Wall clock time and date at job start Sun Mar 29 2020 21:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00226 * 2 1 4 4 C 1.53002 * 109.46924 * 66.04623 * 3 2 1 5 5 C 1.50697 * 109.47153 * 180.02562 * 4 3 2 6 6 H 1.08005 * 120.00019 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00231 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99959 * 359.72868 * 7 5 4 9 9 Si 1.86799 * 120.00162 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47211 * 60.00239 * 9 7 5 11 11 H 1.48505 * 109.47080 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47177 * 299.99682 * 9 7 5 13 13 C 1.46896 * 111.00083 * 236.04901 * 2 1 3 14 14 C 1.52998 * 109.47180 * 199.80287 * 13 2 1 15 15 H 1.08994 * 109.52431 * 302.05660 * 14 13 2 16 16 C 1.53147 * 109.52450 * 181.86499 * 14 13 2 17 17 O 1.43073 * 109.15364 * 184.78618 * 16 14 13 18 18 C 1.43069 * 113.59222 * 57.94806 * 17 16 14 19 19 C 1.53147 * 109.15554 * 302.04917 * 18 17 16 20 20 O 1.43067 * 109.52622 * 62.19294 * 14 13 2 21 21 H 1.08995 * 109.47410 * 54.75485 * 1 2 3 22 22 H 1.09001 * 109.46964 * 174.76151 * 1 2 3 23 23 H 1.09005 * 109.47001 * 294.76221 * 1 2 3 24 24 H 1.09000 * 109.46818 * 306.05336 * 3 2 1 25 25 H 1.08993 * 109.47358 * 186.04599 * 3 2 1 26 26 H 1.08998 * 109.47470 * 60.00062 * 4 3 2 27 27 H 1.09009 * 109.47428 * 300.00164 * 4 3 2 28 28 H 0.97000 * 120.00132 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.46854 * 319.80269 * 13 2 1 30 30 H 1.08999 * 109.47526 * 79.79605 * 13 2 1 31 31 H 1.09005 * 109.52084 * 304.68482 * 16 14 13 32 32 H 1.08996 * 109.52465 * 64.87914 * 16 14 13 33 33 H 1.09000 * 109.52725 * 182.15026 * 18 17 16 34 34 H 1.09000 * 109.57888 * 61.98861 * 18 17 16 35 35 H 1.08994 * 109.52641 * 295.41595 * 19 18 17 36 36 H 1.08996 * 109.57995 * 175.24807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1711 3.4645 1.3181 6 1 2.7192 3.8326 0.4633 7 6 1.9650 4.2820 2.4090 8 7 1.2930 3.8356 3.4477 9 14 2.6344 6.0260 2.4090 10 1 2.0432 6.7831 1.2767 11 1 2.2810 6.6918 3.6885 12 1 4.1117 5.9891 2.2624 13 6 1.9954 -0.7659 -1.1376 14 6 3.4452 -1.1655 -0.8562 15 1 4.0412 -0.2710 -0.6756 16 6 4.0102 -1.9240 -2.0608 17 8 5.3258 -2.3905 -1.7469 18 6 5.3733 -3.2373 -0.5947 19 6 4.8085 -2.4789 0.6100 20 8 3.4928 -2.0124 0.2960 21 1 -0.3634 0.5930 -0.8392 22 1 -0.3633 -1.0234 -0.0938 23 1 -0.3633 0.4305 0.9332 24 1 1.5611 1.9273 -0.8308 25 1 3.0797 1.3444 -0.1082 26 1 2.0658 1.5015 2.1492 27 1 0.5472 2.0845 1.4266 28 1 1.1477 4.4109 4.2151 29 1 1.3928 -1.6627 -1.2819 30 1 1.9557 -0.1529 -2.0380 31 1 3.3674 -2.7739 -2.2902 32 1 4.0558 -1.2576 -2.9221 33 1 6.4062 -3.5220 -0.3941 34 1 4.7771 -4.1320 -0.7741 35 1 5.4511 -1.6290 0.8394 36 1 4.7630 -3.1444 1.4720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595743074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:01 Heat of formation + Delta-G solvation = -90.406087 kcal Electronic energy + Delta-G solvation = -16535.871538 eV Core-core repulsion = 13827.237456 eV Total energy + Delta-G solvation = -2708.634082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86815 -37.18342 -35.73052 -33.14140 -31.96940 -29.64298 -28.48758 -26.37711 -25.22930 -23.61841 -21.98230 -20.99475 -19.74746 -16.79490 -16.61764 -16.29121 -15.98588 -15.34221 -15.09326 -14.53787 -14.43062 -14.01439 -13.48288 -13.24517 -12.57648 -12.25012 -12.14747 -11.86747 -11.69166 -11.30407 -11.18097 -11.00159 -10.83962 -10.62112 -10.53128 -10.20422 -9.75257 -9.33773 -9.10782 -9.00355 -8.29806 -7.65744 -5.96320 -3.98827 3.35014 3.39322 3.41615 3.66474 3.81154 4.30404 4.49944 4.76417 4.95226 5.06178 5.11697 5.15752 5.32725 5.39277 5.46510 5.47170 5.63615 5.72731 5.81354 5.89643 5.98562 6.06058 6.29352 6.45427 6.54553 6.90624 7.01418 7.26187 7.55455 7.60660 7.82400 7.94398 8.13080 8.46949 9.08399 9.64438 11.15052 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.005766 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.343064 B = 4854.695997 C = 5191.917702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.534 5.534 3 C 0.061 3.939 4 C 0.029 3.971 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.063 3.937 14 C 0.061 3.939 15 H 0.072 0.928 16 C 0.031 3.969 17 O -0.381 6.381 18 C 0.024 3.976 19 C 0.022 3.978 20 O -0.353 6.353 21 H 0.018 0.982 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.019 0.981 25 H 0.058 0.942 26 H 0.025 0.975 27 H 0.017 0.983 28 H 0.261 0.739 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -13.081 -9.341 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.258 5.258 3 C -0.065 4.065 4 C -0.008 4.008 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.066 4.066 14 C 0.003 3.997 15 H 0.089 0.911 16 C -0.047 4.047 17 O -0.300 6.300 18 C -0.053 4.053 19 C -0.055 4.055 20 O -0.271 6.271 21 H 0.036 0.964 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.346 -13.253 -8.730 16.454 hybrid contribution 0.132 1.384 -0.622 1.523 sum 4.478 -11.869 -9.352 15.760 Atomic orbital electron populations 1.22350 0.87682 1.00124 1.01599 1.61984 1.07483 1.15784 1.40511 1.22423 0.98463 0.85166 1.00486 1.19069 0.96923 0.93895 0.90961 1.21165 1.35213 0.97861 1.01910 0.92943 1.24987 0.95301 0.98398 0.95572 1.69968 1.40576 1.36519 1.06164 0.86668 0.79435 0.84753 0.77181 1.20311 1.21261 1.20264 1.21988 0.93526 0.98187 0.92854 1.22789 0.97935 0.93216 0.85791 0.91059 1.23259 0.84551 0.98824 0.98053 1.88066 1.28219 1.67281 1.46449 1.23268 1.02480 0.93073 0.86511 1.23203 0.86018 0.98944 0.97363 1.88236 1.26277 1.66460 1.46176 0.96373 0.92643 0.90403 0.96280 0.92357 0.95680 0.96464 0.92962 0.90799 0.93568 0.92303 0.87984 0.88136 0.92416 0.92195 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.23 60.06 0.55 1.08 16 2 N -0.53 -10.14 4.60 -242.92 -1.12 -11.26 16 3 C 0.06 1.33 4.72 -3.82 -0.02 1.32 16 4 C 0.03 0.77 4.89 -27.88 -0.14 0.64 16 5 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 6 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 0.96 4.69 -3.83 -0.02 0.94 16 14 C 0.06 0.92 2.92 -26.66 -0.08 0.84 16 15 H 0.07 1.19 6.74 -51.93 -0.35 0.84 16 16 C 0.03 0.37 6.34 37.23 0.24 0.61 16 17 O -0.38 -5.04 10.85 -48.80 -0.53 -5.56 16 18 C 0.02 0.26 7.05 37.23 0.26 0.52 16 19 C 0.02 0.28 7.05 37.23 0.26 0.54 16 20 O -0.35 -5.73 10.40 -48.80 -0.51 -6.24 16 21 H 0.02 0.29 8.07 -51.93 -0.42 -0.13 16 22 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 23 H 0.08 1.49 6.73 -51.93 -0.35 1.14 16 24 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 25 H 0.06 1.26 6.61 -51.93 -0.34 0.92 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.48 6.67 -51.92 -0.35 0.13 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.07 1.01 7.75 -51.92 -0.40 0.60 16 30 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 290.97 15.07 4.38 4.38 Total: -1.00 -32.25 290.97 -7.35 -39.60 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.95 Total: -3.97 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 0.65 Total: -7.30 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.38 Total: -37.81 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.04 Total: -11.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.25 -7.35 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595743074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.802 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds