Wall clock time and date at job start Sun Mar 29 2020 21:31:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42893 * 114.00267 * 2 1
4 4 C 1.53004 * 109.47438 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47231 * 180.02562 * 4 3 2
6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 3
7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4
8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5
9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6
10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7
11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7
12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8
13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8
14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9
15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9
16 16 H 1.48504 * 109.46901 * 60.00150 * 15 13 11
17 17 H 1.48501 * 109.47188 * 179.97438 * 15 13 11
18 18 H 1.48496 * 109.47596 * 299.99981 * 15 13 11
19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4
20 20 H 1.08992 * 109.47233 * 179.97438 * 1 2 3
21 21 H 1.08999 * 109.47096 * 300.00524 * 1 2 3
22 22 H 1.08997 * 109.46594 * 59.99821 * 1 2 3
23 23 H 1.09001 * 109.47572 * 59.99894 * 3 2 1
24 24 H 1.09002 * 109.47268 * 300.00176 * 3 2 1
25 25 H 1.09001 * 109.46812 * 59.99445 * 4 3 2
26 26 H 1.08997 * 109.46710 * 300.00004 * 4 3 2
27 27 H 1.08997 * 109.47422 * 59.99616 * 5 4 3
28 28 H 1.08999 * 109.46632 * 299.99620 * 5 4 3
29 29 H 1.09004 * 110.38960 * 40.24251 * 7 6 5
30 30 H 1.08996 * 110.50963 * 277.74694 * 7 6 5
31 31 H 1.09002 * 110.32526 * 217.32092 * 8 7 6
32 32 H 1.08998 * 110.32190 * 95.21733 * 8 7 6
33 33 H 0.96695 * 113.99929 * 298.55053 * 10 9 8
34 34 H 0.97002 * 119.99478 * 180.02562 * 14 13 11
35 35 H 1.08999 * 110.41133 * 82.17552 * 19 6 5
36 36 H 1.09001 * 110.41003 * 319.73948 * 19 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5356 1.1846 0.0006
5 6 4.1579 2.5823 0.0013
6 7 5.6223 2.4662 0.0013
7 6 6.1247 2.0545 -1.3366
8 6 7.6049 2.4930 -1.3458
9 6 7.6950 3.6301 -0.3073
10 8 8.1227 4.8414 -0.9334
11 6 8.6428 3.2523 0.8017
12 1 8.2830 3.1766 1.8172
13 6 9.9694 3.0035 0.5199
14 7 10.4076 3.0964 -0.7166
15 14 11.1444 2.5359 1.8947
16 1 10.6747 1.2853 2.5433
17 1 12.5026 2.3220 1.3337
18 1 11.1899 3.6280 2.9000
19 6 6.2609 3.7857 0.2427
20 1 -0.3633 -1.0276 -0.0005
21 1 -0.3633 0.5139 0.8899
22 1 -0.3632 0.5139 -0.8900
23 1 1.6887 1.8464 0.8900
24 1 1.6887 1.8463 -0.8900
25 1 3.8575 0.6434 -0.8891
26 1 3.8567 0.6438 0.8909
27 1 3.8358 3.1230 0.8912
28 1 3.8367 3.1233 -0.8887
29 1 5.5717 2.5666 -2.1240
30 1 6.0476 0.9740 -1.4576
31 1 7.8852 2.8592 -2.3335
32 1 8.2476 1.6624 -1.0543
33 1 9.0003 4.7876 -1.3358
34 1 11.3408 2.9210 -0.9148
35 1 6.2849 4.0068 1.3098
36 1 5.7296 4.5696 -0.2970
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592146988.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:57
Heat of formation + Delta-G solvation = -98.135710 kcal
Electronic energy + Delta-G solvation = -16438.630637 eV
Core-core repulsion = 13729.661374 eV
Total energy + Delta-G solvation = -2708.969263 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-38.54072 -37.83940 -35.16792 -32.51073 -32.04808 -29.14285 -27.91122 -26.72263
-24.92444 -23.55605 -21.55196 -20.06976 -19.31308 -16.97998 -16.48581 -16.21244
-15.43340 -14.83934 -14.74995 -14.54478 -13.98982 -13.73610 -13.08407 -12.57370
-12.23852 -12.13452 -11.82982 -11.55212 -11.30090 -11.12154 -10.93584 -10.86218
-10.60844 -10.47668 -10.33483 -10.23460 -9.86905 -9.74320 -8.99316 -8.51728
-8.08711 -7.79718 -6.11839 -4.17273 3.31675 3.35361 3.39443 3.63114
4.39576 4.63804 5.00677 5.07216 5.16091 5.19745 5.31180 5.40051
5.45888 5.49035 5.63966 5.77986 5.86713 6.00317 6.12045 6.23252
6.33333 6.33570 6.49379 6.55789 6.91112 7.08050 7.10775 7.26489
7.60286 7.71059 7.75807 7.90668 8.26792 8.84869 9.46877 9.55738
10.95714
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.042589 B = 0.005424 C = 0.005150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 657.290897 B = 5161.352032 C = 5435.366550
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.392 6.392
3 C 0.063 3.937
4 C -0.112 4.112
5 C 0.048 3.952
6 N -0.500 5.500
7 C 0.032 3.968
8 C -0.121 4.121
9 C 0.248 3.752
10 O -0.595 6.595
11 C -0.519 4.519
12 H 0.061 0.939
13 C 0.066 3.934
14 N -0.901 5.901
15 Si 0.900 3.100
16 H -0.276 1.276
17 H -0.288 1.288
18 H -0.277 1.277
19 C 0.053 3.947
20 H 0.083 0.917
21 H 0.039 0.961
22 H 0.039 0.961
23 H 0.048 0.952
24 H 0.046 0.954
25 H 0.069 0.931
26 H 0.079 0.921
27 H 0.069 0.931
28 H 0.030 0.970
29 H 0.028 0.972
30 H 0.066 0.934
31 H 0.050 0.950
32 H 0.075 0.925
33 H 0.382 0.618
34 H 0.266 0.734
35 H 0.076 0.924
36 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.775 -2.922 -0.538 14.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.311 6.311
3 C -0.014 4.014
4 C -0.149 4.149
5 C -0.081 4.081
6 N -0.225 5.225
7 C -0.096 4.096
8 C -0.160 4.160
9 C 0.209 3.791
10 O -0.404 6.404
11 C -0.557 4.557
12 H 0.080 0.920
13 C -0.136 4.136
14 N -0.542 5.542
15 Si 0.727 3.273
16 H -0.201 1.201
17 H -0.213 1.213
18 H -0.202 1.202
19 C -0.074 4.074
20 H 0.102 0.898
21 H 0.058 0.942
22 H 0.057 0.943
23 H 0.067 0.933
24 H 0.064 0.936
25 H 0.088 0.912
26 H 0.098 0.902
27 H 0.088 0.912
28 H 0.048 0.952
29 H 0.046 0.954
30 H 0.085 0.915
31 H 0.069 0.931
32 H 0.094 0.906
33 H 0.232 0.768
34 H 0.075 0.925
35 H 0.095 0.905
36 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -13.948 -3.282 -0.018 14.329
hybrid contribution 0.721 0.286 -0.174 0.795
sum -13.227 -2.996 -0.192 13.563
Atomic orbital electron populations
1.22714 0.81418 1.02529 0.99812 1.87889 1.19375 1.28438 1.95392
1.22544 0.94707 0.84256 0.99898 1.21428 0.91444 0.97996 1.04080
1.22110 0.90001 0.95574 1.00385 1.65279 1.03590 1.25828 1.27789
1.23213 0.97757 0.99637 0.88986 1.22852 0.92313 1.01525 0.99266
1.19256 0.89164 0.81251 0.89477 1.86080 1.39608 1.38106 1.76635
1.21614 0.93545 1.46047 0.94485 0.92031 1.25005 0.98278 0.94503
0.95764 1.69690 1.16154 1.50258 1.18079 0.86532 0.79567 0.79106
0.82058 1.20120 1.21325 1.20211 1.22979 0.95599 0.88234 1.00601
0.89804 0.94195 0.94267 0.93340 0.93594 0.91220 0.90240 0.91204
0.95174 0.95397 0.91508 0.93136 0.90612 0.76753 0.92452 0.90523
0.95190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 11.01 101.05 1.11 1.40 16
2 O -0.39 -5.09 10.70 -35.23 -0.38 -5.47 16
3 C 0.06 0.76 5.94 37.16 0.22 0.98 16
4 C -0.11 -1.59 5.70 -26.73 -0.15 -1.75 16
5 C 0.05 0.76 4.83 -3.82 -0.02 0.75 16
6 N -0.50 -10.01 5.34 -229.83 -1.23 -11.23 16
7 C 0.03 0.64 5.93 -2.09 -0.01 0.63 16
8 C -0.12 -2.87 5.55 -25.35 -0.14 -3.01 16
9 C 0.25 6.32 1.05 -90.39 -0.10 6.22 16
10 O -0.60 -15.77 12.94 -35.23 -0.46 -16.22 16
11 C -0.52 -14.25 8.10 -34.44 -0.28 -14.53 16
12 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16
13 C 0.07 1.77 5.02 -17.82 -0.09 1.68 16
14 N -0.90 -24.50 10.81 55.43 0.60 -23.91 16
15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16
16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
19 C 0.05 1.19 5.74 -2.18 -0.01 1.18 16
20 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
21 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16
22 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16
23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
25 H 0.07 1.04 7.47 -51.93 -0.39 0.65 16
26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16
27 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16
28 H 0.03 0.46 7.77 -51.93 -0.40 0.06 16
29 H 0.03 0.53 7.75 -51.93 -0.40 0.12 16
30 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16
31 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16
32 H 0.08 1.96 7.23 -51.93 -0.38 1.59 16
33 H 0.38 10.20 7.32 45.56 0.33 10.53 16
34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
35 H 0.08 1.71 7.67 -51.93 -0.40 1.31 16
36 H 0.03 0.65 7.94 -51.93 -0.41 0.23 16
LS Contribution 291.29 15.07 4.39 4.39
Total: -1.00 -28.67 291.29 -6.91 -35.59
By element:
Atomic # 1 Polarization: 12.49 SS G_CDS: -5.36 Total: 7.14 kcal
Atomic # 6 Polarization: -6.99 SS G_CDS: 0.53 Total: -6.45 kcal
Atomic # 7 Polarization: -34.51 SS G_CDS: -0.63 Total: -35.14 kcal
Atomic # 8 Polarization: -20.86 SS G_CDS: -0.83 Total: -21.69 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -28.67 -6.91 -35.59 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592146988.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.547 kcal
(2) G-P(sol) polarization free energy of solvation -28.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.136 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds