Wall clock time and date at job start Sun Mar 29 2020 22:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 112.99685 * 2 1 4 4 S 1.81397 * 109.47166 * 50.33501 * 3 2 1 5 5 C 1.81401 * 102.99785 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47149 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00113 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99923 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47375 * 89.99678 * 12 10 8 14 14 H 1.48508 * 109.47196 * 209.99673 * 12 10 8 15 15 H 1.48504 * 109.47051 * 329.99297 * 12 10 8 16 16 C 1.54029 * 113.81780 * 131.82442 * 2 1 3 17 17 O 1.44442 * 85.42407 * 91.80760 * 16 2 1 18 18 C 1.44176 * 93.38126 * 24.08886 * 17 16 2 19 19 H 1.09004 * 109.47352 * 69.66530 * 1 2 3 20 20 H 1.09002 * 109.47251 * 189.66762 * 1 2 3 21 21 H 1.09002 * 109.47191 * 309.66713 * 1 2 3 22 22 H 1.09004 * 109.46969 * 290.33263 * 3 2 1 23 23 H 1.09000 * 109.46704 * 170.33767 * 3 2 1 24 24 H 1.09002 * 109.47085 * 299.99903 * 5 4 3 25 25 H 1.09001 * 109.47417 * 60.00029 * 5 4 3 26 26 H 1.09002 * 109.47153 * 299.99990 * 6 5 4 27 27 H 1.08998 * 109.47533 * 59.99620 * 6 5 4 28 28 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 29 29 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 30 30 H 0.97008 * 120.00167 * 179.97438 * 11 10 8 31 31 H 1.08997 * 113.86738 * 205.91725 * 16 2 1 32 32 H 1.09005 * 113.86596 * 337.62428 * 16 2 1 33 33 H 1.08999 * 113.86875 * 221.76790 * 18 17 16 34 34 H 1.09000 * 113.98200 * 90.06974 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4085 0.0000 4 16 1.3591 2.3916 1.3165 5 6 2.1841 3.9995 1.1596 6 6 1.6368 4.9590 2.2183 7 6 2.3329 6.3149 2.0864 8 6 1.7935 7.2602 3.1288 9 1 1.0306 6.9269 3.8169 10 6 2.2745 8.5501 3.2047 11 7 1.8033 9.3751 4.1141 12 14 3.5944 9.1263 2.0151 13 1 2.9535 9.7010 0.8051 14 1 4.4333 10.1619 2.6702 15 1 4.4458 7.9740 1.6244 16 6 2.1520 -0.9397 1.0501 17 8 2.1470 -1.9295 -0.0018 18 6 2.1520 -0.9397 -1.0501 19 1 -0.3634 0.3571 -0.9636 20 1 -0.3634 -1.0131 0.1726 21 1 -0.3634 0.6560 0.7911 22 1 1.9410 1.8824 -0.9637 23 1 3.2023 1.3471 0.1725 24 1 3.2571 3.8729 1.3033 25 1 1.9963 4.4089 0.1670 26 1 0.5638 5.0855 2.0741 27 1 1.8241 4.5498 3.2110 28 1 3.4059 6.1881 2.2308 29 1 2.1459 6.7243 1.0937 30 1 2.1420 10.2825 4.1678 31 1 3.1503 -0.6426 1.3714 32 1 1.4868 -1.1742 1.8812 33 1 1.4868 -1.1741 -1.8812 34 1 3.1494 -0.6414 -1.3731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596415977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:42 Heat of formation + Delta-G solvation = -55.770265 kcal Electronic energy + Delta-G solvation = -13612.473840 eV Core-core repulsion = 11250.375889 eV Total energy + Delta-G solvation = -2362.097951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.58497 -36.39618 -34.27762 -34.14119 -29.97041 -28.61694 -27.53635 -26.55741 -24.97365 -22.00490 -19.86212 -18.95635 -17.42619 -17.08626 -16.91326 -16.50203 -16.31230 -16.14917 -15.10461 -14.82629 -14.63763 -14.17914 -13.90024 -13.65054 -13.32299 -13.03293 -12.88703 -12.73145 -12.56504 -11.93053 -11.82111 -11.61817 -11.56855 -11.38621 -11.17662 -10.77575 -10.75049 -10.61923 -8.60505 -8.30060 -6.35403 0.69643 1.36381 1.38732 1.50502 1.69890 2.36120 2.71662 3.05195 3.18366 3.64391 3.92353 4.04761 4.06421 4.14135 4.38243 4.42357 4.55219 4.56323 4.63364 4.76553 4.85089 4.85861 4.89192 4.94931 4.99962 5.12752 5.17459 5.32568 5.44179 5.52215 5.63786 6.26542 6.72628 7.29274 8.87063 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.065893 B = 0.004196 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.826322 B = 6671.120590 C = 6860.827948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 C -0.071 4.071 4 S -0.288 6.288 5 C -0.075 4.075 6 C -0.079 4.079 7 C -0.005 4.005 8 C -0.538 4.538 9 H 0.028 0.972 10 C 0.002 3.998 11 N -0.953 5.953 12 Si 0.956 3.044 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.243 1.243 16 C 0.042 3.958 17 O -0.404 6.404 18 C 0.051 3.949 19 H 0.074 0.926 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.267 0.733 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -19.707 -13.161 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 C -0.220 4.220 4 S -0.060 6.060 5 C -0.223 4.223 6 C -0.118 4.118 7 C -0.044 4.044 8 C -0.576 4.576 9 H 0.046 0.954 10 C -0.195 4.195 11 N -0.594 5.594 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.166 1.166 16 C -0.035 4.035 17 O -0.324 6.324 18 C -0.028 4.028 19 H 0.092 0.908 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.115 0.885 23 H 0.112 0.888 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.004 -20.136 -12.370 23.717 hybrid contribution 1.115 1.367 -0.617 1.869 sum 3.119 -18.770 -12.988 23.037 Atomic orbital electron populations 1.21614 0.91486 1.02364 1.03294 1.23460 0.98066 0.92330 0.97125 1.23512 1.02504 0.96459 0.99482 1.87022 1.58322 1.12013 1.48621 1.23407 1.02172 0.93822 1.02862 1.21028 0.99540 0.94071 0.97134 1.19503 0.96297 0.92788 0.95799 1.21497 1.22241 0.97117 1.16719 0.95394 1.26088 0.99254 0.96682 0.97457 1.70081 1.45403 1.07038 1.36836 0.85581 0.79089 0.78747 0.78747 1.18987 1.21026 1.16593 1.24260 1.01179 0.85841 0.92188 1.89691 1.95920 1.28716 1.18038 1.24277 1.01576 0.84939 0.91960 0.90754 0.91668 0.91858 0.88518 0.88805 0.89557 0.89420 0.93094 0.93141 0.95678 0.95776 0.92436 0.89094 0.88984 0.87524 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.93 71.98 0.64 -1.60 16 2 C -0.11 -1.78 1.06 -51.48 -0.05 -1.84 16 3 C -0.07 -1.26 5.46 71.98 0.39 -0.87 16 4 S -0.29 -7.53 19.93 -56.49 -1.13 -8.66 16 5 C -0.07 -2.19 5.94 71.98 0.43 -1.77 16 6 C -0.08 -3.09 5.16 30.59 0.16 -2.93 16 7 C 0.00 -0.22 4.04 29.84 0.12 -0.10 16 8 C -0.54 -31.40 9.66 25.60 0.25 -31.15 16 9 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 10 C 0.00 0.10 5.47 84.65 0.46 0.57 16 11 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 12 Si 0.96 43.70 27.47 68.60 1.88 45.59 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 16 C 0.04 0.75 8.34 72.29 0.60 1.35 16 17 O -0.40 -8.22 12.39 -148.98 -1.85 -10.06 16 18 C 0.05 0.71 8.37 72.29 0.60 1.31 16 19 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 20 H 0.06 1.09 8.06 -2.39 -0.02 1.07 16 21 H 0.06 1.31 6.52 -2.39 -0.02 1.29 16 22 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.09 1.47 7.98 -2.39 -0.02 1.45 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 29 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 30 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 31 H 0.09 1.47 7.99 -2.39 -0.02 1.46 16 32 H 0.09 1.66 8.10 -2.38 -0.02 1.64 16 33 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -67.15 291.69 3.81 -63.35 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.99 Total: 6.88 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.61 Total: -37.02 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.07 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -1.85 Total: -10.06 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.13 Total: -8.66 kcal Total: -67.15 3.81 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596415977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.576 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds