Wall clock time and date at job start Sun Mar 29 2020 21:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00226 * 2 1 4 4 C 1.53002 * 109.46924 * 66.04623 * 3 2 1 5 5 C 1.50697 * 109.47153 * 180.02562 * 4 3 2 6 6 H 1.08005 * 120.00019 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00231 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99959 * 359.72868 * 7 5 4 9 9 Si 1.86799 * 120.00162 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47211 * 60.00239 * 9 7 5 11 11 H 1.48505 * 109.47080 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47177 * 299.99682 * 9 7 5 13 13 C 1.46896 * 111.00083 * 236.04901 * 2 1 3 14 14 C 1.52998 * 109.47180 * 199.80287 * 13 2 1 15 15 H 1.08994 * 109.52431 * 302.05660 * 14 13 2 16 16 C 1.53147 * 109.52450 * 181.86499 * 14 13 2 17 17 O 1.43073 * 109.15364 * 184.78618 * 16 14 13 18 18 C 1.43069 * 113.59222 * 57.94806 * 17 16 14 19 19 C 1.53147 * 109.15554 * 302.04917 * 18 17 16 20 20 O 1.43067 * 109.52622 * 62.19294 * 14 13 2 21 21 H 1.08995 * 109.47410 * 54.75485 * 1 2 3 22 22 H 1.09001 * 109.46964 * 174.76151 * 1 2 3 23 23 H 1.09005 * 109.47001 * 294.76221 * 1 2 3 24 24 H 1.09000 * 109.46818 * 306.05336 * 3 2 1 25 25 H 1.08993 * 109.47358 * 186.04599 * 3 2 1 26 26 H 1.08998 * 109.47470 * 60.00062 * 4 3 2 27 27 H 1.09009 * 109.47428 * 300.00164 * 4 3 2 28 28 H 0.97000 * 120.00132 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.46854 * 319.80269 * 13 2 1 30 30 H 1.08999 * 109.47526 * 79.79605 * 13 2 1 31 31 H 1.09005 * 109.52084 * 304.68482 * 16 14 13 32 32 H 1.08996 * 109.52465 * 64.87914 * 16 14 13 33 33 H 1.09000 * 109.52725 * 182.15026 * 18 17 16 34 34 H 1.09000 * 109.57888 * 61.98861 * 18 17 16 35 35 H 1.08994 * 109.52641 * 295.41595 * 19 18 17 36 36 H 1.08996 * 109.57995 * 175.24807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1711 3.4645 1.3181 6 1 2.7192 3.8326 0.4633 7 6 1.9650 4.2820 2.4090 8 7 1.2930 3.8356 3.4477 9 14 2.6344 6.0260 2.4090 10 1 2.0432 6.7831 1.2767 11 1 2.2810 6.6918 3.6885 12 1 4.1117 5.9891 2.2624 13 6 1.9954 -0.7659 -1.1376 14 6 3.4452 -1.1655 -0.8562 15 1 4.0412 -0.2710 -0.6756 16 6 4.0102 -1.9240 -2.0608 17 8 5.3258 -2.3905 -1.7469 18 6 5.3733 -3.2373 -0.5947 19 6 4.8085 -2.4789 0.6100 20 8 3.4928 -2.0124 0.2960 21 1 -0.3634 0.5930 -0.8392 22 1 -0.3633 -1.0234 -0.0938 23 1 -0.3633 0.4305 0.9332 24 1 1.5611 1.9273 -0.8308 25 1 3.0797 1.3444 -0.1082 26 1 2.0658 1.5015 2.1492 27 1 0.5472 2.0845 1.4266 28 1 1.1477 4.4109 4.2151 29 1 1.3928 -1.6627 -1.2819 30 1 1.9557 -0.1529 -2.0380 31 1 3.3674 -2.7739 -2.2902 32 1 4.0558 -1.2576 -2.9221 33 1 6.4062 -3.5220 -0.3941 34 1 4.7771 -4.1320 -0.7741 35 1 5.4511 -1.6290 0.8394 36 1 4.7630 -3.1444 1.4720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595743074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:00 Heat of formation + Delta-G solvation = -113.888944 kcal Electronic energy + Delta-G solvation = -16536.889831 eV Core-core repulsion = 13827.237456 eV Total energy + Delta-G solvation = -2709.652375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91680 -38.62044 -36.84750 -35.21532 -33.23493 -31.50950 -29.59504 -27.65800 -26.99066 -24.95589 -23.48802 -22.19645 -21.36498 -18.60466 -17.80061 -17.55314 -17.09554 -16.56157 -16.44086 -16.23930 -15.86377 -15.45590 -14.95605 -14.34679 -14.18686 -14.08992 -13.39856 -13.25486 -13.04489 -12.85013 -12.64416 -12.57487 -12.44210 -12.26217 -11.82924 -11.56945 -11.43344 -11.24545 -11.12464 -10.54168 -10.06372 -9.13179 -8.20172 -6.32172 1.39218 1.42892 1.50818 2.39747 2.72460 2.78918 3.06368 3.12850 3.71949 3.93104 4.01913 4.09740 4.18609 4.31036 4.35931 4.43875 4.52109 4.56895 4.59426 4.69345 4.76136 4.79601 4.91059 4.94390 5.04925 5.12534 5.44606 5.64914 5.78089 6.00278 6.08897 6.16198 6.33692 6.35951 6.85007 7.36938 8.91972 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.005766 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.343064 B = 4854.695997 C = 5191.917702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.554 5.554 3 C 0.080 3.920 4 C 0.037 3.963 5 C -0.547 4.547 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.065 3.935 14 C 0.059 3.941 15 H 0.044 0.956 16 C 0.037 3.963 17 O -0.398 6.398 18 C 0.026 3.974 19 C 0.015 3.985 20 O -0.382 6.382 21 H 0.028 0.972 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.025 0.975 25 H 0.056 0.944 26 H -0.014 1.014 27 H -0.005 1.005 28 H 0.264 0.736 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -13.434 -10.975 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.278 5.278 3 C -0.047 4.047 4 C 0.000 4.000 5 C -0.585 4.585 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.192 1.192 13 C -0.063 4.063 14 C 0.001 3.999 15 H 0.062 0.938 16 C -0.040 4.040 17 O -0.317 6.317 18 C -0.050 4.050 19 C -0.062 4.062 20 O -0.301 6.301 21 H 0.047 0.953 22 H 0.103 0.897 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.004 0.996 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.976 -13.624 -10.383 17.838 hybrid contribution -0.074 1.417 -0.064 1.420 sum 4.901 -12.208 -10.447 16.799 Atomic orbital electron populations 1.22321 0.86771 1.01926 1.00421 1.61851 1.08512 1.14139 1.43319 1.22015 0.98386 0.86789 0.97522 1.18890 0.95051 0.93604 0.92463 1.21603 1.35516 0.98949 1.02447 0.92208 1.25983 0.95359 1.03343 0.94972 1.70115 1.41748 1.38420 1.06926 0.85476 0.79035 0.78725 0.77647 1.18964 1.20706 1.19231 1.22098 0.93774 0.98546 0.91901 1.22813 0.97564 0.92656 0.86890 0.93818 1.23271 0.84360 0.99418 0.96953 1.88045 1.28824 1.67730 1.47134 1.23389 1.04085 0.92690 0.84834 1.23412 0.84613 0.98972 0.99194 1.88177 1.28229 1.66675 1.47035 0.95310 0.89662 0.93434 0.95726 0.92604 0.99564 0.98624 0.92731 0.88652 0.91675 0.90532 0.86288 0.85768 0.91001 0.93705 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 9.23 127.69 1.18 2.32 16 2 N -0.55 -20.91 4.60 -922.46 -4.24 -25.15 16 3 C 0.08 3.54 4.72 86.30 0.41 3.95 16 4 C 0.04 2.08 4.89 29.85 0.15 2.23 16 5 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 6 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 9 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.06 1.83 4.69 86.30 0.40 2.24 16 14 C 0.06 1.72 2.92 30.64 0.09 1.80 16 15 H 0.04 1.48 6.74 -2.39 -0.02 1.46 16 16 C 0.04 0.81 6.34 72.03 0.46 1.27 16 17 O -0.40 -9.69 10.85 -136.00 -1.48 -11.17 16 18 C 0.03 0.52 7.05 72.03 0.51 1.03 16 19 C 0.01 0.37 7.05 72.03 0.51 0.87 16 20 O -0.38 -12.20 10.40 -136.00 -1.41 -13.61 16 21 H 0.03 0.90 8.07 -2.39 -0.02 0.88 16 22 H 0.08 2.36 7.85 -2.39 -0.02 2.34 16 23 H 0.05 1.88 6.73 -2.38 -0.02 1.86 16 24 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 25 H 0.06 2.46 6.61 -2.39 -0.02 2.45 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.00 -0.27 6.67 -2.38 -0.02 -0.29 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.10 2.31 7.75 -2.38 -0.02 2.29 16 30 H 0.07 1.62 8.00 -2.39 -0.02 1.60 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -70.64 290.97 0.61 -70.04 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.03 Total: 6.51 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 4.39 Total: -15.63 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -3.96 Total: -83.16 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -2.89 Total: -24.78 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.64 0.61 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595743074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.854 kcal (2) G-P(sol) polarization free energy of solvation -70.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds