 0.077 0.923
35 H 0.053 0.947
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -13.378 -4.712 -1.445 14.257
hybrid contribution 0.891 0.761 0.352 1.223
sum -12.487 -3.952 -1.093 13.143
Atomic orbital electron populations
1.22716 0.81405 1.02523 0.99834 1.87884 1.19391 1.28446 1.95400
1.22546 0.94692 0.84251 0.99947 1.21442 0.91509 0.98040 1.03964
1.22109 0.89855 0.95467 1.00410 1.64730 1.03834 1.25847 1.29440
1.23365 0.98110 0.99090 0.89160 1.23001 0.91785 0.99830 1.00964
1.19360 0.90898 0.83446 0.86071 1.86088 1.46991 1.53896 1.53509
1.21669 0.90837 1.50368 0.93824 0.92037 1.25015 0.99116 0.93916
0.95314 1.69650 1.22788 1.50728 1.10861 0.86515 0.81265 0.78810
0.80583 1.20167 1.21244 1.20083 1.22842 0.95660 0.88070 1.00674
0.94242 0.94197 0.89806 0.93537 0.93342 0.90349 0.91223 0.95048
0.91293 0.94942 0.91651 0.91380 0.91696 0.76668 0.92345 0.94683
0.90315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 11.01 101.05 1.11 1.40 16
2 O -0.39 -5.06 10.70 -35.23 -0.38 -5.44 16
3 C 0.06 0.76 5.94 37.16 0.22 0.98 16
4 C -0.11 -1.58 5.68 -26.73 -0.15 -1.73 16
5 C 0.05 0.81 4.71 -3.82 -0.02 0.79 16
6 N -0.51 -10.20 5.25 -230.35 -1.21 -11.41 16
7 C 0.03 0.61 5.91 -1.81 -0.01 0.60 16
8 C -0.12 -2.78 5.42 -24.78 -0.13 -2.91 16
9 C 0.24 6.14 0.99 -90.42 -0.09 6.06 16
10 O -0.60 -15.77 12.92 -35.23 -0.46 -16.22 16
11 C -0.53 -14.45 8.11 -34.44 -0.28 -14.73 16
12 H 0.06 1.67 7.34 -52.49 -0.39 1.29 16
13 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16
14 N -0.90 -24.33 10.88 55.43 0.60 -23.73 16
15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16
16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16
18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
19 C 0.05 1.23 6.13 -2.76 -0.02 1.21 16
20 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16
21 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16
22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
26 H 0.07 1.03 7.36 -51.93 -0.38 0.65 16
27 H 0.03 0.50 7.83 -51.93 -0.41 0.09 16
28 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16
29 H 0.03 0.64 7.81 -51.93 -0.41 0.24 16
30 H 0.07 1.20 7.79 -51.93 -0.40 0.80 16
31 H 0.07 1.71 7.86 -51.93 -0.41 1.30 16
32 H 0.06 1.59 8.02 -51.93 -0.42 1.17 16
33 H 0.38 10.24 7.18 45.56 0.33 10.57 16
34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
35 H 0.03 0.77 7.59 -51.93 -0.39 0.37 16
36 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16
LS Contribution 291.18 15.07 4.39 4.39
Total: -1.00 -28.42 291.18 -6.88 -35.30
By element:
Atomic # 1 Polarization: 13.12 SS G_CDS: -5.35 Total: 7.77 kcal
Atomic # 6 Polarization: -7.15 SS G_CDS: 0.54 Total: -6.61 kcal
Atomic # 7 Polarization: -34.53 SS G_CDS: -0.61 Total: -35.14 kcal
Atomic # 8 Polarization: -20.83 SS G_CDS: -0.83 Total: -21.66 kcal
Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -28.42 -6.88 -35.30 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592146976.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.342 kcal
(2) G-P(sol) polarization free energy of solvation -28.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.759 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.641 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds