Wall clock time and date at job start Sun Mar 29 2020 22:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00260 * 2 1 4 4 C 1.53002 * 109.47393 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46814 * 295.00466 * 4 3 2 6 6 C 1.52997 * 109.46743 * 55.00117 * 4 3 2 7 7 S 1.81405 * 109.46953 * 175.00151 * 4 3 2 8 8 C 1.81403 * 102.99607 * 174.99949 * 7 4 3 9 9 C 1.53005 * 109.46660 * 180.02562 * 8 7 4 10 10 C 1.50696 * 115.54984 * 39.93511 * 9 8 7 11 11 H 1.07998 * 120.00262 * 264.88146 * 10 9 8 12 12 C 1.37878 * 119.99936 * 84.88683 * 10 9 8 13 13 N 1.31514 * 120.00101 * 353.91907 * 12 10 9 14 14 Si 1.86803 * 120.00179 * 173.91517 * 12 10 9 15 15 H 1.48496 * 109.47033 * 59.99947 * 14 12 10 16 16 H 1.48498 * 109.46961 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46916 * 300.00359 * 14 12 10 18 18 C 1.53002 * 117.49628 * 254.22519 * 9 8 7 19 19 C 1.52997 * 117.49520 * 185.60531 * 9 8 7 20 20 H 1.09001 * 109.46991 * 300.00046 * 1 2 3 21 21 H 1.08998 * 109.46751 * 59.99994 * 1 2 3 22 22 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47222 * 300.00748 * 3 2 1 24 24 H 1.09007 * 109.46653 * 59.99686 * 3 2 1 25 25 H 1.09006 * 109.47102 * 60.00729 * 6 4 3 26 26 H 1.09005 * 109.46954 * 179.97438 * 6 4 3 27 27 H 1.08992 * 109.47671 * 299.99744 * 6 4 3 28 28 H 1.08996 * 109.47278 * 299.99958 * 8 7 4 29 29 H 1.09000 * 109.46720 * 60.00490 * 8 7 4 30 30 H 0.96999 * 119.99969 * 174.96059 * 13 12 10 31 31 H 1.08996 * 117.49749 * 0.02562 * 18 9 8 32 32 H 1.08999 * 117.49149 * 145.02175 * 18 9 8 33 33 H 1.09000 * 117.49674 * 214.97741 * 19 9 8 34 34 H 1.08998 * 117.50244 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8630 0.7231 0.9322 6 6 3.9790 0.3194 -1.1807 7 16 4.2729 2.8354 -0.1484 8 6 6.0485 2.5061 0.0235 9 6 6.8234 3.8213 -0.0807 10 6 6.1930 5.0035 0.6091 11 1 5.5692 5.6853 0.0502 12 6 6.4126 5.2148 1.9537 13 7 7.0718 4.3229 2.6605 14 14 5.7740 6.7681 2.7717 15 1 4.2965 6.8274 2.6359 16 1 6.1393 6.7556 4.2110 17 1 6.3792 7.9563 2.1182 18 6 7.5938 4.0865 -1.3757 19 6 8.3512 3.7419 -0.0918 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6886 1.8464 -0.8899 24 1 1.6886 1.8464 0.8900 25 1 3.6515 0.7810 -2.1123 26 1 5.0657 0.2337 -1.1805 27 1 3.5360 -0.6724 -1.0912 28 1 6.2407 2.0474 0.9934 29 1 6.3709 1.8302 -0.7685 30 1 7.2901 4.5041 3.5881 31 1 7.5483 3.3243 -2.1535 32 1 7.6447 5.1164 -1.7290 33 1 8.9005 4.5451 0.3995 34 1 8.8044 2.7529 -0.0244 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596348300.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:30 Heat of formation + Delta-G solvation = -48.996245 kcal Electronic energy + Delta-G solvation = -14178.653818 eV Core-core repulsion = 11816.849610 eV Total energy + Delta-G solvation = -2361.804207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.03361 -38.40279 -34.53961 -33.95328 -29.54652 -28.20762 -27.29990 -26.60405 -22.92584 -22.66477 -21.04029 -18.19316 -17.79965 -17.00556 -16.72231 -16.49430 -15.88702 -15.60557 -15.16481 -14.73935 -14.39704 -14.10276 -13.52857 -13.44055 -12.98709 -12.90844 -12.78732 -12.40599 -12.37552 -12.22510 -11.99489 -11.97001 -11.51157 -10.78068 -10.66064 -10.51524 -10.41515 -9.85149 -8.34074 -8.07099 -6.15590 0.84165 1.43390 1.44755 1.50996 1.98906 2.46745 2.96307 3.23257 3.49144 3.78348 3.93091 4.22584 4.30528 4.39987 4.46436 4.50007 4.61560 4.63287 4.65591 4.68579 4.84357 4.87591 4.97203 4.99315 5.02294 5.23616 5.24887 5.56538 5.63885 5.80373 6.15452 6.40127 6.86098 7.51113 9.00908 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.007619 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.649215 B = 3674.022526 C = 4380.986645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.094 3.906 4 C -0.076 4.076 5 H 0.073 0.927 6 C -0.129 4.129 7 S -0.242 6.242 8 C -0.013 4.013 9 C 0.022 3.978 10 C -0.488 4.488 11 H 0.048 0.952 12 C 0.035 3.965 13 N -0.905 5.905 14 Si 0.938 3.062 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.183 4.183 19 C -0.154 4.154 20 H 0.046 0.954 21 H 0.051 0.949 22 H 0.104 0.896 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.258 0.742 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 -7.356 -5.787 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.016 3.984 4 C -0.205 4.205 5 H 0.091 0.909 6 C -0.188 4.188 7 S -0.013 6.013 8 C -0.162 4.162 9 C 0.021 3.979 10 C -0.527 4.527 11 H 0.066 0.934 12 C -0.166 4.166 13 N -0.543 5.543 14 Si 0.764 3.236 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.220 4.220 19 C -0.193 4.193 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.122 0.878 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.003 -6.632 -5.733 12.566 hybrid contribution 0.462 -0.032 1.092 1.186 sum -8.541 -6.663 -4.641 11.785 Atomic orbital electron populations 1.22961 0.79211 1.04081 1.00862 1.87817 1.21594 1.27445 1.95601 1.22011 0.90418 0.84782 1.01190 1.23130 0.97549 0.97317 1.02501 0.90881 1.21858 1.00695 0.99730 0.96474 1.86933 1.07255 1.11272 1.95838 1.22766 0.91850 1.00038 1.01497 1.18632 0.90177 0.92566 0.96537 1.20417 1.29903 1.08880 0.93494 0.93384 1.25486 0.95354 0.98319 0.97413 1.70087 1.41146 1.34263 1.08758 0.85920 0.79061 0.81130 0.77442 1.19944 1.21127 1.19821 1.23071 1.06777 1.01042 0.91098 1.22474 0.96276 0.99950 1.00604 0.93547 0.93018 0.87798 0.91931 0.92944 0.91461 0.93108 0.90715 0.93144 0.91207 0.93277 0.88868 0.90339 0.91978 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -10.78 9.82 -148.98 -1.46 -12.25 16 3 C 0.09 2.71 5.44 71.98 0.39 3.10 16 4 C -0.08 -2.53 3.16 30.59 0.10 -2.43 16 5 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 6 C -0.13 -3.67 8.90 71.98 0.64 -3.03 16 7 S -0.24 -10.04 20.00 -56.49 -1.13 -11.17 16 8 C -0.01 -0.57 5.75 71.98 0.41 -0.16 16 9 C 0.02 1.08 1.65 -52.93 -0.09 0.99 16 10 C -0.49 -26.43 7.55 25.60 0.19 -26.24 16 11 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 12 C 0.03 1.91 5.39 84.65 0.46 2.36 16 13 N -0.90 -51.40 12.93 21.45 0.28 -51.12 16 14 Si 0.94 43.88 29.55 68.60 2.03 45.91 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 18 C -0.18 -7.64 9.88 30.60 0.30 -7.34 16 19 C -0.15 -7.03 9.46 30.59 0.29 -6.74 16 20 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 21 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.05 1.46 6.92 -2.38 -0.02 1.44 16 27 H 0.07 1.96 7.56 -2.39 -0.02 1.94 16 28 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.72 6.95 -2.39 -0.02 2.71 16 30 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 31 H 0.09 3.37 8.08 -2.39 -0.02 3.35 16 32 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -59.20 297.01 4.70 -54.50 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.04 Total: 11.91 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 3.95 Total: -37.78 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.28 Total: -51.12 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -1.46 Total: -12.25 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -10.04 SS G_CDS: -1.13 Total: -11.17 kcal Total: -59.20 4.70 -54.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596348300.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.506 kcal (2) G-P(sol) polarization free energy of solvation -59.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds