Wall clock time and date at job start Sun Mar 29 2020 21:31:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.42889 * 113.99981 * 2 1
4 4 C 1.53004 * 109.47263 * 180.02562 * 3 2 1
5 5 C 1.53004 * 109.47240 * 180.02562 * 4 3 2
6 6 N 1.46899 * 109.46867 * 179.97438 * 5 4 3
7 7 C 1.48535 * 111.00098 * 287.39520 * 6 5 4
8 8 C 1.55103 * 103.28125 * 200.33413 * 7 6 5
9 9 C 1.54601 * 102.84538 * 37.30582 * 8 7 6
10 10 O 1.42899 * 110.30773 * 97.11731 * 9 8 7
11 11 C 1.50700 * 110.30664 * 219.18372 * 9 8 7
12 12 H 1.07999 * 119.99988 * 117.20955 * 11 9 8
13 13 C 1.37885 * 120.00047 * 297.21135 * 11 9 8
14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 9
15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 9
16 16 H 1.48503 * 109.47163 * 59.99902 * 15 13 11
17 17 H 1.48495 * 109.47159 * 179.97438 * 15 13 11
18 18 H 1.48505 * 109.47290 * 299.99897 * 15 13 11
19 19 C 1.47908 * 110.99869 * 169.99687 * 6 5 4
20 20 H 1.08999 * 109.46898 * 300.00115 * 1 2 3
21 21 H 1.08996 * 109.47260 * 59.99969 * 1 2 3
22 22 H 1.09003 * 109.46847 * 180.02562 * 1 2 3
23 23 H 1.09003 * 109.47732 * 60.00111 * 3 2 1
24 24 H 1.09005 * 109.47489 * 299.99786 * 3 2 1
25 25 H 1.08997 * 109.46981 * 59.99731 * 4 3 2
26 26 H 1.09001 * 109.46415 * 299.99597 * 4 3 2
27 27 H 1.08997 * 109.47170 * 59.99432 * 5 4 3
28 28 H 1.08999 * 109.46733 * 299.99873 * 5 4 3
29 29 H 1.08996 * 110.66618 * 318.71599 * 7 6 5
30 30 H 1.08994 * 110.66413 * 81.67735 * 7 6 5
31 31 H 1.09003 * 110.70696 * 278.99712 * 8 7 6
32 32 H 1.09005 * 110.80877 * 155.66092 * 8 7 6
33 33 H 0.96699 * 114.00025 * 62.78843 * 10 9 8
34 34 H 0.97000 * 119.99468 * 179.97438 * 14 13 11
35 35 H 1.09001 * 109.91016 * 26.49117 * 19 6 5
36 36 H 1.08993 * 109.91789 * 265.20266 * 19 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 6 4.1578 2.5824 0.0000
6 7 5.6222 2.4663 0.0000
7 6 6.1201 2.0104 1.3231
8 6 7.6084 2.4470 1.3135
9 6 7.5633 3.8057 0.5773
10 8 7.5379 4.8797 1.5196
11 6 8.7513 3.9434 -0.3396
12 1 8.6032 4.0304 -1.4058
13 6 10.0273 3.9584 0.1828
14 7 10.2073 3.8579 1.4817
15 14 11.4998 4.1298 -0.9537
16 1 11.4026 5.4100 -1.7001
17 1 12.7488 4.1192 -0.1506
18 1 11.5185 2.9972 -1.9140
19 6 6.2580 3.7802 -0.2392
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5138 -0.8899
22 1 -0.3633 -1.0277 0.0005
23 1 1.6887 1.8464 0.8900
24 1 1.6887 1.8463 -0.8900
25 1 3.8568 0.6438 -0.8908
26 1 3.8574 0.6436 0.8892
27 1 3.8365 3.1227 0.8904
28 1 3.8358 3.1238 -0.8895
29 1 5.5800 2.5069 2.1292
30 1 6.0343 0.9277 1.4141
31 1 8.2169 1.7298 0.7626
32 1 7.9821 2.5712 2.3299
33 1 8.3261 4.9323 2.0773
34 1 11.1049 3.8680 1.8491
35 1 5.5958 4.5792 0.0940
36 1 6.4810 3.8971 -1.2997
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592146976.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:55
Heat of formation + Delta-G solvation = -121.234566 kcal
Electronic energy + Delta-G solvation = -16413.169314 eV
Core-core repulsion = 13703.198409 eV
Total energy + Delta-G solvation = -2709.970905 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.19459 -38.85844 -36.89019 -34.13791 -33.87222 -30.70994 -29.82725 -27.75276
-26.53006 -24.95256 -22.89046 -21.56540 -21.22827 -19.09622 -17.51907 -17.17420
-16.88385 -16.70071 -16.18736 -15.91030 -15.57234 -15.39873 -14.39352 -14.13700
-13.99354 -13.56792 -13.30450 -13.11348 -12.81497 -12.60194 -12.54493 -12.38079
-12.29149 -12.01317 -11.96897 -11.83291 -11.65506 -11.05468 -10.60188 -10.59264
-10.10230 -9.34600 -8.20497 -6.34341 1.43292 1.43563 1.51688 2.40387
2.67322 3.04081 3.28251 3.88941 3.97981 4.13923 4.19455 4.34114
4.36452 4.47830 4.47983 4.53870 4.56857 4.58266 4.69727 4.70822
4.84377 4.87256 5.07871 5.16407 5.21522 5.29886 5.42550 5.60692
5.77543 5.98051 6.15762 6.20561 6.29898 6.69894 7.35241 7.44092
8.85428
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.058942 B = 0.005009 C = 0.004919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 474.931856 B = 5589.039284 C = 5691.078613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.419 6.419
3 C 0.067 3.933
4 C -0.104 4.104
5 C 0.051 3.949
6 N -0.520 5.520
7 C 0.042 3.958
8 C -0.110 4.110
9 C 0.225 3.775
10 O -0.602 6.602
11 C -0.557 4.557
12 H 0.054 0.946
13 C 0.027 3.973
14 N -0.915 5.915
15 Si 0.961 3.039
16 H -0.274 1.274
17 H -0.280 1.280
18 H -0.273 1.273
19 C 0.062 3.938
20 H 0.049 0.951
21 H 0.051 0.949
22 H 0.096 0.904
23 H 0.057 0.943
24 H 0.062 0.938
25 H 0.069 0.931
26 H 0.061 0.939
27 H 0.037 0.963
28 H 0.082 0.918
29 H 0.038 0.962
30 H 0.085 0.915
31 H 0.046 0.954
32 H 0.049 0.951
33 H 0.377 0.623
34 H 0.269 0.731
35 H 0.037 0.963
36 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.288 -4.639 -1.350 15.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.338 6.338
3 C -0.010 4.010
4 C -0.142 4.142
5 C -0.077 4.077
6 N -0.245 5.245
7 C -0.086 4.086
8 C -0.149 4.149
9 C 0.185 3.815
10 O -0.411 6.411
11 C -0.595 4.595
12 H 0.073 0.927
13 C -0.173 4.173
14 N -0.555 5.555
15 Si 0.786 3.214
16 H -0.199 1.199
17 H -0.206 1.206
18 H -0.198 1.198
19 C -0.065 4.065
20 H 0.068 0.932
21 H 0.070 0.930
22 H 0.115 0.885
23 H 0.075 0.925
24 H 0.080 0.920
25 H 0.088 0.912
26 H 0.080 0.920
27 H 0.055 0.945
28 H 0.101 0.899
29 H 0.057 0.943
30 H 0.103 0.897
31 H 0.065 0.935
32 H 0.068 0.932
33 H 0.227 0.773
34 H 0.078 0.922
35 H 0.055 0.945
36 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -14.509 -5.060 -1.909 15.484
hybrid contribution 1.196 0.857 0.508 1.557
sum -13.313 -4.203 -1.401 14.030
Atomic orbital electron populations
1.22932 0.79432 1.03813 1.00900 1.87835 1.21589 1.28798 1.95625
1.22467 0.93026 0.84406 1.01129 1.21316 0.93225 0.96469 1.03149
1.22186 0.87230 0.96961 1.01312 1.64712 1.06324 1.24261 1.29175
1.23261 0.95413 1.00293 0.89623 1.22785 0.94075 0.98693 0.99361
1.19633 0.92021 0.83696 0.86150 1.86078 1.46638 1.54681 1.53675
1.21947 0.92231 1.51400 0.93908 0.92741 1.25710 1.01409 0.93451
0.96721 1.69732 1.23350 1.50512 1.11902 0.85575 0.78274 0.78685
0.78850 1.19932 1.20561 1.19802 1.22672 0.94545 0.89534 0.99785
0.93217 0.93046 0.88542 0.92504 0.91989 0.91208 0.91996 0.94517
0.89941 0.94349 0.89669 0.93508 0.93194 0.77299 0.92172 0.94482
0.90791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 11.01 113.37 1.25 1.64 16
2 O -0.42 -9.91 10.70 -148.98 -1.59 -11.51 16
3 C 0.07 1.45 5.94 71.98 0.43 1.87 16
4 C -0.10 -2.73 5.68 30.60 0.17 -2.56 16
5 C 0.05 1.53 4.71 86.30 0.41 1.94 16
6 N -0.52 -19.99 5.25 -882.69 -4.63 -24.62 16
7 C 0.04 1.63 5.91 86.71 0.51 2.14 16
8 C -0.11 -5.27 5.42 31.86 0.17 -5.10 16
9 C 0.22 11.48 0.99 -10.66 -0.01 11.47 16
10 O -0.60 -32.20 12.92 -148.98 -1.93 -34.12 16
11 C -0.56 -30.74 8.11 25.60 0.21 -30.53 16
12 H 0.05 3.00 7.34 -2.91 -0.02 2.97 16
13 C 0.03 1.46 5.26 84.66 0.45 1.90 16
14 N -0.91 -49.80 10.88 21.45 0.23 -49.57 16
15 Si 0.96 42.96 29.54 68.60 2.03 44.98 16
16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
19 C 0.06 2.76 6.13 86.44 0.53 3.29 16
20 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
22 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
23 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16
24 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16
25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
26 H 0.06 1.72 7.36 -2.39 -0.02 1.70 16
27 H 0.04 1.08 7.83 -2.39 -0.02 1.06 16
28 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16
29 H 0.04 1.46 7.81 -2.39 -0.02 1.44 16
30 H 0.09 3.00 7.79 -2.39 -0.02 2.98 16
31 H 0.05 2.39 7.86 -2.39 -0.02 2.37 16
32 H 0.05 2.48 8.02 -2.38 -0.02 2.46 16
33 H 0.38 20.60 7.18 -74.06 -0.53 20.06 16
34 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16
35 H 0.04 1.59 7.59 -2.39 -0.02 1.58 16
36 H 0.07 3.30 7.39 -2.39 -0.02 3.28 16
Total: -1.00 -59.65 291.18 -1.26 -60.91
By element:
Atomic # 1 Polarization: 27.34 SS G_CDS: 0.51 Total: 27.85 kcal
Atomic # 6 Polarization: -18.05 SS G_CDS: 4.11 Total: -13.94 kcal
Atomic # 7 Polarization: -69.79 SS G_CDS: -4.40 Total: -74.19 kcal
Atomic # 8 Polarization: -42.11 SS G_CDS: -3.52 Total: -45.63 kcal
Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal
Total: -59.65 -1.26 -60.91 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592146976.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.322 kcal
(2) G-P(sol) polarization free energy of solvation -59.650 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.972 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds