Wall clock time and date at job start Sun Mar 29 2020 21:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42908 * 109.46844 * 2 1 4 4 C 1.42900 * 113.99565 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46914 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.47284 * 64.99523 * 5 4 3 7 7 C 1.48528 * 111.00100 * 52.60837 * 6 5 4 8 8 C 1.54930 * 103.22901 * 159.72002 * 7 6 5 9 9 C 1.54589 * 102.92382 * 322.58577 * 8 7 6 10 10 O 1.42905 * 110.39545 * 263.00153 * 9 8 7 11 11 C 1.50695 * 110.31183 * 140.87298 * 9 8 7 12 12 H 1.08004 * 120.00253 * 239.12326 * 11 9 8 13 13 C 1.37874 * 120.00337 * 59.12494 * 11 9 8 14 14 N 1.31524 * 119.99481 * 4.96068 * 13 11 9 15 15 Si 1.86798 * 120.00473 * 184.96431 * 13 11 9 16 16 H 1.48501 * 109.47204 * 94.99688 * 15 13 11 17 17 H 1.48502 * 109.47096 * 214.99531 * 15 13 11 18 18 H 1.48499 * 109.46898 * 334.99748 * 15 13 11 19 19 C 1.47899 * 110.99746 * 170.00326 * 6 5 4 20 20 H 1.08997 * 109.47332 * 299.99892 * 1 2 3 21 21 H 1.09002 * 109.47779 * 60.00425 * 1 2 3 22 22 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47332 * 240.00107 * 2 1 3 24 24 H 1.08999 * 109.47544 * 120.00305 * 2 1 3 25 25 H 1.08995 * 109.47628 * 60.00093 * 4 3 2 26 26 H 1.09004 * 109.47016 * 299.99464 * 4 3 2 27 27 H 1.09001 * 109.46905 * 304.99702 * 5 4 3 28 28 H 1.08998 * 109.47448 * 185.00160 * 5 4 3 29 29 H 1.09000 * 110.66458 * 41.27990 * 7 6 5 30 30 H 1.09008 * 110.81054 * 278.22460 * 7 6 5 31 31 H 1.09002 * 110.72056 * 204.22604 * 8 7 6 32 32 H 1.08998 * 110.87811 * 81.01757 * 8 7 6 33 33 H 0.96700 * 113.99425 * 295.76272 * 10 9 8 34 34 H 0.96995 * 119.99755 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.91825 * 94.80555 * 19 6 5 36 36 H 1.09000 * 109.92139 * 333.51038 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4307 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 7 3.3864 3.5618 1.2559 7 6 3.8731 2.7934 2.4301 8 6 3.7942 3.8230 3.5851 9 6 4.2162 5.1433 2.9007 10 8 5.6032 5.4011 3.1284 11 6 3.3812 6.2883 3.4132 12 1 2.7836 6.8703 2.7272 13 6 3.3802 6.5931 4.7578 14 7 4.1810 5.9490 5.5786 15 14 2.2414 7.9205 5.4139 16 1 0.9913 7.2963 5.9166 17 1 2.9131 8.6454 6.5224 18 1 1.9147 8.8752 4.3244 19 6 3.9536 4.9201 1.3997 20 1 -0.3634 0.5138 0.8900 21 1 -0.3635 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8332 0.9768 -0.8907 26 1 3.8339 0.9765 0.8892 27 1 3.3490 3.4419 -0.8412 28 1 4.9080 3.0256 -0.0899 29 1 4.9013 2.4658 2.2762 30 1 3.2249 1.9402 2.6303 31 1 4.4901 3.5622 4.3824 32 1 2.7775 3.8965 3.9712 33 1 5.8283 5.5496 4.0571 34 1 4.1800 6.1631 6.5246 35 1 3.2423 5.6603 1.0332 36 1 4.8886 4.9930 0.8443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:21 Heat of formation + Delta-G solvation = -117.761250 kcal Electronic energy + Delta-G solvation = -16770.938137 eV Core-core repulsion = 14061.117847 eV Total energy + Delta-G solvation = -2709.820291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29733 -38.76752 -36.60600 -34.16710 -33.02392 -31.44986 -29.94859 -28.69474 -26.12575 -23.83706 -23.58195 -21.47039 -21.26965 -19.09767 -17.70970 -17.31639 -16.87548 -16.58284 -16.20779 -15.75537 -15.36847 -14.87640 -14.41876 -14.03076 -13.90782 -13.48454 -13.35451 -13.17510 -12.94972 -12.70108 -12.50552 -12.36075 -12.24816 -12.13491 -11.99634 -11.84990 -11.68615 -11.05849 -10.58237 -10.45221 -10.09489 -9.25930 -8.21593 -6.34825 1.40498 1.42437 1.52638 2.39970 2.81683 2.99518 3.17169 3.86482 4.01086 4.18786 4.25421 4.28898 4.33578 4.38287 4.46449 4.50415 4.54904 4.60861 4.66858 4.83944 4.92018 4.94150 5.08511 5.11403 5.24513 5.31253 5.43292 5.59968 5.76895 6.00323 6.16272 6.22839 6.45341 6.69621 7.34074 7.44257 8.84662 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.006585 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.121879 B = 4251.179952 C = 4633.348964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.401 6.401 4 C 0.069 3.931 5 C 0.044 3.956 6 N -0.514 5.514 7 C 0.046 3.954 8 C -0.109 4.109 9 C 0.226 3.774 10 O -0.601 6.601 11 C -0.556 4.556 12 H 0.051 0.949 13 C 0.028 3.972 14 N -0.913 5.913 15 Si 0.959 3.041 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.273 1.273 19 C 0.061 3.939 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.377 0.623 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -11.157 -8.639 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.321 6.321 4 C -0.008 4.008 5 C -0.084 4.084 6 N -0.239 5.239 7 C -0.081 4.081 8 C -0.148 4.148 9 C 0.187 3.813 10 O -0.410 6.410 11 C -0.594 4.594 12 H 0.070 0.930 13 C -0.172 4.172 14 N -0.553 5.553 15 Si 0.785 3.215 16 H -0.202 1.202 17 H -0.204 1.204 18 H -0.197 1.197 19 C -0.067 4.067 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.110 0.890 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.226 0.774 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.120 -11.076 -9.148 14.700 hybrid contribution 0.546 0.690 1.267 1.542 sum -2.574 -10.385 -7.882 13.289 Atomic orbital electron populations 1.21741 0.93325 1.03138 1.02353 1.22635 0.96214 0.83341 1.00600 1.88011 1.21233 1.27359 1.95449 1.22577 0.81740 0.95406 1.01061 1.22436 0.98230 0.94668 0.93116 1.64796 1.55366 1.01669 1.02106 1.23141 0.97413 0.96644 0.90924 1.22714 0.99866 0.95943 0.96253 1.19622 0.79065 0.92107 0.90548 1.86081 1.28143 1.94163 1.32607 1.21947 1.27506 1.16323 0.93621 0.93039 1.25692 0.96453 0.98148 0.96885 1.69764 1.38221 1.42755 1.04577 0.85529 0.78946 0.79136 0.77908 1.20197 1.20394 1.19730 1.22713 0.96743 0.91120 0.96128 0.93268 0.92258 0.88957 0.92009 0.93365 0.90550 0.93181 0.89918 0.92682 0.94153 0.90259 0.93112 0.93821 0.77352 0.92159 0.91255 0.94423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 10.28 71.98 0.74 -2.15 16 2 C 0.05 1.05 6.66 71.98 0.48 1.52 16 3 O -0.40 -11.87 10.29 -148.98 -1.53 -13.40 16 4 C 0.07 1.81 5.76 71.98 0.41 2.22 16 5 C 0.04 1.36 5.41 86.30 0.47 1.83 16 6 N -0.51 -20.70 5.34 -883.01 -4.72 -25.42 16 7 C 0.05 1.85 5.08 86.65 0.44 2.29 16 8 C -0.11 -5.31 5.31 31.80 0.17 -5.14 16 9 C 0.23 11.75 0.99 -10.66 -0.01 11.74 16 10 O -0.60 -32.35 12.94 -148.98 -1.93 -34.28 16 11 C -0.56 -31.24 8.12 25.60 0.21 -31.03 16 12 H 0.05 2.92 7.36 -2.91 -0.02 2.90 16 13 C 0.03 1.55 5.22 84.65 0.44 1.99 16 14 N -0.91 -50.06 10.89 21.45 0.23 -49.82 16 15 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 C 0.06 2.78 6.17 86.45 0.53 3.31 16 20 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.30 6.52 -2.39 -0.02 1.29 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.06 1.63 7.81 -2.39 -0.02 1.61 16 29 H 0.04 1.53 8.01 -2.39 -0.02 1.51 16 30 H 0.08 2.92 7.56 -2.38 -0.02 2.90 16 31 H 0.05 2.55 7.99 -2.39 -0.02 2.53 16 32 H 0.04 2.29 7.85 -2.39 -0.02 2.27 16 33 H 0.38 20.66 7.29 -74.06 -0.54 20.12 16 34 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 35 H 0.07 3.25 7.39 -2.39 -0.02 3.23 16 36 H 0.04 1.66 7.39 -2.39 -0.02 1.64 16 Total: -1.00 -61.23 289.81 -1.53 -62.76 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.51 Total: 28.02 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 3.88 Total: -13.42 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -4.49 Total: -75.24 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -3.46 Total: -47.68 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -61.23 -1.53 -62.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.005 kcal (2) G-P(sol) polarization free energy of solvation -61.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds