Wall clock time and date at job start Sun Mar 29 2020 22:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99753 * 2 1 4 4 H 1.09000 * 109.47172 * 329.99966 * 3 2 1 5 5 C 1.53001 * 109.47184 * 89.99641 * 3 2 1 6 6 C 1.53003 * 109.46996 * 210.00287 * 3 2 1 7 7 S 1.81396 * 109.47281 * 65.00018 * 6 3 2 8 8 C 1.81402 * 102.99928 * 179.97438 * 7 6 3 9 9 C 1.52998 * 109.47180 * 179.97438 * 8 7 6 10 10 C 1.50697 * 115.54891 * 65.33346 * 9 8 7 11 11 H 1.07993 * 120.00048 * 265.65592 * 10 9 8 12 12 C 1.37879 * 119.99749 * 85.65483 * 10 9 8 13 13 N 1.31517 * 120.00337 * 353.69796 * 12 10 9 14 14 Si 1.86804 * 119.99942 * 173.69560 * 12 10 9 15 15 H 1.48498 * 109.47004 * 59.99955 * 14 12 10 16 16 H 1.48500 * 109.47051 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46722 * 300.00018 * 14 12 10 18 18 C 1.53001 * 117.49734 * 279.66408 * 9 8 7 19 19 C 1.53004 * 117.49741 * 211.00451 * 9 8 7 20 20 H 1.09005 * 109.47189 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47333 * 299.99839 * 1 2 3 22 22 H 1.09002 * 109.47134 * 60.00060 * 1 2 3 23 23 H 1.09008 * 109.46640 * 60.00382 * 5 3 2 24 24 H 1.08996 * 109.46885 * 180.02562 * 5 3 2 25 25 H 1.09000 * 109.47325 * 300.00252 * 5 3 2 26 26 H 1.08996 * 109.46963 * 304.99613 * 6 3 2 27 27 H 1.09007 * 109.46433 * 184.99935 * 6 3 2 28 28 H 1.09001 * 109.47342 * 300.00544 * 8 7 6 29 29 H 1.09004 * 109.46791 * 59.99892 * 8 7 6 30 30 H 0.97001 * 120.00310 * 174.97267 * 13 12 10 31 31 H 1.08998 * 117.50180 * 359.97438 * 18 9 8 32 32 H 1.09005 * 117.49361 * 145.02442 * 18 9 8 33 33 H 1.08996 * 117.49252 * 214.98008 * 19 9 8 34 34 H 1.08997 * 117.49683 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2175 1.7715 1.4425 6 6 3.3588 1.2633 -0.7213 7 16 3.0972 0.8545 -2.4692 8 6 4.7810 0.8525 -3.1442 9 6 4.7319 0.5180 -4.6363 10 6 4.0407 1.5347 -5.5079 11 1 2.9953 1.4159 -5.7511 12 6 4.7432 2.6167 -5.9947 13 7 5.9796 2.8296 -5.6001 14 14 3.9388 3.7802 -7.2148 15 1 2.7301 4.3847 -6.5994 16 1 4.8976 4.8533 -7.5814 17 1 3.5496 3.0271 -8.4341 18 6 4.5962 -0.9553 -5.0259 19 6 5.9272 -0.2280 -5.2328 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 2.8829 1.0775 1.9563 24 1 2.6604 2.7674 1.4424 25 1 1.2567 1.8015 1.9563 26 1 3.9930 0.5053 -0.2618 27 1 3.8425 2.2372 -0.6444 28 1 5.2288 1.8367 -3.0065 29 1 5.3800 0.1049 -2.6241 30 1 6.4985 3.5470 -5.9963 31 1 4.5424 -1.6864 -4.2192 32 1 4.0074 -1.1891 -5.9130 33 1 6.2133 0.0164 -6.2557 34 1 6.7486 -0.4800 -4.5622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596354345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:18 Heat of formation + Delta-G solvation = -49.922764 kcal Electronic energy + Delta-G solvation = -14106.595133 eV Core-core repulsion = 11744.750749 eV Total energy + Delta-G solvation = -2361.844384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21991 -38.40412 -33.98984 -33.72321 -29.49351 -28.37825 -27.44187 -27.16171 -22.92909 -22.46091 -21.05199 -18.19371 -17.77802 -17.08138 -16.61667 -16.24225 -15.77435 -15.60550 -15.00870 -14.74230 -14.24902 -13.88232 -13.61828 -13.56113 -13.21240 -13.00400 -12.79737 -12.60225 -12.40597 -12.30309 -11.99527 -11.75942 -11.48363 -10.90813 -10.69293 -10.54734 -10.41397 -9.83695 -8.34099 -8.10242 -6.20647 0.93038 1.42541 1.43036 1.50550 1.99203 2.44449 2.83330 3.18141 3.54100 3.80085 4.09286 4.19218 4.22667 4.40851 4.44048 4.50785 4.57904 4.61185 4.68145 4.70284 4.80825 4.89815 4.94751 4.97468 5.00009 5.22438 5.25945 5.59008 5.62376 5.78033 6.29012 6.39795 6.83266 7.47115 8.97980 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029314 B = 0.006906 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.939285 B = 4053.467543 C = 4374.418197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.104 3.896 4 H 0.065 0.935 5 C -0.160 4.160 6 C -0.088 4.088 7 S -0.273 6.273 8 C -0.016 4.016 9 C 0.028 3.972 10 C -0.497 4.497 11 H 0.047 0.953 12 C 0.029 3.971 13 N -0.907 5.907 14 Si 0.944 3.056 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.273 1.273 18 C -0.184 4.184 19 C -0.151 4.151 20 H 0.095 0.905 21 H 0.058 0.942 22 H 0.036 0.964 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.260 0.740 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 -2.286 11.941 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C 0.045 3.955 4 H 0.083 0.917 5 C -0.219 4.219 6 C -0.237 4.237 7 S -0.045 6.045 8 C -0.165 4.165 9 C 0.026 3.974 10 C -0.535 4.535 11 H 0.065 0.935 12 C -0.171 4.171 13 N -0.545 5.545 14 Si 0.770 3.230 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.221 4.221 19 C -0.190 4.190 20 H 0.113 0.887 21 H 0.076 0.924 22 H 0.054 0.946 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.439 -2.472 11.454 13.879 hybrid contribution 0.958 1.144 -0.339 1.531 sum -6.481 -1.328 11.115 12.935 Atomic orbital electron populations 1.22909 0.79902 1.03626 1.00389 1.87928 1.21081 1.27736 1.95186 1.21826 0.92259 0.85173 0.96244 0.91728 1.22207 1.03398 1.02247 0.94089 1.23603 1.01107 1.04783 0.94161 1.86914 1.16432 1.93682 1.07475 1.22782 0.93015 1.01982 0.98708 1.18561 0.98917 0.90226 0.89672 1.20539 0.95949 1.06739 1.30296 0.93523 1.25575 0.95660 0.98142 0.97713 1.70092 1.10233 1.32325 1.41825 0.85835 0.78469 0.78835 0.79880 1.19902 1.20806 1.19854 1.22987 1.00610 0.96222 1.02287 1.22509 0.91009 1.05055 1.00473 0.88654 0.92370 0.94559 0.91565 0.90259 0.90680 0.89831 0.88716 0.92673 0.92204 0.93091 0.89341 0.90485 0.91807 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.82 113.37 1.23 1.82 16 2 O -0.40 -11.43 10.10 -148.98 -1.50 -12.94 16 3 C 0.10 2.73 2.72 30.60 0.08 2.82 16 4 H 0.06 1.74 7.79 -2.39 -0.02 1.72 16 5 C -0.16 -3.05 9.53 71.98 0.69 -2.37 16 6 C -0.09 -2.76 5.63 71.98 0.41 -2.35 16 7 S -0.27 -11.37 21.21 -56.49 -1.20 -12.57 16 8 C -0.02 -0.75 5.80 71.98 0.42 -0.34 16 9 C 0.03 1.39 1.34 -52.93 -0.07 1.31 16 10 C -0.50 -27.71 8.49 25.60 0.22 -27.49 16 11 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 12 C 0.03 1.62 5.39 84.65 0.46 2.08 16 13 N -0.91 -51.68 12.90 21.45 0.28 -51.40 16 14 Si 0.94 43.97 29.55 68.60 2.03 46.00 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 C -0.18 -8.16 9.96 30.62 0.30 -7.85 16 19 C -0.15 -7.13 9.40 30.62 0.29 -6.84 16 20 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 22 H 0.04 0.82 8.09 -2.39 -0.02 0.80 16 23 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.20 7.87 -2.39 -0.02 1.18 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.09 2.78 8.14 -2.39 -0.02 2.77 16 28 H 0.05 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.06 2.51 8.09 -2.39 -0.02 2.49 16 30 H 0.26 14.20 8.32 -92.71 -0.77 13.42 16 31 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 33 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -61.54 301.41 4.65 -56.89 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.04 Total: 13.23 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.01 Total: -39.21 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.28 Total: -51.40 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.50 Total: -12.94 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -11.37 SS G_CDS: -1.20 Total: -12.57 kcal Total: -61.54 4.65 -56.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596354345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.968 kcal (2) G-P(sol) polarization free energy of solvation -61.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds