Wall clock time and date at job start Sun Mar 29 2020 22:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00377 * 2 1 4 4 C 1.52995 * 109.47464 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46844 * 65.00357 * 4 3 2 6 6 C 1.53004 * 109.47549 * 305.00552 * 4 3 2 7 7 S 1.81395 * 109.47108 * 184.99906 * 4 3 2 8 8 C 1.81402 * 103.00065 * 185.00124 * 7 4 3 9 9 C 1.53006 * 109.47366 * 174.76834 * 8 7 4 10 10 C 1.50695 * 115.54527 * 39.82172 * 9 8 7 11 11 H 1.07996 * 120.00380 * 272.71520 * 10 9 8 12 12 C 1.37878 * 120.00091 * 92.71790 * 10 9 8 13 13 N 1.31512 * 120.00258 * 173.35428 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 353.34824 * 12 10 9 15 15 H 1.48504 * 109.46761 * 94.22094 * 14 12 10 16 16 H 1.48501 * 109.47360 * 214.21799 * 14 12 10 17 17 H 1.48500 * 109.47101 * 334.22398 * 14 12 10 18 18 C 1.53001 * 117.50018 * 254.11464 * 9 8 7 19 19 C 1.52999 * 117.49913 * 185.48953 * 9 8 7 20 20 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46575 * 60.00270 * 1 2 3 22 22 H 1.08999 * 109.47153 * 299.99995 * 1 2 3 23 23 H 1.08998 * 109.46933 * 300.00206 * 3 2 1 24 24 H 1.09002 * 109.46704 * 59.99954 * 3 2 1 25 25 H 1.09002 * 109.46485 * 299.99968 * 6 4 3 26 26 H 1.09000 * 109.46908 * 59.99135 * 6 4 3 27 27 H 1.08992 * 109.47260 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47237 * 294.77367 * 8 7 4 29 29 H 1.09007 * 109.47089 * 54.77622 * 8 7 4 30 30 H 0.97004 * 120.00128 * 180.02562 * 13 12 10 31 31 H 1.08999 * 117.49809 * 0.02562 * 18 9 8 32 32 H 1.08998 * 117.49374 * 145.02088 * 18 9 8 33 33 H 1.09003 * 117.49763 * 214.97925 * 19 9 8 34 34 H 1.08997 * 117.50170 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8637 0.7228 -0.9306 6 6 3.9781 0.3196 1.1825 7 16 4.2727 2.8352 0.1497 8 6 6.0484 2.5060 -0.0207 9 6 6.8127 3.8312 -0.0465 10 6 6.3155 4.8868 0.9071 11 1 5.5261 5.5590 0.6048 12 6 6.8685 4.9947 2.1655 13 7 6.5290 5.9946 2.9495 14 14 8.0997 3.7204 2.7570 15 1 9.4782 4.1979 2.4793 16 1 7.9330 3.5118 4.2178 17 1 7.8667 2.4388 2.0441 18 6 7.3689 4.2999 -1.3926 19 6 8.3180 3.7735 -0.3141 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 3.6498 0.7814 2.1137 26 1 3.5350 -0.6722 1.0929 27 1 5.0646 0.2332 1.1827 28 1 6.3894 1.9062 0.8233 29 1 6.2300 1.9638 -0.9487 30 1 6.9183 6.0706 3.8347 31 1 7.1899 3.6643 -2.2598 32 1 7.3751 5.3721 -1.5887 33 1 8.9487 4.4994 0.1992 34 1 8.7640 2.7914 -0.4714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596348301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:32 Heat of formation + Delta-G solvation = -28.918814 kcal Electronic energy + Delta-G solvation = -14242.017420 eV Core-core repulsion = 11881.083836 eV Total energy + Delta-G solvation = -2360.933585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.99890 -36.97792 -33.35271 -32.05572 -28.20959 -27.15807 -25.61657 -25.34991 -21.67010 -21.42863 -19.04352 -16.73694 -16.46383 -15.95874 -15.38964 -14.91197 -14.63583 -13.92615 -13.83279 -13.28481 -13.05718 -12.63646 -12.52466 -12.20291 -11.87837 -11.39469 -11.23782 -10.93433 -10.86639 -10.61630 -10.37761 -10.16353 -9.70009 -9.65672 -9.15343 -8.97022 -8.57193 -8.35431 -6.82383 -6.08459 -4.09008 2.20011 3.29559 3.37775 3.39570 3.45272 3.97078 4.44127 4.89449 4.96342 5.05417 5.20331 5.27463 5.31213 5.47871 5.55479 5.66838 5.71964 5.77672 5.89036 6.02375 6.09023 6.14036 6.18877 6.37316 6.45699 6.47575 6.70209 6.99937 7.10983 7.13019 7.73145 8.51183 8.97053 9.55097 11.03389 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.007291 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.865322 B = 3839.169801 C = 4052.586248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.086 3.914 4 C -0.093 4.093 5 H 0.080 0.920 6 C -0.138 4.138 7 S -0.184 6.184 8 C -0.046 4.046 9 C 0.013 3.987 10 C -0.477 4.477 11 H 0.083 0.917 12 C 0.084 3.916 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.281 1.281 16 H -0.294 1.294 17 H -0.260 1.260 18 C -0.176 4.176 19 C -0.196 4.196 20 H 0.083 0.917 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -10.734 -5.518 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.009 3.991 4 C -0.222 4.222 5 H 0.099 0.901 6 C -0.196 4.196 7 S 0.045 5.955 8 C -0.194 4.194 9 C 0.011 3.989 10 C -0.516 4.516 11 H 0.101 0.899 12 C -0.119 4.119 13 N -0.529 5.529 14 Si 0.706 3.294 15 H -0.207 1.207 16 H -0.220 1.220 17 H -0.185 1.185 18 C -0.213 4.213 19 C -0.235 4.235 20 H 0.101 0.899 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.691 -9.855 -5.180 12.989 hybrid contribution 1.215 -1.610 0.220 2.029 sum -5.476 -11.465 -4.960 13.639 Atomic orbital electron populations 1.22708 0.81259 1.02401 1.00054 1.87849 1.19393 1.28250 1.95485 1.22160 0.91578 0.84182 1.01194 1.23206 0.96674 1.00345 1.01925 0.90132 1.21909 1.00787 0.99470 0.97481 1.87339 1.05338 1.06746 1.96126 1.23224 0.93042 1.01193 1.01987 1.19062 0.90272 0.92959 0.96576 1.20134 1.20767 1.13942 0.96708 0.89915 1.24921 0.96010 0.94679 0.96329 1.69895 1.43968 1.29629 1.09445 0.86895 0.81621 0.83418 0.77480 1.20677 1.22042 1.18492 1.22898 1.05673 1.00548 0.92214 1.22992 0.94669 1.00826 1.05053 0.89861 0.94174 0.94027 0.92614 0.92251 0.91639 0.91970 0.92917 0.90842 0.92579 0.92595 0.90951 0.89289 0.89160 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.37 9.82 -35.23 -0.35 -5.72 16 3 C 0.09 1.25 5.44 37.16 0.20 1.45 16 4 C -0.09 -1.50 3.16 -26.73 -0.08 -1.58 16 5 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 6 C -0.14 -2.14 8.90 37.16 0.33 -1.81 16 7 S -0.18 -3.72 20.00 -107.50 -2.15 -5.87 16 8 C -0.05 -0.95 5.53 37.16 0.21 -0.74 16 9 C 0.01 0.30 1.12 -155.66 -0.17 0.13 16 10 C -0.48 -13.08 8.14 -34.44 -0.28 -13.36 16 11 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 12 C 0.08 2.37 5.46 -17.82 -0.10 2.27 16 13 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 14 Si 0.88 21.58 24.98 -169.99 -4.25 17.34 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.26 -6.05 5.47 56.52 0.31 -5.74 16 18 C -0.18 -3.58 9.88 -26.73 -0.26 -3.84 16 19 C -0.20 -4.14 7.53 -26.73 -0.20 -4.34 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.89 7.56 -51.93 -0.39 0.49 16 27 H 0.05 0.83 7.07 -51.93 -0.37 0.46 16 28 H 0.07 1.55 5.83 -51.92 -0.30 1.25 16 29 H 0.06 1.03 7.95 -51.92 -0.41 0.61 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 32 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.09 2.01 6.99 -51.93 -0.36 1.64 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -29.53 287.73 -6.60 -36.12 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.71 Total: 0.35 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 0.75 Total: -20.39 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.77 Total: -26.16 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.35 Total: -5.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.25 Total: 17.34 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.15 Total: -5.87 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.53 -6.60 -36.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596348301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.202 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds