Wall clock time and date at job start Sun Mar 29 2020 21:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42889 * 113.99981 * 2 1 4 4 C 1.53004 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47240 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.46867 * 179.97438 * 5 4 3 7 7 C 1.48535 * 111.00098 * 287.39520 * 6 5 4 8 8 C 1.55103 * 103.28125 * 200.33413 * 7 6 5 9 9 C 1.54601 * 102.84538 * 37.30582 * 8 7 6 10 10 O 1.42899 * 110.30773 * 97.11731 * 9 8 7 11 11 C 1.50700 * 110.30664 * 219.18372 * 9 8 7 12 12 H 1.07999 * 119.99988 * 117.20955 * 11 9 8 13 13 C 1.37885 * 120.00047 * 297.21135 * 11 9 8 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 9 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47163 * 59.99902 * 15 13 11 17 17 H 1.48495 * 109.47159 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47290 * 299.99897 * 15 13 11 19 19 C 1.47908 * 110.99869 * 169.99687 * 6 5 4 20 20 H 1.08999 * 109.46898 * 300.00115 * 1 2 3 21 21 H 1.08996 * 109.47260 * 59.99969 * 1 2 3 22 22 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47732 * 60.00111 * 3 2 1 24 24 H 1.09005 * 109.47489 * 299.99786 * 3 2 1 25 25 H 1.08997 * 109.46981 * 59.99731 * 4 3 2 26 26 H 1.09001 * 109.46415 * 299.99597 * 4 3 2 27 27 H 1.08997 * 109.47170 * 59.99432 * 5 4 3 28 28 H 1.08999 * 109.46733 * 299.99873 * 5 4 3 29 29 H 1.08996 * 110.66618 * 318.71599 * 7 6 5 30 30 H 1.08994 * 110.66413 * 81.67735 * 7 6 5 31 31 H 1.09003 * 110.70696 * 278.99712 * 8 7 6 32 32 H 1.09005 * 110.80877 * 155.66092 * 8 7 6 33 33 H 0.96699 * 114.00025 * 62.78843 * 10 9 8 34 34 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.91016 * 26.49117 * 19 6 5 36 36 H 1.08993 * 109.91789 * 265.20266 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6222 2.4663 0.0000 7 6 6.1201 2.0104 1.3231 8 6 7.6084 2.4470 1.3135 9 6 7.5633 3.8057 0.5773 10 8 7.5379 4.8797 1.5196 11 6 8.7513 3.9434 -0.3396 12 1 8.6032 4.0304 -1.4058 13 6 10.0273 3.9584 0.1828 14 7 10.2073 3.8579 1.4817 15 14 11.4998 4.1298 -0.9537 16 1 11.4026 5.4100 -1.7001 17 1 12.7488 4.1192 -0.1506 18 1 11.5185 2.9972 -1.9140 19 6 6.2580 3.7802 -0.2392 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6887 1.8464 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8568 0.6438 -0.8908 26 1 3.8574 0.6436 0.8892 27 1 3.8365 3.1227 0.8904 28 1 3.8358 3.1238 -0.8895 29 1 5.5800 2.5069 2.1292 30 1 6.0343 0.9277 1.4141 31 1 8.2169 1.7298 0.7626 32 1 7.9821 2.5712 2.3299 33 1 8.3261 4.9323 2.0773 34 1 11.1049 3.8680 1.8491 35 1 5.5958 4.5792 0.0940 36 1 6.4810 3.8971 -1.2997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:55 Heat of formation + Delta-G solvation = -99.641435 kcal Electronic energy + Delta-G solvation = -16412.232966 eV Core-core repulsion = 13703.198409 eV Total energy + Delta-G solvation = -2709.034557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.56228 -37.84647 -35.14856 -32.47375 -32.05628 -29.14991 -28.00962 -26.75258 -24.93006 -23.50909 -21.56107 -20.05166 -19.32911 -17.05233 -16.49199 -16.21432 -15.38622 -14.87149 -14.76875 -14.47242 -14.07447 -13.83082 -13.02606 -12.56817 -12.19353 -12.03871 -11.84165 -11.60324 -11.32912 -11.14713 -10.93450 -10.83294 -10.65468 -10.48203 -10.35474 -10.23348 -9.88832 -9.74657 -9.11718 -8.54943 -8.07847 -7.76214 -6.16244 -4.22321 3.28563 3.32707 3.36235 3.62983 4.35490 4.66679 5.00426 5.07319 5.12309 5.18763 5.31408 5.39881 5.45865 5.49491 5.65864 5.76342 5.88329 6.05139 6.12495 6.26978 6.32872 6.35179 6.50352 6.55168 6.96692 7.07442 7.10085 7.33144 7.56041 7.69893 7.75609 7.88378 8.20379 8.79012 9.44111 9.54432 10.91452 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.058942 B = 0.005009 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.931856 B = 5589.039284 C = 5691.078613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.112 4.112 5 C 0.051 3.949 6 N -0.514 5.514 7 C 0.030 3.970 8 C -0.117 4.117 9 C 0.242 3.758 10 O -0.595 6.595 11 C -0.529 4.529 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.055 3.945 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.083 0.917 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.382 0.618 34 H 0.267 0.733 35 H 0.035 0.965 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.182 -4.296 -0.887 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.014 4.014 4 C -0.150 4.150 5 C -0.078 4.078 6 N -0.239 5.239 7 C -0.097 4.097 8 C -0.156 4.156 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.567 4.567 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.072 4.072 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.102 0.898 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.233 0.767 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.378 -4.712 -1.445 14.257 hybrid contribution 0.891 0.761 0.352 1.223 sum -12.487 -3.952 -1.093 13.143 Atomic orbital electron populations 1.22716 0.81405 1.02523 0.99834 1.87884 1.19391 1.28446 1.95400 1.22546 0.94692 0.84251 0.99947 1.21442 0.91509 0.98040 1.03964 1.22109 0.89855 0.95467 1.00410 1.64730 1.03834 1.25847 1.29440 1.23365 0.98110 0.99090 0.89160 1.23001 0.91785 0.99830 1.00964 1.19360 0.90898 0.83446 0.86071 1.86088 1.46991 1.53896 1.53509 1.21669 0.90837 1.50368 0.93824 0.92037 1.25015 0.99116 0.93916 0.95314 1.69650 1.22788 1.50728 1.10861 0.86515 0.81265 0.78810 0.80583 1.20167 1.21244 1.20083 1.22842 0.95660 0.88070 1.00674 0.94242 0.94197 0.89806 0.93537 0.93342 0.90349 0.91223 0.95048 0.91293 0.94942 0.91651 0.91380 0.91696 0.76668 0.92345 0.94683 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.06 10.70 -35.23 -0.38 -5.44 16 3 C 0.06 0.76 5.94 37.16 0.22 0.98 16 4 C -0.11 -1.58 5.68 -26.73 -0.15 -1.73 16 5 C 0.05 0.81 4.71 -3.82 -0.02 0.79 16 6 N -0.51 -10.20 5.25 -230.35 -1.21 -11.41 16 7 C 0.03 0.61 5.91 -1.81 -0.01 0.60 16 8 C -0.12 -2.78 5.42 -24.78 -0.13 -2.91 16 9 C 0.24 6.14 0.99 -90.42 -0.09 6.06 16 10 O -0.60 -15.77 12.92 -35.23 -0.46 -16.22 16 11 C -0.53 -14.45 8.11 -34.44 -0.28 -14.73 16 12 H 0.06 1.67 7.34 -52.49 -0.39 1.29 16 13 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 14 N -0.90 -24.33 10.88 55.43 0.60 -23.73 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 C 0.05 1.23 6.13 -2.76 -0.02 1.21 16 20 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 21 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.03 7.36 -51.93 -0.38 0.65 16 27 H 0.03 0.50 7.83 -51.93 -0.41 0.09 16 28 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.03 0.64 7.81 -51.93 -0.41 0.24 16 30 H 0.07 1.20 7.79 -51.93 -0.40 0.80 16 31 H 0.07 1.71 7.86 -51.93 -0.41 1.30 16 32 H 0.06 1.59 8.02 -51.93 -0.42 1.17 16 33 H 0.38 10.24 7.18 45.56 0.33 10.57 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.03 0.77 7.59 -51.93 -0.39 0.37 16 36 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 LS Contribution 291.18 15.07 4.39 4.39 Total: -1.00 -28.42 291.18 -6.88 -35.30 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.35 Total: 7.77 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 0.54 Total: -6.61 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.61 Total: -35.14 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.83 Total: -21.66 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.42 -6.88 -35.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.342 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds