Wall clock time and date at job start Sun Mar 29 2020 21:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.39717 * 119.20610 * 269.72933 * 10 9 7 12 12 C 1.33468 * 121.86998 * 234.08909 * 11 10 9 13 13 O 1.21278 * 119.80741 * 185.30780 * 12 11 10 14 14 C 1.50587 * 120.50823 * 5.46073 * 12 11 10 15 15 S 1.81810 * 109.41129 * 281.02859 * 14 12 11 16 16 C 1.81818 * 102.18279 * 42.38844 * 15 14 12 17 17 C 1.33847 * 119.21356 * 89.99607 * 10 9 7 18 18 O 1.21282 * 119.69023 * 5.10565 * 17 10 9 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 0.97002 * 119.21635 * 54.19013 * 11 10 9 23 23 H 1.08994 * 109.48579 * 161.04122 * 14 12 11 24 24 H 1.09003 * 109.48979 * 41.01156 * 14 12 11 25 25 H 1.09007 * 109.47754 * 282.41148 * 16 15 14 26 26 H 1.08998 * 109.48291 * 162.37808 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 7 2.6372 -4.1319 -1.2342 12 6 2.5379 -5.4311 -1.5231 13 8 3.0132 -5.8575 -2.5541 14 6 1.8366 -6.3726 -0.5799 15 16 2.9489 -6.7885 0.7967 16 6 3.6955 -5.1773 1.1870 17 6 2.6320 -4.1118 1.1537 18 8 2.1599 -3.7016 2.1928 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 3.0234 -3.5332 -1.8925 23 1 1.5613 -7.2828 -1.1126 24 1 0.9383 -5.8941 -0.1896 25 1 4.4655 -4.9456 0.4510 26 1 4.1418 -5.2145 2.1808 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932876.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:57 Heat of formation + Delta-G solvation = -31.747982 kcal Electronic energy + Delta-G solvation = -14332.271834 eV Core-core repulsion = 11731.842129 eV Total energy + Delta-G solvation = -2600.429705 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50121 -38.89014 -36.09539 -33.63408 -31.16610 -30.57164 -29.57254 -26.51935 -23.16568 -22.01321 -19.70190 -17.84605 -17.77550 -17.44015 -16.39509 -15.89749 -15.12688 -14.98240 -14.08103 -13.95377 -13.81749 -13.42246 -13.18857 -12.77564 -12.04599 -11.83901 -11.38079 -10.88763 -10.80900 -10.61842 -10.25323 -10.14243 -9.79689 -9.15278 -8.62342 -8.11513 -7.93679 -6.63717 -4.39728 1.07585 1.59759 2.15029 2.70160 2.99991 3.31965 3.34847 3.52540 3.57662 4.15678 4.35414 4.68030 4.84722 5.12184 5.15520 5.31674 5.69932 6.40739 6.54191 6.72501 6.88642 7.63086 7.73476 7.96254 8.11637 8.45871 8.54262 9.30305 10.74177 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.008213 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.617102 B = 3408.613803 C = 3702.875252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 1.074 2.926 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.622 4.622 8 H 0.057 0.943 9 C 0.233 3.767 10 N -0.393 5.393 11 N -0.502 5.502 12 C 0.523 3.477 13 O -0.524 6.524 14 C -0.126 4.126 15 S -0.174 6.174 16 C -0.125 4.125 17 C 0.517 3.483 18 O -0.502 6.502 19 H 0.269 0.731 20 H 0.055 0.945 21 H 0.033 0.967 22 H 0.424 0.576 23 H 0.143 0.857 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -9.857 -0.664 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.179 4.179 3 Si 0.901 3.099 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.661 4.661 8 H 0.075 0.925 9 C 0.115 3.885 10 N -0.221 5.221 11 N -0.252 5.252 12 C 0.306 3.694 13 O -0.398 6.398 14 C -0.276 4.276 15 S 0.052 5.948 16 C -0.276 4.276 17 C 0.301 3.699 18 O -0.374 6.374 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.268 0.732 23 H 0.161 0.839 24 H 0.131 0.869 25 H 0.126 0.874 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.785 -9.375 -0.001 10.525 hybrid contribution 0.199 -0.238 -0.843 0.898 sum 4.984 -9.612 -0.844 10.860 Atomic orbital electron populations 1.70832 1.06825 1.30616 1.45113 1.25871 0.96319 1.02725 0.92969 0.83461 0.74908 0.74828 0.76721 1.20453 1.21176 1.21245 1.22178 0.94864 0.91221 1.57807 0.92518 1.19885 0.87431 0.82362 0.98781 1.47649 1.45251 1.34613 0.94566 1.44889 1.62088 1.07518 1.10694 1.20004 0.80160 0.82162 0.87025 1.90811 1.48255 1.74462 1.26313 1.23773 1.01615 1.04220 0.98033 1.87037 1.54225 1.12454 1.41112 1.23897 1.00506 0.94007 1.09145 1.19791 0.83656 0.83259 0.83202 1.90789 1.56777 1.60177 1.29673 0.92109 0.92733 0.94870 0.73171 0.83901 0.86910 0.87360 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 13.65 55.43 0.76 -24.91 15 2 C 0.03 0.73 5.46 -17.82 -0.10 0.63 15 3 Si 1.07 23.91 29.90 -169.99 -5.08 18.83 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.29 -6.20 7.11 56.52 0.40 -5.79 15 6 H -0.29 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.62 -16.29 9.38 -34.44 -0.32 -16.61 15 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 15 9 C 0.23 5.47 4.73 -5.19 -0.02 5.45 15 10 N -0.39 -7.61 2.86 -61.74 -0.18 -7.79 15 11 N -0.50 -8.33 5.52 30.95 0.17 -8.15 15 12 C 0.52 8.17 6.77 -11.62 -0.08 8.09 15 13 O -0.52 -9.27 17.90 5.56 0.10 -9.17 15 14 C -0.13 -1.68 5.86 35.95 0.21 -1.47 15 15 S -0.17 -2.34 22.40 -107.50 -2.41 -4.75 15 16 C -0.12 -1.81 5.86 35.95 0.21 -1.60 15 17 C 0.52 9.86 6.50 -11.46 -0.07 9.78 15 18 O -0.50 -11.47 16.50 5.56 0.09 -11.38 15 19 H 0.27 7.55 7.22 -40.82 -0.29 7.26 15 20 H 0.05 1.41 7.14 -51.93 -0.37 1.04 15 21 H 0.03 0.78 8.00 -51.93 -0.42 0.37 15 22 H 0.42 6.79 8.89 -182.89 -1.63 5.17 15 23 H 0.14 1.59 8.14 -51.93 -0.42 1.16 15 24 H 0.11 1.53 7.87 -51.93 -0.41 1.12 15 25 H 0.11 1.45 7.87 -51.92 -0.41 1.04 15 26 H 0.14 1.82 8.14 -51.93 -0.42 1.40 15 LS Contribution 245.68 15.07 3.70 3.70 Total: -1.00 -30.38 245.68 -6.60 -36.97 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -3.57 Total: 2.35 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.18 Total: 4.28 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.75 Total: -40.85 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.19 Total: -20.54 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.83 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.41 Total: -4.75 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.38 -6.60 -36.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932876.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.226 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds