Wall clock time and date at job start Sun Mar 29 2020 21:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00115 * 2 1 4 4 H 1.09001 * 110.56140 * 27.32430 * 3 2 1 5 5 C 1.54792 * 110.61458 * 264.52026 * 3 2 1 6 6 O 1.44431 * 104.80336 * 265.47775 * 5 3 2 7 7 C 1.44431 * 105.26800 * 319.40722 * 6 5 3 8 8 C 1.54479 * 104.80435 * 40.51657 * 7 6 5 9 9 H 1.09005 * 110.50774 * 94.79634 * 8 7 6 10 10 N 1.46890 * 110.51085 * 217.36996 * 8 7 6 11 11 C 1.46901 * 111.00688 * 271.69510 * 10 8 7 12 12 C 1.52992 * 109.47859 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 H 1.08995 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46907 * 299.99655 * 1 2 3 24 24 H 1.09001 * 109.47559 * 59.99601 * 1 2 3 25 25 H 1.08998 * 110.43773 * 146.61154 * 5 3 2 26 26 H 1.08999 * 110.30658 * 24.26839 * 5 3 2 27 27 H 1.08997 * 110.37633 * 281.68182 * 7 6 5 28 28 H 1.09009 * 110.46123 * 159.39217 * 7 6 5 29 29 H 1.00905 * 111.00280 * 35.65496 * 10 8 7 30 30 H 1.09002 * 109.46980 * 59.99769 * 11 10 8 31 31 H 1.09001 * 109.46628 * 300.00190 * 11 10 8 32 32 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 33 33 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 34 34 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 35 35 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3376 2.0240 0.4685 5 6 2.3583 1.7471 -1.4422 6 8 3.7457 1.3844 -1.6145 7 6 4.3848 1.7205 -0.3637 8 6 3.3753 1.2903 0.7236 9 1 3.6058 0.2875 1.0833 10 7 3.3785 2.2485 1.8369 11 6 4.3889 1.8868 2.8401 12 6 4.3617 2.9051 3.9816 13 6 5.4136 2.5280 5.0267 14 6 5.3872 3.5314 6.1508 15 1 4.6897 4.3554 6.1228 16 6 6.2530 3.3968 7.2154 17 7 7.1020 2.3931 7.2497 18 14 6.2198 4.6401 8.6091 19 1 4.8747 4.6424 9.2386 20 1 7.2408 4.2742 9.6233 21 1 6.5177 5.9927 8.0731 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 2.2312 2.8241 -1.5516 26 1 1.7351 1.2156 -2.1614 27 1 4.5686 2.7935 -0.3077 28 1 5.3192 1.1700 -0.2532 29 1 3.5210 3.1901 1.5033 30 1 5.3759 1.8853 2.3775 31 1 4.1707 0.8942 3.2339 32 1 3.3747 2.9062 4.4441 33 1 4.5796 3.8979 3.5881 34 1 6.4008 2.5266 4.5645 35 1 5.1952 1.5352 5.4201 36 1 7.7114 2.2986 7.9985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:42 Heat of formation + Delta-G solvation = -100.539181 kcal Electronic energy + Delta-G solvation = -15954.528197 eV Core-core repulsion = 13245.454711 eV Total energy + Delta-G solvation = -2709.073486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01063 -37.15042 -36.08663 -33.54125 -31.59498 -29.65493 -28.22059 -26.69855 -25.63291 -23.05295 -22.29612 -21.08047 -20.04062 -17.23200 -16.73077 -16.31111 -16.00680 -15.55197 -14.91963 -14.73663 -14.43267 -14.28736 -13.65473 -13.43563 -12.53424 -12.38998 -12.15095 -11.96856 -11.71909 -11.55302 -11.39697 -10.96178 -10.83752 -10.60823 -10.54975 -10.23475 -9.76195 -9.61356 -9.34263 -9.07158 -8.34265 -8.28459 -5.99292 -4.01668 3.33885 3.38169 3.40124 3.42577 3.75863 4.38703 4.45379 4.52645 4.70146 4.90873 4.99281 5.08486 5.17108 5.23645 5.36463 5.39483 5.49254 5.52359 5.60224 5.68872 5.80732 5.86474 6.26471 6.47044 6.66529 6.70323 7.04408 7.10225 7.22363 7.48041 7.67759 7.82415 8.00633 8.43483 9.05216 9.62317 11.12125 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.004186 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.566525 B = 6688.115141 C = 6936.408993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.061 3.939 4 H 0.090 0.910 5 C 0.024 3.976 6 O -0.369 6.369 7 C 0.018 3.982 8 C 0.056 3.944 9 H 0.104 0.896 10 N -0.679 5.679 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.085 0.915 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.340 0.660 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 -1.732 -16.000 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.002 3.998 4 H 0.108 0.892 5 C -0.054 4.054 6 O -0.287 6.287 7 C -0.060 4.060 8 C -0.056 4.056 9 H 0.122 0.878 10 N -0.310 5.310 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.104 0.896 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.158 0.842 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.852 -2.393 -15.741 19.268 hybrid contribution 0.583 1.209 0.536 1.445 sum -10.268 -1.185 -15.204 18.385 Atomic orbital electron populations 1.22820 0.81033 1.02794 1.00015 1.87947 1.19658 1.26896 1.94758 1.23577 0.95811 0.85759 0.94618 0.89226 1.24007 0.84248 0.99715 0.97424 1.89146 1.20452 1.84857 1.34234 1.24251 0.97645 1.00219 0.83915 1.22985 0.92466 0.99096 0.91028 0.87788 1.60529 1.52957 1.04927 1.12628 1.22209 0.91342 1.00877 0.92494 1.21634 1.01350 0.96391 0.95151 1.19063 0.93059 0.96936 0.92506 1.21209 1.19027 1.10808 1.04836 0.92733 1.25026 0.95485 0.95636 0.98321 1.69955 1.21839 1.30227 1.31539 0.86652 0.77727 0.81671 0.81905 1.20223 1.21298 1.20275 0.89612 0.93582 0.94275 0.91484 0.88736 0.91944 0.88564 0.84170 0.95357 0.91126 0.92505 0.93589 0.96750 0.96519 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.36 16 2 O -0.37 -4.70 10.35 -35.23 -0.36 -5.07 16 3 C 0.06 0.71 3.41 -24.99 -0.09 0.63 16 4 H 0.09 0.97 7.65 -51.93 -0.40 0.58 16 5 C 0.02 0.25 7.39 38.10 0.28 0.53 16 6 O -0.37 -4.88 11.65 -35.23 -0.41 -5.29 16 7 C 0.02 0.22 7.29 37.93 0.28 0.50 16 8 C 0.06 0.72 3.23 -66.15 -0.21 0.50 16 9 H 0.10 1.49 7.71 -51.93 -0.40 1.09 16 10 N -0.68 -9.51 6.24 -105.08 -0.66 -10.16 16 11 C 0.06 0.99 5.54 -3.83 -0.02 0.97 16 12 C -0.11 -2.18 5.41 -26.74 -0.14 -2.33 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.40 8.11 -51.92 -0.42 -0.02 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 27 H 0.06 0.69 7.58 -51.93 -0.39 0.29 16 28 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 29 H 0.34 4.30 8.13 -39.29 -0.32 3.98 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -31.26 299.72 -6.68 -37.93 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.12 Total: -1.27 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 0.64 Total: -11.00 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.08 Total: -36.52 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.78 Total: -10.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.26 -6.68 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.607 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds