Wall clock time and date at job start Sun Mar 29 2020 22:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00377 * 2 1 4 4 C 1.52995 * 109.47464 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46844 * 65.00357 * 4 3 2 6 6 C 1.53004 * 109.47549 * 305.00552 * 4 3 2 7 7 S 1.81395 * 109.47108 * 184.99906 * 4 3 2 8 8 C 1.81402 * 103.00065 * 185.00124 * 7 4 3 9 9 C 1.53006 * 109.47366 * 174.76834 * 8 7 4 10 10 C 1.50695 * 115.54527 * 39.82172 * 9 8 7 11 11 H 1.07996 * 120.00380 * 272.71520 * 10 9 8 12 12 C 1.37878 * 120.00091 * 92.71790 * 10 9 8 13 13 N 1.31512 * 120.00258 * 173.35428 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 353.34824 * 12 10 9 15 15 H 1.48504 * 109.46761 * 94.22094 * 14 12 10 16 16 H 1.48501 * 109.47360 * 214.21799 * 14 12 10 17 17 H 1.48500 * 109.47101 * 334.22398 * 14 12 10 18 18 C 1.53001 * 117.50018 * 254.11464 * 9 8 7 19 19 C 1.52999 * 117.49913 * 185.48953 * 9 8 7 20 20 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46575 * 60.00270 * 1 2 3 22 22 H 1.08999 * 109.47153 * 299.99995 * 1 2 3 23 23 H 1.08998 * 109.46933 * 300.00206 * 3 2 1 24 24 H 1.09002 * 109.46704 * 59.99954 * 3 2 1 25 25 H 1.09002 * 109.46485 * 299.99968 * 6 4 3 26 26 H 1.09000 * 109.46908 * 59.99135 * 6 4 3 27 27 H 1.08992 * 109.47260 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47237 * 294.77367 * 8 7 4 29 29 H 1.09007 * 109.47089 * 54.77622 * 8 7 4 30 30 H 0.97004 * 120.00128 * 180.02562 * 13 12 10 31 31 H 1.08999 * 117.49809 * 0.02562 * 18 9 8 32 32 H 1.08998 * 117.49374 * 145.02088 * 18 9 8 33 33 H 1.09003 * 117.49763 * 214.97925 * 19 9 8 34 34 H 1.08997 * 117.50170 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8637 0.7228 -0.9306 6 6 3.9781 0.3196 1.1825 7 16 4.2727 2.8352 0.1497 8 6 6.0484 2.5060 -0.0207 9 6 6.8127 3.8312 -0.0465 10 6 6.3155 4.8868 0.9071 11 1 5.5261 5.5590 0.6048 12 6 6.8685 4.9947 2.1655 13 7 6.5290 5.9946 2.9495 14 14 8.0997 3.7204 2.7570 15 1 9.4782 4.1979 2.4793 16 1 7.9330 3.5118 4.2178 17 1 7.8667 2.4388 2.0441 18 6 7.3689 4.2999 -1.3926 19 6 8.3180 3.7735 -0.3141 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 3.6498 0.7814 2.1137 26 1 3.5350 -0.6722 1.0929 27 1 5.0646 0.2332 1.1827 28 1 6.3894 1.9062 0.8233 29 1 6.2300 1.9638 -0.9487 30 1 6.9183 6.0706 3.8347 31 1 7.1899 3.6643 -2.2598 32 1 7.3751 5.3721 -1.5887 33 1 8.9487 4.4994 0.1992 34 1 8.7640 2.7914 -0.4714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596348301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:32 Heat of formation + Delta-G solvation = -46.988058 kcal Electronic energy + Delta-G solvation = -14242.800962 eV Core-core repulsion = 11881.083836 eV Total energy + Delta-G solvation = -2361.717126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.03673 -38.71640 -34.55204 -34.17835 -29.77965 -28.24721 -27.40480 -26.61906 -23.31744 -22.69980 -20.88752 -18.43838 -17.81992 -17.02052 -16.97343 -16.52845 -15.89291 -15.48687 -15.25622 -14.83947 -14.70016 -14.44826 -13.73039 -13.65533 -13.19677 -12.89051 -12.60444 -12.40156 -12.30382 -12.07669 -12.01391 -11.89699 -11.66030 -10.87357 -10.66837 -10.65061 -10.54633 -10.10482 -8.42366 -8.24430 -6.28180 0.75885 1.35551 1.39136 1.49696 1.91824 2.39833 2.94768 3.09030 3.23766 3.77212 3.91462 4.03171 4.24748 4.30060 4.39908 4.45269 4.49339 4.52231 4.61775 4.63085 4.73031 4.83936 4.84587 4.85730 4.95285 5.06685 5.22502 5.30629 5.48403 5.73098 6.14615 6.34944 6.77200 7.38826 8.91629 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.007291 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.865322 B = 3839.169801 C = 4052.586248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.091 3.909 4 C -0.073 4.073 5 H 0.093 0.907 6 C -0.134 4.134 7 S -0.249 6.249 8 C -0.032 4.032 9 C -0.019 4.019 10 C -0.468 4.468 11 H 0.032 0.968 12 C 0.026 3.974 13 N -0.947 5.947 14 Si 0.934 3.066 15 H -0.271 1.271 16 H -0.301 1.301 17 H -0.233 1.233 18 C -0.161 4.161 19 C -0.187 4.187 20 H 0.104 0.896 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.263 0.737 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -13.615 -6.881 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.013 3.987 4 C -0.202 4.202 5 H 0.111 0.889 6 C -0.193 4.193 7 S -0.021 6.021 8 C -0.180 4.180 9 C -0.020 4.020 10 C -0.506 4.506 11 H 0.050 0.950 12 C -0.172 4.172 13 N -0.587 5.587 14 Si 0.760 3.240 15 H -0.196 1.196 16 H -0.228 1.228 17 H -0.156 1.156 18 C -0.198 4.198 19 C -0.226 4.226 20 H 0.122 0.878 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.163 -12.744 -6.573 15.608 hybrid contribution 0.895 -0.692 0.566 1.265 sum -5.268 -13.437 -6.007 15.633 Atomic orbital electron populations 1.22958 0.79261 1.04077 1.00819 1.87808 1.21519 1.27366 1.95598 1.22019 0.90643 0.84823 1.01170 1.23134 0.97375 0.96905 1.02749 0.88853 1.21872 1.00790 0.99986 0.96640 1.87567 1.06692 1.11396 1.96418 1.23057 0.92018 0.99630 1.03316 1.19008 0.92210 0.93269 0.97559 1.20189 1.18893 1.13929 0.97599 0.94979 1.25736 0.98322 0.96566 0.96565 1.70050 1.46433 1.32208 1.10050 0.85973 0.79455 0.81995 0.76622 1.19622 1.22848 1.15599 1.22938 1.03916 1.00603 0.92313 1.23039 0.92993 1.02150 1.04412 0.87767 0.93115 0.93587 0.91992 0.93085 0.92773 0.90280 0.93000 0.91255 0.89474 0.92768 0.87494 0.90566 0.90739 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -10.10 9.82 -148.98 -1.46 -11.57 16 3 C 0.09 2.48 5.44 71.98 0.39 2.88 16 4 C -0.07 -2.20 3.16 30.59 0.10 -2.10 16 5 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 6 C -0.13 -3.87 8.90 71.98 0.64 -3.23 16 7 S -0.25 -9.90 20.00 -56.49 -1.13 -11.03 16 8 C -0.03 -1.23 5.53 71.98 0.40 -0.84 16 9 C -0.02 -0.83 1.12 -52.93 -0.06 -0.89 16 10 C -0.47 -26.23 8.14 25.60 0.21 -26.02 16 11 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 12 C 0.03 1.48 5.46 84.66 0.46 1.94 16 13 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 14 Si 0.93 44.16 24.98 68.60 1.71 45.87 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 17 H -0.23 -9.87 5.47 99.48 0.54 -9.33 16 18 C -0.16 -6.12 9.88 30.60 0.30 -5.81 16 19 C -0.19 -7.28 7.53 30.60 0.23 -7.05 16 20 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 2.03 7.56 -2.39 -0.02 2.01 16 27 H 0.05 1.49 7.07 -2.39 -0.02 1.47 16 28 H 0.07 2.71 5.83 -2.39 -0.01 2.70 16 29 H 0.09 2.82 7.95 -2.39 -0.02 2.80 16 30 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 32 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.07 3.14 6.99 -2.39 -0.02 3.13 16 34 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -65.41 287.73 4.22 -61.19 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.88 Total: 14.22 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 3.92 Total: -39.45 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.30 Total: -59.24 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.46 Total: -11.57 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.71 Total: 45.87 kcal Atomic # 16 Polarization: -9.90 SS G_CDS: -1.13 Total: -11.03 kcal Total: -65.41 4.22 -61.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596348301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.202 kcal (2) G-P(sol) polarization free energy of solvation -65.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds