Wall clock time and date at job start Sun Mar 29 2020 21:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42889 * 113.99981 * 2 1 4 4 C 1.53004 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47240 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.46867 * 179.97438 * 5 4 3 7 7 C 1.48535 * 111.00098 * 287.39520 * 6 5 4 8 8 C 1.55103 * 103.28125 * 200.33413 * 7 6 5 9 9 C 1.54601 * 102.84538 * 37.30582 * 8 7 6 10 10 O 1.42899 * 110.30773 * 97.11731 * 9 8 7 11 11 C 1.50700 * 110.30664 * 219.18372 * 9 8 7 12 12 H 1.07999 * 119.99988 * 117.20955 * 11 9 8 13 13 C 1.37885 * 120.00047 * 297.21135 * 11 9 8 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 9 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47163 * 59.99902 * 15 13 11 17 17 H 1.48495 * 109.47159 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47290 * 299.99897 * 15 13 11 19 19 C 1.47908 * 110.99869 * 169.99687 * 6 5 4 20 20 H 1.08999 * 109.46898 * 300.00115 * 1 2 3 21 21 H 1.08996 * 109.47260 * 59.99969 * 1 2 3 22 22 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47732 * 60.00111 * 3 2 1 24 24 H 1.09005 * 109.47489 * 299.99786 * 3 2 1 25 25 H 1.08997 * 109.46981 * 59.99731 * 4 3 2 26 26 H 1.09001 * 109.46415 * 299.99597 * 4 3 2 27 27 H 1.08997 * 109.47170 * 59.99432 * 5 4 3 28 28 H 1.08999 * 109.46733 * 299.99873 * 5 4 3 29 29 H 1.08996 * 110.66618 * 318.71599 * 7 6 5 30 30 H 1.08994 * 110.66413 * 81.67735 * 7 6 5 31 31 H 1.09003 * 110.70696 * 278.99712 * 8 7 6 32 32 H 1.09005 * 110.80877 * 155.66092 * 8 7 6 33 33 H 0.96699 * 114.00025 * 62.78843 * 10 9 8 34 34 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.91016 * 26.49117 * 19 6 5 36 36 H 1.08993 * 109.91789 * 265.20266 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6222 2.4663 0.0000 7 6 6.1201 2.0104 1.3231 8 6 7.6084 2.4470 1.3135 9 6 7.5633 3.8057 0.5773 10 8 7.5379 4.8797 1.5196 11 6 8.7513 3.9434 -0.3396 12 1 8.6032 4.0304 -1.4058 13 6 10.0273 3.9584 0.1828 14 7 10.2073 3.8579 1.4817 15 14 11.4998 4.1298 -0.9537 16 1 11.4026 5.4100 -1.7001 17 1 12.7488 4.1192 -0.1506 18 1 11.5185 2.9972 -1.9140 19 6 6.2580 3.7802 -0.2392 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6887 1.8464 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8568 0.6438 -0.8908 26 1 3.8574 0.6436 0.8892 27 1 3.8365 3.1227 0.8904 28 1 3.8358 3.1238 -0.8895 29 1 5.5800 2.5069 2.1292 30 1 6.0343 0.9277 1.4141 31 1 8.2169 1.7298 0.7626 32 1 7.9821 2.5712 2.3299 33 1 8.3261 4.9323 2.0773 34 1 11.1049 3.8680 1.8491 35 1 5.5958 4.5792 0.0940 36 1 6.4810 3.8971 -1.2997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:55 Heat of formation + Delta-G solvation = -121.234566 kcal Electronic energy + Delta-G solvation = -16413.169314 eV Core-core repulsion = 13703.198409 eV Total energy + Delta-G solvation = -2709.970905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19459 -38.85844 -36.89019 -34.13791 -33.87222 -30.70994 -29.82725 -27.75276 -26.53006 -24.95256 -22.89046 -21.56540 -21.22827 -19.09622 -17.51907 -17.17420 -16.88385 -16.70071 -16.18736 -15.91030 -15.57234 -15.39873 -14.39352 -14.13700 -13.99354 -13.56792 -13.30450 -13.11348 -12.81497 -12.60194 -12.54493 -12.38079 -12.29149 -12.01317 -11.96897 -11.83291 -11.65506 -11.05468 -10.60188 -10.59264 -10.10230 -9.34600 -8.20497 -6.34341 1.43292 1.43563 1.51688 2.40387 2.67322 3.04081 3.28251 3.88941 3.97981 4.13923 4.19455 4.34114 4.36452 4.47830 4.47983 4.53870 4.56857 4.58266 4.69727 4.70822 4.84377 4.87256 5.07871 5.16407 5.21522 5.29886 5.42550 5.60692 5.77543 5.98051 6.15762 6.20561 6.29898 6.69894 7.35241 7.44092 8.85428 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.058942 B = 0.005009 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.931856 B = 5589.039284 C = 5691.078613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.067 3.933 4 C -0.104 4.104 5 C 0.051 3.949 6 N -0.520 5.520 7 C 0.042 3.958 8 C -0.110 4.110 9 C 0.225 3.775 10 O -0.602 6.602 11 C -0.557 4.557 12 H 0.054 0.946 13 C 0.027 3.973 14 N -0.915 5.915 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.273 1.273 19 C 0.062 3.938 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.377 0.623 34 H 0.269 0.731 35 H 0.037 0.963 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 -4.639 -1.350 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.010 4.010 4 C -0.142 4.142 5 C -0.077 4.077 6 N -0.245 5.245 7 C -0.086 4.086 8 C -0.149 4.149 9 C 0.185 3.815 10 O -0.411 6.411 11 C -0.595 4.595 12 H 0.073 0.927 13 C -0.173 4.173 14 N -0.555 5.555 15 Si 0.786 3.214 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.198 1.198 19 C -0.065 4.065 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.115 0.885 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.227 0.773 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.509 -5.060 -1.909 15.484 hybrid contribution 1.196 0.857 0.508 1.557 sum -13.313 -4.203 -1.401 14.030 Atomic orbital electron populations 1.22932 0.79432 1.03813 1.00900 1.87835 1.21589 1.28798 1.95625 1.22467 0.93026 0.84406 1.01129 1.21316 0.93225 0.96469 1.03149 1.22186 0.87230 0.96961 1.01312 1.64712 1.06324 1.24261 1.29175 1.23261 0.95413 1.00293 0.89623 1.22785 0.94075 0.98693 0.99361 1.19633 0.92021 0.83696 0.86150 1.86078 1.46638 1.54681 1.53675 1.21947 0.92231 1.51400 0.93908 0.92741 1.25710 1.01409 0.93451 0.96721 1.69732 1.23350 1.50512 1.11902 0.85575 0.78274 0.78685 0.78850 1.19932 1.20561 1.19802 1.22672 0.94545 0.89534 0.99785 0.93217 0.93046 0.88542 0.92504 0.91989 0.91208 0.91996 0.94517 0.89941 0.94349 0.89669 0.93508 0.93194 0.77299 0.92172 0.94482 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.91 10.70 -148.98 -1.59 -11.51 16 3 C 0.07 1.45 5.94 71.98 0.43 1.87 16 4 C -0.10 -2.73 5.68 30.60 0.17 -2.56 16 5 C 0.05 1.53 4.71 86.30 0.41 1.94 16 6 N -0.52 -19.99 5.25 -882.69 -4.63 -24.62 16 7 C 0.04 1.63 5.91 86.71 0.51 2.14 16 8 C -0.11 -5.27 5.42 31.86 0.17 -5.10 16 9 C 0.22 11.48 0.99 -10.66 -0.01 11.47 16 10 O -0.60 -32.20 12.92 -148.98 -1.93 -34.12 16 11 C -0.56 -30.74 8.11 25.60 0.21 -30.53 16 12 H 0.05 3.00 7.34 -2.91 -0.02 2.97 16 13 C 0.03 1.46 5.26 84.66 0.45 1.90 16 14 N -0.91 -49.80 10.88 21.45 0.23 -49.57 16 15 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.06 2.76 6.13 86.44 0.53 3.29 16 20 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.72 7.36 -2.39 -0.02 1.70 16 27 H 0.04 1.08 7.83 -2.39 -0.02 1.06 16 28 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 29 H 0.04 1.46 7.81 -2.39 -0.02 1.44 16 30 H 0.09 3.00 7.79 -2.39 -0.02 2.98 16 31 H 0.05 2.39 7.86 -2.39 -0.02 2.37 16 32 H 0.05 2.48 8.02 -2.38 -0.02 2.46 16 33 H 0.38 20.60 7.18 -74.06 -0.53 20.06 16 34 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.04 1.59 7.59 -2.39 -0.02 1.58 16 36 H 0.07 3.30 7.39 -2.39 -0.02 3.28 16 Total: -1.00 -59.65 291.18 -1.26 -60.91 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.51 Total: 27.85 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.11 Total: -13.94 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -4.40 Total: -74.19 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -3.52 Total: -45.63 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -59.65 -1.26 -60.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.322 kcal (2) G-P(sol) polarization free energy of solvation -59.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds