Wall clock time and date at job start Sun Mar 29 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00439 * 2 1 4 4 H 1.09004 * 109.47094 * 30.00508 * 3 2 1 5 5 C 1.52999 * 109.47172 * 270.00038 * 3 2 1 6 6 C 1.52999 * 109.47320 * 149.99986 * 3 2 1 7 7 S 1.81408 * 109.47251 * 300.00475 * 6 3 2 8 8 C 1.81392 * 103.00033 * 179.97438 * 7 6 3 9 9 C 1.53001 * 109.47237 * 179.97438 * 8 7 6 10 10 C 1.50705 * 115.55013 * 297.82508 * 9 8 7 11 11 H 1.07998 * 119.99773 * 95.15356 * 10 9 8 12 12 C 1.37877 * 119.99810 * 274.88017 * 10 9 8 13 13 N 1.31515 * 119.99919 * 6.56582 * 12 10 9 14 14 Si 1.86794 * 119.99692 * 186.57166 * 12 10 9 15 15 H 1.48503 * 109.47493 * 90.00104 * 14 12 10 16 16 H 1.48507 * 109.47003 * 209.99621 * 14 12 10 17 17 H 1.48504 * 109.47373 * 329.99664 * 14 12 10 18 18 C 1.53001 * 117.49942 * 83.49065 * 9 8 7 19 19 C 1.53001 * 117.50182 * 152.15097 * 9 8 7 20 20 H 1.08994 * 109.47369 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47025 * 300.00075 * 1 2 3 22 22 H 1.09003 * 109.47135 * 59.99681 * 1 2 3 23 23 H 1.08999 * 109.46705 * 179.97438 * 5 3 2 24 24 H 1.09000 * 109.47141 * 299.99883 * 5 3 2 25 25 H 1.08994 * 109.46883 * 60.00343 * 5 3 2 26 26 H 1.09001 * 109.47677 * 180.02562 * 6 3 2 27 27 H 1.09000 * 109.47066 * 60.00072 * 6 3 2 28 28 H 1.08998 * 109.47687 * 60.00144 * 8 7 6 29 29 H 1.09003 * 109.47466 * 299.99497 * 8 7 6 30 30 H 0.97004 * 119.99783 * 184.58326 * 13 12 10 31 31 H 1.09003 * 117.50287 * 215.00334 * 18 9 8 32 32 H 1.09001 * 117.49614 * 0.02754 * 18 9 8 33 33 H 1.08993 * 117.49862 * 359.97438 * 19 9 8 34 34 H 1.09004 * 117.49936 * 144.97194 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2631 0.7212 7 16 3.1130 0.7106 2.4315 8 6 4.7950 0.7241 3.1106 9 6 4.7584 0.2752 4.5728 10 6 3.9640 1.1552 5.5032 11 1 2.9351 0.9150 5.7266 12 6 4.5526 2.2639 6.0736 13 7 5.7625 2.6274 5.7080 14 14 3.6316 3.2495 7.3657 15 1 3.9339 2.7036 8.7133 16 1 4.0573 4.6708 7.3006 17 1 2.1716 3.1579 7.1106 18 6 4.7561 -1.2295 4.8499 19 6 6.0104 -0.4001 5.1361 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.6607 2.7672 -1.4424 24 1 2.8829 1.0773 -1.9563 25 1 1.2569 1.8015 -1.9562 26 1 3.8022 2.2589 0.7217 27 1 4.0241 0.5692 0.2074 28 1 5.2029 1.7332 3.0509 29 1 5.4240 0.0434 2.5368 30 1 6.2029 3.3667 6.1558 31 1 4.1802 -1.5829 5.7052 32 1 4.7812 -1.8996 3.9905 33 1 6.8601 -0.5248 4.4649 34 1 6.2599 -0.2074 6.1796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596354344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:17 Heat of formation + Delta-G solvation = -49.489358 kcal Electronic energy + Delta-G solvation = -14125.155916 eV Core-core repulsion = 11763.330326 eV Total energy + Delta-G solvation = -2361.825590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.21287 -38.40055 -33.98927 -33.71529 -29.48337 -28.37625 -27.44088 -27.15336 -22.92880 -22.45205 -21.04976 -18.19624 -17.76957 -17.06917 -16.61008 -16.24498 -15.76624 -15.58406 -15.00915 -14.76771 -14.21383 -13.88746 -13.61380 -13.54687 -13.22737 -13.00316 -12.78683 -12.58378 -12.40811 -12.29802 -11.99925 -11.75002 -11.46050 -10.90629 -10.67875 -10.53509 -10.41114 -9.83446 -8.31641 -8.10144 -6.20012 0.94551 1.40910 1.42629 1.52300 2.01792 2.44549 2.84662 3.18564 3.53558 3.81054 4.08535 4.20120 4.23180 4.41412 4.44541 4.50965 4.58276 4.61939 4.68599 4.70264 4.81227 4.90247 4.95447 4.97799 4.99997 5.22361 5.26355 5.58894 5.62029 5.78588 6.30133 6.39955 6.83720 7.47555 8.98319 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.007046 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.773710 B = 3973.207790 C = 4304.381807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.103 3.897 4 H 0.065 0.935 5 C -0.160 4.160 6 C -0.090 4.090 7 S -0.269 6.269 8 C -0.018 4.018 9 C 0.028 3.972 10 C -0.495 4.495 11 H 0.046 0.954 12 C 0.029 3.971 13 N -0.907 5.907 14 Si 0.944 3.056 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.184 4.184 19 C -0.152 4.152 20 H 0.094 0.906 21 H 0.035 0.965 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 -1.741 -12.131 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C 0.045 3.955 4 H 0.083 0.917 5 C -0.219 4.219 6 C -0.238 4.238 7 S -0.040 6.040 8 C -0.166 4.166 9 C 0.026 3.974 10 C -0.533 4.533 11 H 0.064 0.936 12 C -0.171 4.171 13 N -0.545 5.545 14 Si 0.770 3.230 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.221 4.221 19 C -0.191 4.191 20 H 0.113 0.887 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.044 -1.996 -11.649 13.759 hybrid contribution 0.891 1.165 0.419 1.526 sum -6.153 -0.831 -11.230 12.832 Atomic orbital electron populations 1.22902 0.79960 1.03584 1.00363 1.87939 1.21018 1.27729 1.95160 1.21829 0.92247 0.85199 0.96262 0.91701 1.22204 1.03372 1.02252 0.94088 1.23621 1.01122 1.04337 0.94721 1.86968 1.16910 1.89848 1.10312 1.22777 0.93180 1.02130 0.98560 1.18571 0.98071 0.90444 0.90300 1.20550 0.97355 1.08713 1.26654 0.93558 1.25566 0.95946 0.97328 0.98247 1.70101 1.14757 1.28733 1.40902 0.85769 0.79257 0.78032 0.79946 1.20133 1.20904 1.19655 1.22994 1.01882 0.95127 1.02136 1.22512 0.91371 1.05212 1.00055 0.88735 0.94589 0.92352 0.90215 0.91622 0.90702 0.88799 0.89843 0.92685 0.92182 0.93131 0.90457 0.89319 0.90469 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.82 113.37 1.23 1.84 16 2 O -0.40 -11.55 9.94 -148.98 -1.48 -13.03 16 3 C 0.10 2.73 2.77 30.59 0.08 2.82 16 4 H 0.06 1.73 7.79 -2.39 -0.02 1.72 16 5 C -0.16 -3.05 9.53 71.98 0.69 -2.36 16 6 C -0.09 -2.81 5.66 71.98 0.41 -2.40 16 7 S -0.27 -11.26 20.97 -56.49 -1.18 -12.44 16 8 C -0.02 -0.83 5.81 71.98 0.42 -0.41 16 9 C 0.03 1.38 1.37 -52.93 -0.07 1.31 16 10 C -0.49 -27.58 8.38 25.60 0.21 -27.36 16 11 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 12 C 0.03 1.62 5.39 84.65 0.46 2.07 16 13 N -0.91 -51.73 12.93 21.45 0.28 -51.45 16 14 Si 0.94 44.09 29.54 68.60 2.03 46.12 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 C -0.18 -8.16 9.96 30.62 0.30 -7.85 16 19 C -0.15 -7.17 9.45 30.62 0.29 -6.88 16 20 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.04 0.83 8.09 -2.39 -0.02 0.81 16 22 H 0.06 0.98 7.87 -2.39 -0.02 0.96 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.05 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.06 2.51 8.11 -2.39 -0.02 2.49 16 30 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 31 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -61.78 301.12 4.69 -57.09 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.04 Total: 12.95 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 4.02 Total: -39.23 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.28 Total: -51.45 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.48 Total: -13.03 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -11.26 SS G_CDS: -1.18 Total: -12.44 kcal Total: -61.78 4.69 -57.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596354344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.598 kcal (2) G-P(sol) polarization free energy of solvation -61.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds