Wall clock time and date at job start Sun Mar 29 2020 22:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47376 * 2 1 4 4 O 1.42898 * 109.47094 * 239.99687 * 2 1 3 5 5 C 1.53008 * 109.47019 * 119.99704 * 2 1 3 6 6 C 1.52995 * 109.46984 * 184.99622 * 5 2 1 7 7 S 1.81401 * 109.47135 * 180.02562 * 6 5 2 8 8 C 1.81397 * 103.00062 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47309 * 179.97438 * 8 7 6 10 10 C 1.50691 * 115.55016 * 297.18528 * 9 8 7 11 11 H 1.08005 * 120.00374 * 95.13344 * 10 9 8 12 12 C 1.37878 * 119.99851 * 274.86064 * 10 9 8 13 13 N 1.31510 * 120.00256 * 7.00167 * 12 10 9 14 14 Si 1.86806 * 120.00181 * 187.00455 * 12 10 9 15 15 H 1.48501 * 109.47140 * 59.99587 * 14 12 10 16 16 H 1.48495 * 109.47389 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46791 * 299.99924 * 14 12 10 18 18 C 1.52999 * 117.49659 * 82.84993 * 9 8 7 19 19 C 1.52997 * 117.49847 * 151.50792 * 9 8 7 20 20 H 1.09003 * 109.47098 * 299.99854 * 1 2 3 21 21 H 1.09000 * 109.47135 * 59.99659 * 1 2 3 22 22 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 23 23 H 0.96693 * 114.00038 * 300.00237 * 4 2 1 24 24 H 1.09006 * 109.46597 * 65.00406 * 5 2 1 25 25 H 1.08991 * 109.47040 * 305.00180 * 5 2 1 26 26 H 1.09009 * 109.47174 * 60.00541 * 6 5 2 27 27 H 1.09003 * 109.47501 * 300.00498 * 6 5 2 28 28 H 1.09000 * 109.47388 * 60.00490 * 8 7 6 29 29 H 1.08998 * 109.47213 * 300.00071 * 8 7 6 30 30 H 0.96999 * 120.00699 * 181.74528 * 13 12 10 31 31 H 1.08999 * 117.49948 * 215.00628 * 18 9 8 32 32 H 1.09008 * 117.49742 * 0.02600 * 18 9 8 33 33 H 1.08994 * 117.49992 * 359.97438 * 19 9 8 34 34 H 1.08999 * 117.49450 * 144.97578 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3137 7 16 4.1695 -1.4690 2.7945 8 6 5.9655 -1.2339 2.6968 9 6 6.6343 -1.9088 3.8961 10 6 6.2622 -1.3520 5.2461 11 1 5.4723 -1.8123 5.8211 12 6 6.9340 -0.2584 5.7497 13 7 7.8025 0.3831 4.9988 14 14 6.6108 0.3123 7.4989 15 1 6.9449 -0.7815 8.4461 16 1 7.4522 1.4992 7.7958 17 1 5.1777 0.6731 7.6449 18 6 6.9030 -3.4120 3.8016 19 6 8.0648 -2.4194 3.7123 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7210 -1.5952 -1.2328 24 1 1.7516 -1.7715 1.2056 25 1 1.6054 -0.2617 2.1370 26 1 3.8532 0.4370 1.3574 27 1 3.9994 -1.0729 0.4260 28 1 6.1935 -0.1680 2.7065 29 1 6.3404 -1.6772 1.7743 30 1 8.2937 1.1369 5.3612 31 1 6.8106 -3.9982 4.7159 32 1 6.6037 -3.9201 2.8848 33 1 8.5293 -2.2750 2.7370 34 1 8.7369 -2.3522 4.5678 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596407327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:54 Heat of formation + Delta-G solvation = -67.834447 kcal Electronic energy + Delta-G solvation = -13898.643636 eV Core-core repulsion = 11536.022543 eV Total energy + Delta-G solvation = -2362.621093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.85279 -38.41649 -33.99677 -33.89785 -30.78105 -29.42598 -27.39093 -24.83464 -22.93871 -22.37964 -21.06490 -18.15973 -17.33229 -16.93645 -16.82744 -16.59662 -15.71239 -15.35499 -15.13062 -14.80101 -14.13168 -14.00620 -13.74644 -13.29841 -12.97030 -12.87114 -12.79369 -12.59445 -12.34567 -12.12942 -12.03410 -11.70034 -11.54246 -11.06399 -10.79059 -10.64855 -10.43250 -9.84889 -8.39350 -8.10854 -6.20283 0.94146 1.42340 1.42904 1.50261 1.98077 2.44061 3.18492 3.49221 3.52858 3.81263 3.99258 4.07924 4.19997 4.37786 4.40965 4.46490 4.60584 4.62986 4.69171 4.80101 4.93881 4.94176 4.98925 5.11071 5.21571 5.22887 5.31619 5.58407 5.61151 5.77639 6.39122 6.83226 6.87560 7.47262 8.97776 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.006170 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.626525 B = 4536.710297 C = 5053.067447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.110 3.890 3 H 0.092 0.908 4 O -0.580 6.580 5 C -0.123 4.123 6 C -0.080 4.080 7 S -0.283 6.283 8 C -0.015 4.015 9 C 0.025 3.975 10 C -0.496 4.496 11 H 0.048 0.952 12 C 0.028 3.972 13 N -0.908 5.908 14 Si 0.945 3.055 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.181 4.181 19 C -0.153 4.153 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.388 0.612 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 -1.923 -9.106 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.049 3.951 3 H 0.110 0.890 4 O -0.388 6.388 5 C -0.162 4.162 6 C -0.228 4.228 7 S -0.054 6.054 8 C -0.163 4.163 9 C 0.024 3.976 10 C -0.534 4.534 11 H 0.066 0.934 12 C -0.172 4.172 13 N -0.546 5.546 14 Si 0.771 3.229 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.219 4.219 19 C -0.193 4.193 20 H 0.091 0.909 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.238 0.762 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.513 -1.701 -8.446 14.380 hybrid contribution 0.831 0.673 0.306 1.112 sum -10.682 -1.029 -8.140 13.470 Atomic orbital electron populations 1.22423 0.94412 1.03469 1.03202 1.21899 0.94010 0.96118 0.83045 0.89001 1.86551 1.77807 1.30360 1.44050 1.22029 0.91547 1.02729 0.99915 1.23324 1.00321 1.01840 0.97334 1.86733 1.08600 1.74172 1.35917 1.22753 0.91785 1.02220 0.99558 1.18587 0.94762 0.91365 0.92882 1.20495 1.18507 1.13116 1.01234 0.93416 1.25589 0.95048 0.95946 1.00590 1.70092 1.26906 1.20843 1.36736 0.85820 0.78155 0.77719 0.81232 1.19724 1.20928 1.19915 1.22995 1.04214 0.93345 1.01313 1.22509 0.92048 1.04845 0.99872 0.90934 0.91403 0.91189 0.76237 0.90077 0.90361 0.91581 0.90114 0.92999 0.92150 0.93157 0.90381 0.89126 0.90547 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.53 71.98 0.69 -1.87 16 2 C 0.11 2.12 3.59 30.60 0.11 2.23 16 3 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 4 O -0.58 -11.94 12.87 -148.98 -1.92 -13.85 16 5 C -0.12 -2.86 4.90 30.60 0.15 -2.71 16 6 C -0.08 -2.45 5.84 71.98 0.42 -2.03 16 7 S -0.28 -11.43 21.35 -56.49 -1.21 -12.63 16 8 C -0.01 -0.67 5.80 71.98 0.42 -0.26 16 9 C 0.03 1.26 1.36 -52.93 -0.07 1.19 16 10 C -0.50 -27.42 8.40 25.60 0.22 -27.21 16 11 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 12 C 0.03 1.57 5.38 84.66 0.46 2.03 16 13 N -0.91 -52.03 12.95 21.45 0.28 -51.75 16 14 Si 0.94 44.02 29.54 68.60 2.03 46.05 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 18 C -0.18 -7.87 9.96 30.62 0.30 -7.56 16 19 C -0.15 -7.18 9.46 30.62 0.29 -6.89 16 20 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.39 5.18 9.04 -74.06 -0.67 4.51 16 24 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.08 2.40 7.82 -2.39 -0.02 2.38 16 28 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.06 2.51 8.11 -2.39 -0.02 2.49 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 33 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -61.85 301.07 2.54 -59.30 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.39 Total: 15.96 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 2.98 Total: -43.07 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.28 Total: -51.75 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -1.92 Total: -13.85 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -11.43 SS G_CDS: -1.21 Total: -12.63 kcal Total: -61.85 2.54 -59.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596407327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.532 kcal (2) G-P(sol) polarization free energy of solvation -61.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds