Wall clock time and date at job start Sun Mar 29 2020 21:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00115 * 2 1 4 4 H 1.09001 * 110.56140 * 27.32430 * 3 2 1 5 5 C 1.54792 * 110.61458 * 264.52026 * 3 2 1 6 6 O 1.44431 * 104.80336 * 265.47775 * 5 3 2 7 7 C 1.44431 * 105.26800 * 319.40722 * 6 5 3 8 8 C 1.54479 * 104.80435 * 40.51657 * 7 6 5 9 9 H 1.09005 * 110.50774 * 94.79634 * 8 7 6 10 10 N 1.46890 * 110.51085 * 217.36996 * 8 7 6 11 11 C 1.46901 * 111.00688 * 271.69510 * 10 8 7 12 12 C 1.52992 * 109.47859 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 H 1.08995 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46907 * 299.99655 * 1 2 3 24 24 H 1.09001 * 109.47559 * 59.99601 * 1 2 3 25 25 H 1.08998 * 110.43773 * 146.61154 * 5 3 2 26 26 H 1.08999 * 110.30658 * 24.26839 * 5 3 2 27 27 H 1.08997 * 110.37633 * 281.68182 * 7 6 5 28 28 H 1.09009 * 110.46123 * 159.39217 * 7 6 5 29 29 H 1.00905 * 111.00280 * 35.65496 * 10 8 7 30 30 H 1.09002 * 109.46980 * 59.99769 * 11 10 8 31 31 H 1.09001 * 109.46628 * 300.00190 * 11 10 8 32 32 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 33 33 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 34 34 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 35 35 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3376 2.0240 0.4685 5 6 2.3583 1.7471 -1.4422 6 8 3.7457 1.3844 -1.6145 7 6 4.3848 1.7205 -0.3637 8 6 3.3753 1.2903 0.7236 9 1 3.6058 0.2875 1.0833 10 7 3.3785 2.2485 1.8369 11 6 4.3889 1.8868 2.8401 12 6 4.3617 2.9051 3.9816 13 6 5.4136 2.5280 5.0267 14 6 5.3872 3.5314 6.1508 15 1 4.6897 4.3554 6.1228 16 6 6.2530 3.3968 7.2154 17 7 7.1020 2.3931 7.2497 18 14 6.2198 4.6401 8.6091 19 1 4.8747 4.6424 9.2386 20 1 7.2408 4.2742 9.6233 21 1 6.5177 5.9927 8.0731 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 2.2312 2.8241 -1.5516 26 1 1.7351 1.2156 -2.1614 27 1 4.5686 2.7935 -0.3077 28 1 5.3192 1.1700 -0.2532 29 1 3.5210 3.1901 1.5033 30 1 5.3759 1.8853 2.3775 31 1 4.1707 0.8942 3.2339 32 1 3.3747 2.9062 4.4441 33 1 4.5796 3.8979 3.5881 34 1 6.4008 2.5266 4.5645 35 1 5.1952 1.5352 5.4201 36 1 7.7114 2.2986 7.9985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:42 Heat of formation + Delta-G solvation = -123.668180 kcal Electronic energy + Delta-G solvation = -15955.531145 eV Core-core repulsion = 13245.454711 eV Total energy + Delta-G solvation = -2710.076434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94988 -38.05055 -37.41574 -35.42833 -33.33514 -30.78866 -29.41226 -27.63466 -27.15987 -24.47422 -23.56301 -22.28587 -21.56480 -18.54964 -18.02698 -17.68483 -17.03522 -16.60273 -16.48157 -15.93707 -15.70684 -15.46895 -14.84944 -14.51187 -14.30097 -13.81485 -13.50310 -13.16612 -13.00670 -12.74272 -12.61548 -12.49398 -12.46018 -12.26451 -11.85338 -11.55360 -11.38948 -11.18189 -11.06061 -10.54130 -10.48377 -9.43616 -8.19291 -6.30459 1.41046 1.44138 1.52075 2.41113 2.52655 2.87419 3.14046 3.42513 3.53496 3.74696 3.99343 4.03659 4.23975 4.30692 4.41042 4.46233 4.54524 4.61934 4.65932 4.70269 4.71179 4.79582 4.87031 4.98902 5.08632 5.24502 5.51680 5.60494 5.75250 5.86346 5.91011 6.25639 6.27351 6.38777 6.86623 7.38931 8.92487 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.004186 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.566525 B = 6688.115141 C = 6936.408993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.064 3.936 4 H 0.099 0.901 5 C 0.024 3.976 6 O -0.390 6.390 7 C 0.021 3.979 8 C 0.054 3.946 9 H 0.085 0.915 10 N -0.674 5.674 11 C 0.072 3.928 12 C -0.092 4.092 13 C 0.024 3.976 14 C -0.544 4.544 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.266 1.266 22 H 0.095 0.905 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.351 0.649 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.056 0.944 34 H -0.008 1.008 35 H -0.010 1.010 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.840 -0.347 -16.556 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.005 3.995 4 H 0.117 0.883 5 C -0.052 4.052 6 O -0.308 6.308 7 C -0.057 4.057 8 C -0.057 4.057 9 H 0.103 0.897 10 N -0.306 5.306 11 C -0.056 4.056 12 C -0.130 4.130 13 C -0.014 4.014 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.190 1.190 22 H 0.114 0.886 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.171 0.829 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.011 0.989 35 H 0.008 0.992 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.023 -0.999 -16.319 20.294 hybrid contribution 0.910 0.728 0.677 1.348 sum -11.113 -0.271 -15.642 19.190 Atomic orbital electron populations 1.23009 0.79277 1.03883 1.01010 1.87910 1.21680 1.27524 1.94945 1.23563 0.95002 0.85796 0.95160 0.88317 1.24163 0.83058 1.01201 0.96822 1.89124 1.21862 1.85298 1.34541 1.24229 0.97204 1.01005 0.83292 1.22957 0.94121 0.97738 0.90857 0.89698 1.60416 1.51580 1.05852 1.12778 1.21886 0.92382 0.99113 0.92267 1.21370 0.99042 0.97745 0.94824 1.18979 0.93672 0.95240 0.93512 1.21679 1.19222 1.11449 1.05829 0.92091 1.25994 0.94950 0.97691 1.01257 1.70093 1.22650 1.32176 1.32561 0.85496 0.78098 0.79155 0.78269 1.19199 1.20909 1.19048 0.88615 0.93474 0.92331 0.89223 0.87752 0.90507 0.88770 0.82903 0.95114 0.92277 0.92823 0.92567 0.98931 0.99204 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.85 113.37 1.23 1.62 16 2 O -0.40 -9.61 10.35 -148.98 -1.54 -11.15 16 3 C 0.06 1.37 3.41 31.72 0.11 1.47 16 4 H 0.10 1.91 7.65 -2.39 -0.02 1.90 16 5 C 0.02 0.46 7.39 72.59 0.54 0.99 16 6 O -0.39 -9.69 11.65 -148.98 -1.74 -11.43 16 7 C 0.02 0.49 7.29 72.48 0.53 1.01 16 8 C 0.05 1.35 3.23 45.93 0.15 1.50 16 9 H 0.08 2.45 7.71 -2.38 -0.02 2.43 16 10 N -0.67 -17.96 6.24 -486.36 -3.03 -20.99 16 11 C 0.07 2.42 5.54 86.30 0.48 2.89 16 12 C -0.09 -3.71 5.41 30.59 0.17 -3.54 16 13 C 0.02 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 17 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 18 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 0.74 8.11 -2.38 -0.02 0.72 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 27 H 0.08 1.52 7.58 -2.39 -0.02 1.51 16 28 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.35 8.10 8.13 -89.69 -0.73 7.37 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -66.76 299.72 0.35 -66.41 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.31 Total: 11.00 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.04 Total: -23.12 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.75 Total: -78.02 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -3.28 Total: -22.58 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.76 0.35 -66.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.253 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds