Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 S 1.81402 * 109.46994 * 89.97710 * 6 5 4 8 8 C 1.81394 * 103.00165 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47467 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99682 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00008 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00209 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99498 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47137 * 60.00216 * 13 11 9 15 15 H 1.48510 * 109.46704 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46979 * 299.99667 * 13 11 9 17 17 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 18 18 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 19 19 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 20 20 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 21 21 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 22 22 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 23 23 H 1.08997 * 109.47168 * 300.00620 * 8 7 6 24 24 H 1.09003 * 109.47137 * 59.99814 * 8 7 6 25 25 H 0.96999 * 119.99715 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 16 5.8900 -1.0498 1.7309 8 6 7.6003 -1.6214 1.5352 9 6 8.2206 -1.8249 2.8935 10 1 7.6434 -1.6302 3.7853 11 6 9.5245 -2.2606 2.9977 12 7 10.2273 -2.4981 1.9117 13 14 10.2930 -2.5134 4.6814 14 1 9.5141 -3.5296 5.4335 15 1 11.6933 -2.9813 4.5212 16 1 10.2829 -1.2298 5.4279 17 16 2.5060 -1.3906 0.0078 18 1 -0.3635 -0.0004 -1.0276 19 1 -0.3634 -0.8898 0.5142 20 1 -0.3633 0.8901 0.5135 21 1 5.3883 -1.8252 -0.4927 22 1 5.9514 -0.1366 -0.4961 23 1 7.6081 -2.5634 0.9869 24 1 8.1719 -0.8752 0.9833 25 1 11.1445 -2.8050 1.9851 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596023120.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = 47.811959 kcal Electronic energy + Delta-G solvation = -11038.794501 eV Core-core repulsion = 8884.567645 eV Total energy + Delta-G solvation = -2154.226856 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.21772 -33.81476 -33.20467 -31.03751 -28.62478 -27.12337 -24.57852 -23.05819 -19.84561 -19.27780 -16.66360 -16.07436 -15.57561 -14.97840 -14.54211 -14.04398 -13.62803 -13.35169 -12.94313 -12.71488 -12.59838 -12.33630 -12.04769 -10.88624 -10.87153 -10.45308 -10.36274 -10.15252 -9.73383 -9.65431 -9.34717 -8.98396 -8.65753 -6.84674 -6.24378 -4.29252 0.36706 0.89350 1.38099 2.21836 2.87458 3.26150 3.29302 3.33493 3.63741 3.97886 4.31883 4.49094 4.80329 5.06770 5.12996 5.14721 5.39716 5.53435 5.63635 5.73417 6.99744 7.02537 7.69561 7.93474 8.60206 8.71998 9.34189 10.86746 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.074134 B = 0.004970 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.602427 B = 5632.791338 C = 5698.371323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.033 4.033 3 N -0.260 5.260 4 N -0.253 5.253 5 C 0.019 3.981 6 C -0.023 4.023 7 S -0.274 6.274 8 C 0.091 3.909 9 C -0.515 4.515 10 H 0.067 0.933 11 C 0.067 3.933 12 N -0.892 5.892 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.273 1.273 17 S 0.180 5.820 18 H 0.088 0.912 19 H 0.083 0.917 20 H 0.092 0.908 21 H 0.100 0.900 22 H 0.109 0.891 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.994 -0.050 -5.558 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.313 4.313 3 N -0.099 5.099 4 N -0.092 5.092 5 C -0.260 4.260 6 C -0.175 4.175 7 S -0.049 6.049 8 C -0.056 4.056 9 C -0.554 4.554 10 H 0.086 0.914 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.735 3.265 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.198 1.198 17 S 0.423 5.577 18 H 0.106 0.894 19 H 0.102 0.898 20 H 0.110 0.890 21 H 0.118 0.882 22 H 0.128 0.872 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.324 0.441 -4.728 17.001 hybrid contribution 1.295 -0.280 -0.293 1.357 sum -15.029 0.161 -5.021 15.846 Atomic orbital electron populations 1.20332 0.84092 1.04587 1.04068 1.29191 1.04212 0.92280 1.05571 1.71444 0.96983 1.26921 1.14545 1.71446 1.06154 1.16853 1.14699 1.28468 1.01857 0.92454 1.03190 1.21705 0.89288 1.04340 1.02127 1.86989 1.23116 1.89596 1.05172 1.21146 0.84293 0.98586 1.01598 1.20591 0.97347 1.46600 0.90892 0.91450 1.24951 0.96453 0.94731 0.97587 1.69936 1.10132 1.44899 1.28001 0.86383 0.78048 0.78913 0.83158 1.19863 1.20994 1.19844 1.83659 0.97432 1.11397 1.65186 0.89350 0.89773 0.88975 0.88164 0.87238 0.94253 0.94161 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.48 36.00 0.38 -0.15 15 2 C -0.03 -0.42 7.53 -13.30 -0.10 -0.52 15 3 N -0.26 -4.27 11.66 32.58 0.38 -3.89 15 4 N -0.25 -4.59 11.66 32.58 0.38 -4.22 15 5 C 0.02 0.31 6.79 -13.30 -0.09 0.22 15 6 C -0.02 -0.40 6.54 36.01 0.24 -0.16 15 7 S -0.27 -5.93 21.64 -107.50 -2.33 -8.26 15 8 C 0.09 2.30 5.70 36.01 0.21 2.50 15 9 C -0.51 -14.32 9.13 -34.44 -0.31 -14.63 15 10 H 0.07 1.88 7.71 -52.49 -0.40 1.47 15 11 C 0.07 1.85 5.46 -17.82 -0.10 1.76 15 12 N -0.89 -25.50 13.29 55.43 0.74 -24.77 15 13 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 15 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 17 S 0.18 2.25 23.04 -107.50 -2.48 -0.23 15 18 H 0.09 0.52 8.14 -51.93 -0.42 0.09 15 19 H 0.08 0.47 8.14 -51.93 -0.42 0.05 15 20 H 0.09 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.10 1.48 8.14 -51.92 -0.42 1.06 15 22 H 0.11 1.83 8.14 -51.92 -0.42 1.41 15 23 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.04 1.06 8.14 -51.92 -0.42 0.64 15 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -31.05 256.78 -6.74 -37.79 By element: Atomic # 1 Polarization: -2.96 SS G_CDS: -2.50 Total: -5.45 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 0.22 Total: -10.98 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 1.50 Total: -32.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -4.80 Total: -8.49 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.05 -6.74 -37.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596023120.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.600 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds