Wall clock time and date at job start Sun Mar 29 2020 21:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00267 * 2 1 4 4 C 1.53004 * 109.47438 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47231 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 3 7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46901 * 60.00150 * 15 13 11 17 17 H 1.48501 * 109.47188 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47596 * 299.99981 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4 20 20 H 1.08992 * 109.47233 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47096 * 300.00524 * 1 2 3 22 22 H 1.08997 * 109.46594 * 59.99821 * 1 2 3 23 23 H 1.09001 * 109.47572 * 59.99894 * 3 2 1 24 24 H 1.09002 * 109.47268 * 300.00176 * 3 2 1 25 25 H 1.09001 * 109.46812 * 59.99445 * 4 3 2 26 26 H 1.08997 * 109.46710 * 300.00004 * 4 3 2 27 27 H 1.08997 * 109.47422 * 59.99616 * 5 4 3 28 28 H 1.08999 * 109.46632 * 299.99620 * 5 4 3 29 29 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 30 30 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 31 31 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 32 32 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 33 33 H 0.96695 * 113.99929 * 298.55053 * 10 9 8 34 34 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 35 35 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 36 36 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 4.1579 2.5823 0.0013 6 7 5.6223 2.4662 0.0013 7 6 6.1247 2.0545 -1.3366 8 6 7.6049 2.4930 -1.3458 9 6 7.6950 3.6301 -0.3073 10 8 8.1227 4.8414 -0.9334 11 6 8.6428 3.2523 0.8017 12 1 8.2830 3.1766 1.8172 13 6 9.9694 3.0035 0.5199 14 7 10.4076 3.0964 -0.7166 15 14 11.1444 2.5359 1.8947 16 1 10.6747 1.2853 2.5433 17 1 12.5026 2.3220 1.3337 18 1 11.1899 3.6280 2.9000 19 6 6.2609 3.7857 0.2427 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.6887 1.8464 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8575 0.6434 -0.8891 26 1 3.8567 0.6438 0.8909 27 1 3.8358 3.1230 0.8912 28 1 3.8367 3.1233 -0.8887 29 1 5.5717 2.5666 -2.1240 30 1 6.0476 0.9740 -1.4576 31 1 7.8852 2.8592 -2.3335 32 1 8.2476 1.6624 -1.0543 33 1 9.0003 4.7876 -1.3358 34 1 11.3408 2.9210 -0.9148 35 1 6.2849 4.0068 1.3098 36 1 5.7296 4.5696 -0.2970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:57 Heat of formation + Delta-G solvation = -98.135710 kcal Electronic energy + Delta-G solvation = -16438.630637 eV Core-core repulsion = 13729.661374 eV Total energy + Delta-G solvation = -2708.969263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.54072 -37.83940 -35.16792 -32.51073 -32.04808 -29.14285 -27.91122 -26.72263 -24.92444 -23.55605 -21.55196 -20.06976 -19.31308 -16.97998 -16.48581 -16.21244 -15.43340 -14.83934 -14.74995 -14.54478 -13.98982 -13.73610 -13.08407 -12.57370 -12.23852 -12.13452 -11.82982 -11.55212 -11.30090 -11.12154 -10.93584 -10.86218 -10.60844 -10.47668 -10.33483 -10.23460 -9.86905 -9.74320 -8.99316 -8.51728 -8.08711 -7.79718 -6.11839 -4.17273 3.31675 3.35361 3.39443 3.63114 4.39576 4.63804 5.00677 5.07216 5.16091 5.19745 5.31180 5.40051 5.45888 5.49035 5.63966 5.77986 5.86713 6.00317 6.12045 6.23252 6.33333 6.33570 6.49379 6.55789 6.91112 7.08050 7.10775 7.26489 7.60286 7.71059 7.75807 7.90668 8.26792 8.84869 9.46877 9.55738 10.95714 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.005424 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.290897 B = 5161.352032 C = 5435.366550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.112 4.112 5 C 0.048 3.952 6 N -0.500 5.500 7 C 0.032 3.968 8 C -0.121 4.121 9 C 0.248 3.752 10 O -0.595 6.595 11 C -0.519 4.519 12 H 0.061 0.939 13 C 0.066 3.934 14 N -0.901 5.901 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.053 3.947 20 H 0.083 0.917 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.382 0.618 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 -2.922 -0.538 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.014 4.014 4 C -0.149 4.149 5 C -0.081 4.081 6 N -0.225 5.225 7 C -0.096 4.096 8 C -0.160 4.160 9 C 0.209 3.791 10 O -0.404 6.404 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.542 5.542 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.074 4.074 20 H 0.102 0.898 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.232 0.768 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.948 -3.282 -0.018 14.329 hybrid contribution 0.721 0.286 -0.174 0.795 sum -13.227 -2.996 -0.192 13.563 Atomic orbital electron populations 1.22714 0.81418 1.02529 0.99812 1.87889 1.19375 1.28438 1.95392 1.22544 0.94707 0.84256 0.99898 1.21428 0.91444 0.97996 1.04080 1.22110 0.90001 0.95574 1.00385 1.65279 1.03590 1.25828 1.27789 1.23213 0.97757 0.99637 0.88986 1.22852 0.92313 1.01525 0.99266 1.19256 0.89164 0.81251 0.89477 1.86080 1.39608 1.38106 1.76635 1.21614 0.93545 1.46047 0.94485 0.92031 1.25005 0.98278 0.94503 0.95764 1.69690 1.16154 1.50258 1.18079 0.86532 0.79567 0.79106 0.82058 1.20120 1.21325 1.20211 1.22979 0.95599 0.88234 1.00601 0.89804 0.94195 0.94267 0.93340 0.93594 0.91220 0.90240 0.91204 0.95174 0.95397 0.91508 0.93136 0.90612 0.76753 0.92452 0.90523 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.09 10.70 -35.23 -0.38 -5.47 16 3 C 0.06 0.76 5.94 37.16 0.22 0.98 16 4 C -0.11 -1.59 5.70 -26.73 -0.15 -1.75 16 5 C 0.05 0.76 4.83 -3.82 -0.02 0.75 16 6 N -0.50 -10.01 5.34 -229.83 -1.23 -11.23 16 7 C 0.03 0.64 5.93 -2.09 -0.01 0.63 16 8 C -0.12 -2.87 5.55 -25.35 -0.14 -3.01 16 9 C 0.25 6.32 1.05 -90.39 -0.10 6.22 16 10 O -0.60 -15.77 12.94 -35.23 -0.46 -16.22 16 11 C -0.52 -14.25 8.10 -34.44 -0.28 -14.53 16 12 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 13 C 0.07 1.77 5.02 -17.82 -0.09 1.68 16 14 N -0.90 -24.50 10.81 55.43 0.60 -23.91 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 C 0.05 1.19 5.74 -2.18 -0.01 1.18 16 20 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.04 7.47 -51.93 -0.39 0.65 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 28 H 0.03 0.46 7.77 -51.93 -0.40 0.06 16 29 H 0.03 0.53 7.75 -51.93 -0.40 0.12 16 30 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 31 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 32 H 0.08 1.96 7.23 -51.93 -0.38 1.59 16 33 H 0.38 10.20 7.32 45.56 0.33 10.53 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.08 1.71 7.67 -51.93 -0.40 1.31 16 36 H 0.03 0.65 7.94 -51.93 -0.41 0.23 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -28.67 291.29 -6.91 -35.59 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.36 Total: 7.14 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 0.53 Total: -6.45 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.63 Total: -35.14 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.83 Total: -21.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.67 -6.91 -35.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.547 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds