Wall clock time and date at job start Sun Mar 29 2020 21:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47097 * 2 1 4 4 C 1.42902 * 113.99566 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46690 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46980 * 55.00185 * 5 4 3 7 7 O 1.42893 * 109.47363 * 295.00270 * 5 4 3 8 8 C 1.53000 * 109.47165 * 175.00141 * 5 4 3 9 9 N 1.46902 * 109.47267 * 185.00346 * 8 5 4 10 10 C 1.47961 * 111.00005 * 189.99860 * 9 8 5 11 11 C 1.53934 * 86.17939 * 137.58072 * 10 9 8 12 12 C 1.50703 * 113.73399 * 221.81705 * 11 10 9 13 13 H 1.07999 * 119.99920 * 358.09577 * 12 11 10 14 14 C 1.37877 * 119.99669 * 178.10223 * 12 11 10 15 15 N 1.31510 * 120.00506 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99624 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47293 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47387 * 119.99775 * 16 14 12 19 19 H 1.48498 * 109.47096 * 240.00236 * 16 14 12 20 20 C 1.48296 * 111.00409 * 289.35161 * 9 8 5 21 21 H 1.09001 * 109.47088 * 300.00141 * 1 2 3 22 22 H 1.09004 * 109.46776 * 60.00400 * 1 2 3 23 23 H 1.09004 * 109.47131 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47088 * 239.99859 * 2 1 3 25 25 H 1.09004 * 109.46826 * 120.00155 * 2 1 3 26 26 H 1.08997 * 109.46925 * 60.00622 * 4 3 2 27 27 H 1.08997 * 109.47212 * 299.99810 * 4 3 2 28 28 H 0.96700 * 114.00593 * 299.99690 * 7 5 4 29 29 H 1.08997 * 109.47182 * 65.00068 * 8 5 4 30 30 H 1.09007 * 109.47120 * 305.00232 * 8 5 4 31 31 H 1.09007 * 113.75652 * 23.26342 * 10 9 8 32 32 H 1.08993 * 113.76177 * 251.90248 * 10 9 8 33 33 H 1.09002 * 113.73279 * 90.64057 * 11 10 9 34 34 H 0.96995 * 120.00309 * 180.02562 * 15 14 12 35 35 H 1.09001 * 113.86054 * 108.14174 * 20 9 8 36 36 H 1.09000 * 113.76062 * 336.68481 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 -0.0001 6 1 3.3492 3.4418 0.8413 7 8 3.3986 3.5446 -1.2216 8 6 5.3453 3.0606 0.1262 9 7 5.7143 4.4775 0.2460 10 6 7.1786 4.6557 0.1305 11 6 6.8569 5.8736 -0.7542 12 6 7.7425 5.9926 -1.9677 13 1 8.5348 5.2769 -2.1303 14 6 7.5413 7.0153 -2.8703 15 7 6.5769 7.8872 -2.6720 16 14 8.6394 7.1632 -4.3742 17 1 9.6419 6.0677 -4.3648 18 1 7.8115 7.0666 -5.6032 19 1 9.3384 8.4732 -4.3498 20 6 5.5064 5.1912 -1.0372 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8340 0.9764 -0.8892 27 1 3.8333 0.9766 0.8908 28 1 3.7838 3.1463 -2.0141 29 1 5.8188 2.6354 -0.7587 30 1 5.6808 2.5216 1.0123 31 1 7.6788 3.8463 -0.4014 32 1 7.6653 4.9125 1.0713 33 1 6.7687 6.8078 -0.1994 34 1 6.4351 8.6064 -3.3072 35 1 4.6582 5.8757 -1.0286 36 1 5.5187 4.5383 -1.9099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:27 Heat of formation + Delta-G solvation = -95.506415 kcal Electronic energy + Delta-G solvation = -16248.376383 eV Core-core repulsion = 13539.521134 eV Total energy + Delta-G solvation = -2708.855249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74398 -39.21358 -37.45088 -34.69045 -32.86476 -31.84268 -29.42472 -26.96384 -26.62931 -24.11759 -23.68186 -22.34459 -20.40677 -18.70963 -17.85450 -17.59847 -17.05159 -16.65771 -16.45993 -16.04603 -15.64529 -15.33825 -14.51195 -14.04314 -13.90493 -13.76326 -13.38263 -13.21882 -13.05649 -12.86253 -12.49861 -12.36273 -12.24803 -12.22704 -11.78878 -11.64422 -11.14204 -10.88639 -10.76361 -10.57433 -10.41972 -9.55575 -8.12606 -6.24767 1.42320 1.43826 1.55466 2.42970 2.54631 3.17096 3.33777 3.51333 3.92297 4.05036 4.07313 4.16393 4.29482 4.38204 4.41429 4.48404 4.49030 4.56011 4.63383 4.79043 4.85429 4.90148 5.01484 5.03246 5.10141 5.25953 5.37780 5.54785 5.64845 5.87540 6.25107 6.31598 6.43139 6.81753 6.84838 7.43787 8.97090 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.044933 B = 0.005003 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.995550 B = 5595.830424 C = 5850.774458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.409 6.409 4 C 0.041 3.959 5 C 0.118 3.882 6 H 0.089 0.911 7 O -0.568 6.568 8 C -0.003 4.003 9 N -0.493 5.493 10 C 0.014 3.986 11 C 0.010 3.990 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.959 3.041 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.052 3.948 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.378 0.622 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.038 0.962 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 -17.064 4.084 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.329 6.329 4 C -0.036 4.036 5 C 0.058 3.942 6 H 0.107 0.893 7 O -0.374 6.374 8 C -0.133 4.133 9 N -0.216 5.216 10 C -0.115 4.115 11 C -0.009 4.009 12 C -0.569 4.569 13 H 0.079 0.921 14 C -0.186 4.186 15 N -0.561 5.561 16 Si 0.784 3.216 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.077 4.077 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.226 0.774 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.992 -16.194 5.027 18.342 hybrid contribution 1.199 -0.353 -1.798 2.189 sum -5.793 -16.547 3.230 17.827 Atomic orbital electron populations 1.21771 0.93168 1.03365 1.02454 1.22696 0.96292 0.82856 1.00989 1.87945 1.21257 1.28086 1.95589 1.23164 0.81705 0.96532 1.02224 1.21822 0.92728 0.91835 0.87783 0.89288 1.86672 1.72495 1.62212 1.16011 1.23195 0.95728 0.92009 1.02325 1.68466 1.10543 1.10403 1.32168 1.23947 0.89385 0.98724 0.99427 1.20411 0.93489 0.92870 0.94127 1.21460 1.16102 1.12168 1.07217 0.92131 1.25853 0.96516 0.95095 1.01185 1.70120 1.32509 1.16002 1.37506 0.85500 0.78877 0.78135 0.79090 1.18609 1.20658 1.20761 1.23565 0.98631 0.96047 0.89500 0.92473 0.92818 0.88789 0.92590 0.92132 0.91739 0.90491 0.77392 0.93475 0.88249 0.91532 0.90345 0.96322 0.92958 0.94350 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.87 6.66 71.98 0.48 1.34 16 3 O -0.41 -10.68 10.31 -144.33 -1.49 -12.17 16 4 C 0.04 0.93 5.57 71.98 0.40 1.33 16 5 C 0.12 3.51 3.45 30.59 0.11 3.61 16 6 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 7 O -0.57 -19.74 11.17 -144.33 -1.61 -21.36 16 8 C 0.00 -0.11 4.64 86.30 0.40 0.29 16 9 N -0.49 -19.84 6.27 -907.02 -5.69 -25.53 16 10 C 0.01 0.56 7.53 86.41 0.65 1.21 16 11 C 0.01 0.53 3.60 -10.89 -0.04 0.49 16 12 C -0.53 -29.21 8.77 25.60 0.22 -28.99 16 13 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 14 C 0.01 0.71 5.46 84.66 0.46 1.17 16 15 N -0.92 -55.20 13.29 21.45 0.28 -54.92 16 16 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.05 2.46 5.70 86.34 0.49 2.95 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.38 10.85 8.67 -74.06 -0.64 10.21 16 29 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16 30 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.07 2.56 7.74 -2.38 -0.02 2.54 16 32 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 2.44 7.02 -2.39 -0.02 2.43 16 Total: -1.00 -66.32 298.50 -2.16 -68.48 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.40 Total: 18.32 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.92 Total: -18.26 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -5.40 Total: -80.44 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -3.10 Total: -33.52 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.32 -2.16 -68.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.024 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds