Wall clock time and date at job start Sun Mar 29 2020 21:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00267 * 2 1 4 4 C 1.53004 * 109.47438 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47231 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 3 7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46901 * 60.00150 * 15 13 11 17 17 H 1.48501 * 109.47188 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47596 * 299.99981 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4 20 20 H 1.08992 * 109.47233 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47096 * 300.00524 * 1 2 3 22 22 H 1.08997 * 109.46594 * 59.99821 * 1 2 3 23 23 H 1.09001 * 109.47572 * 59.99894 * 3 2 1 24 24 H 1.09002 * 109.47268 * 300.00176 * 3 2 1 25 25 H 1.09001 * 109.46812 * 59.99445 * 4 3 2 26 26 H 1.08997 * 109.46710 * 300.00004 * 4 3 2 27 27 H 1.08997 * 109.47422 * 59.99616 * 5 4 3 28 28 H 1.08999 * 109.46632 * 299.99620 * 5 4 3 29 29 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 30 30 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 31 31 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 32 32 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 33 33 H 0.96695 * 113.99929 * 298.55053 * 10 9 8 34 34 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 35 35 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 36 36 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 4.1579 2.5823 0.0013 6 7 5.6223 2.4662 0.0013 7 6 6.1247 2.0545 -1.3366 8 6 7.6049 2.4930 -1.3458 9 6 7.6950 3.6301 -0.3073 10 8 8.1227 4.8414 -0.9334 11 6 8.6428 3.2523 0.8017 12 1 8.2830 3.1766 1.8172 13 6 9.9694 3.0035 0.5199 14 7 10.4076 3.0964 -0.7166 15 14 11.1444 2.5359 1.8947 16 1 10.6747 1.2853 2.5433 17 1 12.5026 2.3220 1.3337 18 1 11.1899 3.6280 2.9000 19 6 6.2609 3.7857 0.2427 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.6887 1.8464 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8575 0.6434 -0.8891 26 1 3.8567 0.6438 0.8909 27 1 3.8358 3.1230 0.8912 28 1 3.8367 3.1233 -0.8887 29 1 5.5717 2.5666 -2.1240 30 1 6.0476 0.9740 -1.4576 31 1 7.8852 2.8592 -2.3335 32 1 8.2476 1.6624 -1.0543 33 1 9.0003 4.7876 -1.3358 34 1 11.3408 2.9210 -0.9148 35 1 6.2849 4.0068 1.3098 36 1 5.7296 4.5696 -0.2970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:56 Heat of formation + Delta-G solvation = -120.122485 kcal Electronic energy + Delta-G solvation = -16439.584055 eV Core-core repulsion = 13729.661374 eV Total energy + Delta-G solvation = -2709.922682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15808 -38.85542 -36.91199 -34.15230 -33.88767 -30.69067 -29.71035 -27.72948 -26.55691 -24.97732 -22.86308 -21.60216 -21.18629 -19.02545 -17.52773 -17.18273 -16.86696 -16.72283 -16.14295 -15.93019 -15.53340 -15.31835 -14.48775 -14.17085 -13.98518 -13.59630 -13.31853 -13.05510 -12.81176 -12.57625 -12.56675 -12.32050 -12.28165 -12.01551 -11.97011 -11.83823 -11.63234 -10.93165 -10.59516 -10.58160 -10.12124 -9.34835 -8.17690 -6.30498 1.43536 1.44054 1.51940 2.42285 2.66696 3.06330 3.28631 3.91255 4.00026 4.12607 4.19909 4.33841 4.36666 4.46378 4.48514 4.54057 4.57495 4.58529 4.68310 4.71686 4.85279 4.87346 5.04061 5.15519 5.23520 5.30264 5.38600 5.66732 5.78929 5.98009 6.17668 6.23925 6.31822 6.74003 7.37340 7.45283 8.88086 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.005424 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.290897 B = 5161.352032 C = 5435.366550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.067 3.933 4 C -0.104 4.104 5 C 0.050 3.950 6 N -0.512 5.512 7 C 0.041 3.959 8 C -0.114 4.114 9 C 0.230 3.770 10 O -0.602 6.602 11 C -0.544 4.544 12 H 0.052 0.948 13 C 0.026 3.974 14 N -0.916 5.916 15 Si 0.958 3.042 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.274 1.274 19 C 0.062 3.938 20 H 0.095 0.905 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.377 0.623 34 H 0.268 0.732 35 H 0.071 0.929 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 -3.223 -0.262 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.010 4.010 4 C -0.142 4.142 5 C -0.079 4.079 6 N -0.237 5.237 7 C -0.086 4.086 8 C -0.153 4.153 9 C 0.190 3.810 10 O -0.410 6.410 11 C -0.582 4.582 12 H 0.070 0.930 13 C -0.174 4.174 14 N -0.556 5.556 15 Si 0.784 3.216 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.066 4.066 20 H 0.114 0.886 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.226 0.774 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.345 -3.585 0.256 15.761 hybrid contribution 1.117 0.373 -0.270 1.208 sum -14.228 -3.212 -0.014 14.586 Atomic orbital electron populations 1.22928 0.79423 1.03786 1.00925 1.87839 1.21605 1.28894 1.95630 1.22468 0.92925 0.84373 1.01193 1.21312 0.93289 0.96628 1.03019 1.22182 0.87200 0.96895 1.01577 1.65241 1.06280 1.24455 1.27754 1.23115 0.95192 1.00598 0.89714 1.22642 0.94564 0.99929 0.98133 1.19541 0.90629 0.81267 0.89555 1.86071 1.39234 1.39045 1.76691 1.21846 0.94658 1.47036 0.94664 0.93023 1.25673 0.99558 0.94324 0.97849 1.69771 1.16431 1.50150 1.19250 0.85618 0.77807 0.78677 0.79524 1.20011 1.20607 1.19943 1.22803 0.94009 0.89697 1.00099 0.88621 0.93071 0.93115 0.92037 0.92257 0.92008 0.91600 0.89956 0.93916 0.93714 0.90159 0.93984 0.93499 0.77381 0.92315 0.91067 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.03 10.70 -148.98 -1.59 -11.62 16 3 C 0.07 1.45 5.94 71.98 0.43 1.88 16 4 C -0.10 -2.78 5.70 30.60 0.17 -2.61 16 5 C 0.05 1.45 4.83 86.30 0.42 1.87 16 6 N -0.51 -19.82 5.34 -881.04 -4.70 -24.52 16 7 C 0.04 1.61 5.93 86.42 0.51 2.12 16 8 C -0.11 -5.45 5.55 31.49 0.17 -5.27 16 9 C 0.23 11.75 1.05 -10.65 -0.01 11.73 16 10 O -0.60 -32.19 12.94 -148.98 -1.93 -34.12 16 11 C -0.54 -30.20 8.10 25.60 0.21 -29.99 16 12 H 0.05 2.89 7.53 -2.91 -0.02 2.87 16 13 C 0.03 1.39 5.02 84.66 0.43 1.81 16 14 N -0.92 -50.20 10.81 21.45 0.23 -49.96 16 15 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 C 0.06 2.71 5.74 86.45 0.50 3.20 16 20 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.73 7.47 -2.39 -0.02 1.71 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 28 H 0.04 1.17 7.77 -2.39 -0.02 1.15 16 29 H 0.04 1.59 7.75 -2.38 -0.02 1.57 16 30 H 0.08 2.90 7.86 -2.39 -0.02 2.88 16 31 H 0.04 2.02 7.98 -2.39 -0.02 2.00 16 32 H 0.05 2.47 7.23 -2.39 -0.02 2.45 16 33 H 0.38 20.52 7.32 -74.06 -0.54 19.97 16 34 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.07 3.15 7.67 -2.39 -0.02 3.13 16 36 H 0.04 1.53 7.94 -2.39 -0.02 1.51 16 Total: -1.00 -60.44 291.29 -1.39 -61.83 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.50 Total: 26.48 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.07 Total: -13.60 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -4.47 Total: -74.49 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -3.52 Total: -45.75 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -60.44 -1.39 -61.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.289 kcal (2) G-P(sol) polarization free energy of solvation -60.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds