Wall clock time and date at job start Sun Mar 29 2020 22:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47376 * 2 1 4 4 O 1.42898 * 109.47094 * 239.99687 * 2 1 3 5 5 C 1.53008 * 109.47019 * 119.99704 * 2 1 3 6 6 C 1.52995 * 109.46984 * 184.99622 * 5 2 1 7 7 S 1.81401 * 109.47135 * 180.02562 * 6 5 2 8 8 C 1.81397 * 103.00062 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47309 * 179.97438 * 8 7 6 10 10 C 1.50691 * 115.55016 * 297.18528 * 9 8 7 11 11 H 1.08005 * 120.00374 * 95.13344 * 10 9 8 12 12 C 1.37878 * 119.99851 * 274.86064 * 10 9 8 13 13 N 1.31510 * 120.00256 * 7.00167 * 12 10 9 14 14 Si 1.86806 * 120.00181 * 187.00455 * 12 10 9 15 15 H 1.48501 * 109.47140 * 59.99587 * 14 12 10 16 16 H 1.48495 * 109.47389 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46791 * 299.99924 * 14 12 10 18 18 C 1.52999 * 117.49659 * 82.84993 * 9 8 7 19 19 C 1.52997 * 117.49847 * 151.50792 * 9 8 7 20 20 H 1.09003 * 109.47098 * 299.99854 * 1 2 3 21 21 H 1.09000 * 109.47135 * 59.99659 * 1 2 3 22 22 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 23 23 H 0.96693 * 114.00038 * 300.00237 * 4 2 1 24 24 H 1.09006 * 109.46597 * 65.00406 * 5 2 1 25 25 H 1.08991 * 109.47040 * 305.00180 * 5 2 1 26 26 H 1.09009 * 109.47174 * 60.00541 * 6 5 2 27 27 H 1.09003 * 109.47501 * 300.00498 * 6 5 2 28 28 H 1.09000 * 109.47388 * 60.00490 * 8 7 6 29 29 H 1.08998 * 109.47213 * 300.00071 * 8 7 6 30 30 H 0.96999 * 120.00699 * 181.74528 * 13 12 10 31 31 H 1.08999 * 117.49948 * 215.00628 * 18 9 8 32 32 H 1.09008 * 117.49742 * 0.02600 * 18 9 8 33 33 H 1.08994 * 117.49992 * 359.97438 * 19 9 8 34 34 H 1.08999 * 117.49450 * 144.97578 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3137 7 16 4.1695 -1.4690 2.7945 8 6 5.9655 -1.2339 2.6968 9 6 6.6343 -1.9088 3.8961 10 6 6.2622 -1.3520 5.2461 11 1 5.4723 -1.8123 5.8211 12 6 6.9340 -0.2584 5.7497 13 7 7.8025 0.3831 4.9988 14 14 6.6108 0.3123 7.4989 15 1 6.9449 -0.7815 8.4461 16 1 7.4522 1.4992 7.7958 17 1 5.1777 0.6731 7.6449 18 6 6.9030 -3.4120 3.8016 19 6 8.0648 -2.4194 3.7123 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7210 -1.5952 -1.2328 24 1 1.7516 -1.7715 1.2056 25 1 1.6054 -0.2617 2.1370 26 1 3.8532 0.4370 1.3574 27 1 3.9994 -1.0729 0.4260 28 1 6.1935 -0.1680 2.7065 29 1 6.3404 -1.6772 1.7743 30 1 8.2937 1.1369 5.3612 31 1 6.8106 -3.9982 4.7159 32 1 6.6037 -3.9201 2.8848 33 1 8.5293 -2.2750 2.7370 34 1 8.7369 -2.3522 4.5678 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596407327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:54 Heat of formation + Delta-G solvation = -50.345357 kcal Electronic energy + Delta-G solvation = -13897.885253 eV Core-core repulsion = 11536.022543 eV Total energy + Delta-G solvation = -2361.862709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.97021 -36.53026 -32.88384 -31.90920 -29.87730 -27.61437 -25.32418 -23.78122 -21.43884 -21.09283 -19.13517 -16.45863 -16.19193 -15.97869 -15.26801 -14.60311 -14.23049 -13.98951 -13.66240 -13.29902 -12.95848 -12.54771 -12.14442 -11.93727 -11.85519 -11.26730 -11.00549 -10.96791 -10.86450 -10.82113 -10.47757 -10.22787 -9.99132 -9.58477 -9.17679 -8.79156 -8.41199 -7.97978 -6.74075 -6.01897 -4.06035 2.47340 3.34269 3.37988 3.41795 3.59571 4.28855 4.44260 4.73070 4.91577 5.07729 5.26879 5.27981 5.39420 5.42716 5.59345 5.71992 5.87001 5.94327 6.01937 6.16672 6.24613 6.25490 6.44014 6.56390 6.76156 6.85056 7.08655 7.43109 7.51071 7.55381 7.91331 8.43418 8.94822 9.59366 11.07712 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.006170 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.626525 B = 4536.710297 C = 5053.067447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.098 0.902 4 O -0.564 6.564 5 C -0.130 4.130 6 C -0.096 4.096 7 S -0.255 6.255 8 C -0.023 4.023 9 C 0.055 3.945 10 C -0.484 4.484 11 H 0.061 0.939 12 C 0.072 3.928 13 N -0.882 5.882 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.205 4.205 19 C -0.150 4.150 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.373 0.627 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.260 0.740 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 -1.528 -8.493 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.043 3.957 3 H 0.116 0.884 4 O -0.369 6.369 5 C -0.169 4.169 6 C -0.244 4.244 7 S -0.026 6.026 8 C -0.171 4.171 9 C 0.054 3.946 10 C -0.522 4.522 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.519 5.519 14 Si 0.717 3.283 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.242 4.242 19 C -0.190 4.190 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.220 0.780 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.193 -1.284 -7.838 12.922 hybrid contribution 0.465 0.571 0.175 0.757 sum -9.728 -0.713 -7.663 12.404 Atomic orbital electron populations 1.22493 0.96450 1.02530 1.02680 1.21973 0.92564 0.96836 0.84304 0.88372 1.86580 1.77350 1.28988 1.44030 1.22021 0.94301 1.01758 0.98840 1.23254 0.98124 1.03060 0.99959 1.86783 1.10219 1.73302 1.32340 1.23031 0.89948 1.04413 0.99749 1.18457 0.93690 0.89400 0.93086 1.20315 1.18898 1.12975 0.99994 0.92050 1.24944 0.95064 0.95769 0.97308 1.69997 1.26056 1.20448 1.35436 0.86703 0.78379 0.78044 0.85201 1.20247 1.21379 1.20049 1.23012 1.06254 0.94681 1.00292 1.22580 0.92440 1.03989 1.00011 0.91423 0.91953 0.92300 0.77973 0.91006 0.90182 0.90961 0.90665 0.89930 0.93609 0.93054 0.90312 0.91485 0.91908 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.53 37.16 0.35 -1.22 16 2 C 0.10 1.12 3.59 -26.73 -0.10 1.02 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 O -0.56 -6.47 12.87 -35.23 -0.45 -6.92 16 5 C -0.13 -1.64 4.90 -26.73 -0.13 -1.77 16 6 C -0.10 -1.53 5.84 37.16 0.22 -1.31 16 7 S -0.26 -5.24 21.35 -107.50 -2.30 -7.53 16 8 C -0.02 -0.53 5.80 37.16 0.22 -0.31 16 9 C 0.06 1.38 1.36 -155.66 -0.21 1.16 16 10 C -0.48 -13.28 8.40 -34.44 -0.29 -13.57 16 11 H 0.06 1.72 7.82 -52.48 -0.41 1.31 16 12 C 0.07 1.98 5.38 -17.82 -0.10 1.88 16 13 N -0.88 -24.98 12.95 55.43 0.72 -24.26 16 14 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 C -0.20 -4.57 9.96 -26.70 -0.27 -4.83 16 19 C -0.15 -3.54 9.46 -26.70 -0.25 -3.80 16 20 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.37 2.98 9.04 45.56 0.41 3.40 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 1.18 7.82 -51.92 -0.41 0.78 16 28 H 0.08 2.07 8.14 -51.92 -0.42 1.64 16 29 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -29.31 301.07 -8.11 -37.42 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.03 Total: 3.18 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.56 Total: -22.76 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.72 Total: -24.26 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.45 Total: -6.92 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.30 Total: -7.53 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.31 -8.11 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596407327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.929 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds