Wall clock time and date at job start Sun Mar 29 2020 21:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42908 * 109.46844 * 2 1 4 4 C 1.42900 * 113.99565 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46914 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.47284 * 64.99523 * 5 4 3 7 7 C 1.48528 * 111.00100 * 52.60837 * 6 5 4 8 8 C 1.54930 * 103.22901 * 159.72002 * 7 6 5 9 9 C 1.54589 * 102.92382 * 322.58577 * 8 7 6 10 10 O 1.42905 * 110.39545 * 263.00153 * 9 8 7 11 11 C 1.50695 * 110.31183 * 140.87298 * 9 8 7 12 12 H 1.08004 * 120.00253 * 239.12326 * 11 9 8 13 13 C 1.37874 * 120.00337 * 59.12494 * 11 9 8 14 14 N 1.31524 * 119.99481 * 4.96068 * 13 11 9 15 15 Si 1.86798 * 120.00473 * 184.96431 * 13 11 9 16 16 H 1.48501 * 109.47204 * 94.99688 * 15 13 11 17 17 H 1.48502 * 109.47096 * 214.99531 * 15 13 11 18 18 H 1.48499 * 109.46898 * 334.99748 * 15 13 11 19 19 C 1.47899 * 110.99746 * 170.00326 * 6 5 4 20 20 H 1.08997 * 109.47332 * 299.99892 * 1 2 3 21 21 H 1.09002 * 109.47779 * 60.00425 * 1 2 3 22 22 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47332 * 240.00107 * 2 1 3 24 24 H 1.08999 * 109.47544 * 120.00305 * 2 1 3 25 25 H 1.08995 * 109.47628 * 60.00093 * 4 3 2 26 26 H 1.09004 * 109.47016 * 299.99464 * 4 3 2 27 27 H 1.09001 * 109.46905 * 304.99702 * 5 4 3 28 28 H 1.08998 * 109.47448 * 185.00160 * 5 4 3 29 29 H 1.09000 * 110.66458 * 41.27990 * 7 6 5 30 30 H 1.09008 * 110.81054 * 278.22460 * 7 6 5 31 31 H 1.09002 * 110.72056 * 204.22604 * 8 7 6 32 32 H 1.08998 * 110.87811 * 81.01757 * 8 7 6 33 33 H 0.96700 * 113.99425 * 295.76272 * 10 9 8 34 34 H 0.96995 * 119.99755 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.91825 * 94.80555 * 19 6 5 36 36 H 1.09000 * 109.92139 * 333.51038 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4307 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 7 3.3864 3.5618 1.2559 7 6 3.8731 2.7934 2.4301 8 6 3.7942 3.8230 3.5851 9 6 4.2162 5.1433 2.9007 10 8 5.6032 5.4011 3.1284 11 6 3.3812 6.2883 3.4132 12 1 2.7836 6.8703 2.7272 13 6 3.3802 6.5931 4.7578 14 7 4.1810 5.9490 5.5786 15 14 2.2414 7.9205 5.4139 16 1 0.9913 7.2963 5.9166 17 1 2.9131 8.6454 6.5224 18 1 1.9147 8.8752 4.3244 19 6 3.9536 4.9201 1.3997 20 1 -0.3634 0.5138 0.8900 21 1 -0.3635 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8332 0.9768 -0.8907 26 1 3.8339 0.9765 0.8892 27 1 3.3490 3.4419 -0.8412 28 1 4.9080 3.0256 -0.0899 29 1 4.9013 2.4658 2.2762 30 1 3.2249 1.9402 2.6303 31 1 4.4901 3.5622 4.3824 32 1 2.7775 3.8965 3.9712 33 1 5.8283 5.5496 4.0571 34 1 4.1800 6.1631 6.5246 35 1 3.2423 5.6603 1.0332 36 1 4.8886 4.9930 0.8443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:21 Heat of formation + Delta-G solvation = -95.606197 kcal Electronic energy + Delta-G solvation = -16769.977422 eV Core-core repulsion = 14061.117847 eV Total energy + Delta-G solvation = -2708.859576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.68543 -37.47522 -34.80666 -32.06003 -31.76743 -30.09281 -28.16476 -27.05639 -24.21390 -22.70748 -22.34251 -19.89257 -19.33143 -17.02872 -16.57330 -16.12300 -15.08989 -14.84178 -14.54642 -14.16301 -13.87558 -13.44845 -12.91656 -12.69841 -12.25325 -12.03583 -11.74525 -11.57179 -11.32010 -11.18294 -11.02774 -10.83126 -10.58573 -10.49152 -10.38377 -10.19806 -9.85118 -9.41580 -9.07998 -8.51331 -8.04958 -7.64689 -6.14642 -4.19971 3.28135 3.35107 3.39635 3.84344 4.37437 4.64927 5.06183 5.11627 5.15882 5.33628 5.38136 5.42572 5.52689 5.63899 5.78155 5.91678 5.94017 6.00584 6.13059 6.15019 6.26426 6.32848 6.47939 6.58265 7.00817 7.13406 7.37589 7.39205 7.59459 7.75698 7.81826 7.91799 8.23466 8.82199 9.45565 9.56731 10.93130 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.006585 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.121879 B = 4251.179952 C = 4633.348964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.066 3.934 5 C 0.047 3.953 6 N -0.504 5.504 7 C 0.032 3.968 8 C -0.116 4.116 9 C 0.242 3.758 10 O -0.596 6.596 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.053 3.947 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.382 0.618 34 H 0.265 0.735 35 H 0.079 0.921 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -10.110 -7.898 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.288 6.288 4 C -0.011 4.011 5 C -0.082 4.082 6 N -0.228 5.228 7 C -0.096 4.096 8 C -0.154 4.154 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.074 4.074 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.232 0.768 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.792 -10.012 -8.395 13.361 hybrid contribution 0.443 0.390 1.054 1.208 sum -2.349 -9.622 -7.341 12.328 Atomic orbital electron populations 1.21711 0.93959 1.01680 1.03338 1.22405 0.95616 0.84759 0.99376 1.88053 1.20630 1.24967 1.95179 1.22587 0.81907 0.97108 0.99510 1.22307 0.97492 0.93173 0.95191 1.64836 1.55007 1.02572 1.00435 1.23280 0.96370 0.97450 0.92480 1.22927 1.01949 0.95183 0.95386 1.19382 0.79872 0.91962 0.88575 1.86092 1.27372 1.94052 1.33020 1.21707 1.26563 1.15192 0.93046 0.91988 1.25015 0.95296 0.96258 0.96818 1.69692 1.37786 1.42114 1.04354 0.86457 0.80712 0.81574 0.78532 1.20583 1.21225 1.19760 1.22892 0.96791 0.89636 0.98101 0.91570 0.92021 0.91608 0.94142 0.93813 0.93725 0.93216 0.90355 0.93736 0.95252 0.91810 0.91798 0.91406 0.76761 0.92465 0.90313 0.94772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.15 0.38 -1.22 16 2 C 0.06 0.67 6.66 37.15 0.25 0.92 16 3 O -0.37 -5.86 10.29 -35.23 -0.36 -6.23 16 4 C 0.07 0.96 5.76 37.16 0.21 1.17 16 5 C 0.05 0.79 5.41 -3.82 -0.02 0.77 16 6 N -0.50 -10.40 5.34 -230.45 -1.23 -11.63 16 7 C 0.03 0.65 5.08 -1.90 -0.01 0.64 16 8 C -0.12 -2.79 5.31 -24.88 -0.13 -2.93 16 9 C 0.24 6.22 0.99 -90.42 -0.09 6.13 16 10 O -0.60 -15.88 12.94 -35.23 -0.46 -16.33 16 11 C -0.53 -14.58 8.12 -34.44 -0.28 -14.86 16 12 H 0.06 1.72 7.36 -52.48 -0.39 1.33 16 13 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 14 N -0.90 -24.50 10.89 55.43 0.60 -23.90 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.05 1.22 6.17 -2.75 -0.02 1.20 16 20 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.72 6.52 -51.93 -0.34 0.38 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.71 7.81 -51.93 -0.41 0.31 16 29 H 0.03 0.58 8.01 -51.93 -0.42 0.17 16 30 H 0.06 1.23 7.56 -51.92 -0.39 0.83 16 31 H 0.06 1.58 7.99 -51.93 -0.41 1.17 16 32 H 0.07 1.75 7.85 -51.93 -0.41 1.34 16 33 H 0.38 10.28 7.29 45.56 0.33 10.62 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.08 1.82 7.39 -51.93 -0.38 1.44 16 36 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -28.97 289.81 -7.19 -36.16 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.29 Total: 7.82 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.20 Total: -6.44 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.63 Total: -35.53 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.82 Total: -22.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.97 -7.19 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.445 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds