Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47346 * 2 1 4 4 C 1.53002 * 109.47184 * 119.99986 * 2 1 3 5 5 C 1.50700 * 109.46973 * 295.00022 * 4 2 1 6 6 H 1.08003 * 120.00481 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99987 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46894 * 60.00261 * 9 7 5 11 11 H 1.48501 * 109.47088 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46988 * 300.00316 * 9 7 5 13 13 C 1.52998 * 109.47148 * 240.00317 * 2 1 3 14 14 N 1.46900 * 109.46982 * 178.03350 * 13 2 1 15 15 C 1.46849 * 110.99869 * 183.78437 * 14 13 2 16 16 C 1.53039 * 109.51290 * 185.84227 * 15 14 13 17 17 C 1.53122 * 109.27939 * 300.79764 * 16 15 14 18 18 C 1.53113 * 109.14721 * 57.67290 * 17 16 15 19 19 H 1.09005 * 109.53818 * 62.30319 * 18 17 16 20 20 F 1.39900 * 109.49978 * 182.40084 * 18 17 16 21 21 C 1.46850 * 110.99829 * 307.98662 * 14 13 2 22 22 H 1.09001 * 109.47525 * 185.08144 * 1 2 3 23 23 H 1.08995 * 109.47421 * 305.08204 * 1 2 3 24 24 H 1.09007 * 109.47569 * 65.08445 * 1 2 3 25 25 H 1.08992 * 109.47117 * 54.99965 * 4 2 1 26 26 H 1.09003 * 109.46969 * 175.00457 * 4 2 1 27 27 H 0.97009 * 120.00450 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47550 * 58.02954 * 13 2 1 29 29 H 1.09004 * 109.47097 * 298.02278 * 13 2 1 30 30 H 1.09001 * 109.45994 * 305.84300 * 15 14 13 31 31 H 1.08993 * 109.47008 * 65.82807 * 15 14 13 32 32 H 1.08996 * 109.50441 * 60.75346 * 16 15 14 33 33 H 1.09003 * 109.50544 * 180.86895 * 16 15 14 34 34 H 1.09001 * 109.52759 * 297.76857 * 17 16 15 35 35 H 1.08999 * 109.57257 * 177.60106 * 17 16 15 36 36 H 1.09003 * 109.46528 * 294.18086 * 21 14 13 37 37 H 1.08991 * 109.46192 * 54.14716 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9923 -0.4022 3.7283 8 7 2.6754 -1.5192 3.8512 9 14 1.4987 0.5629 5.2496 10 1 0.0188 0.6705 5.3090 11 1 1.9936 -0.1372 6.4621 12 1 2.0918 1.9229 5.1871 13 6 2.0399 -0.7212 -1.2493 14 7 3.5082 -0.6801 -1.2732 15 6 4.0315 -1.2850 -2.5047 16 6 5.5584 -1.3567 -2.4303 17 6 6.1228 0.0558 -2.2538 18 6 5.5249 0.6813 -0.9907 19 1 5.8189 0.0956 -0.1196 20 9 5.9936 1.9922 -0.8520 21 6 3.9990 0.6939 -1.1065 22 1 -0.3634 -1.0236 0.0910 23 1 -0.3634 0.5906 0.8409 24 1 -0.3634 0.4330 -0.9321 25 1 1.6054 -1.7197 1.2952 26 1 3.1263 -0.7994 1.2056 27 1 2.9227 -1.8422 4.7318 28 1 1.6481 -0.2282 -2.1389 29 1 1.7058 -1.7586 -1.2318 30 1 3.6258 -2.2906 -2.6162 31 1 3.7377 -0.6779 -3.3610 32 1 5.8527 -1.9750 -1.5823 33 1 5.9477 -1.7916 -3.3509 34 1 5.8613 0.6634 -3.1201 35 1 7.2074 0.0062 -2.1575 36 1 3.7052 1.2917 -1.9693 37 1 3.5696 1.1257 -0.2026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602706328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = -71.220493 kcal Electronic energy + Delta-G solvation = -16826.828297 eV Core-core repulsion = 14131.398955 eV Total energy + Delta-G solvation = -2695.429343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.36296 -38.77149 -35.42412 -32.73411 -31.44998 -30.12228 -27.06120 -25.97067 -23.64895 -22.62927 -22.17384 -19.91943 -18.70919 -16.45774 -16.10519 -15.76798 -15.11746 -14.77266 -14.48663 -14.30639 -13.83134 -13.34714 -13.06703 -12.69835 -12.27137 -12.18588 -11.93746 -11.55667 -11.37239 -11.09321 -10.90077 -10.83694 -10.78470 -10.42088 -10.34574 -10.26366 -9.93278 -9.57908 -9.08507 -8.85025 -8.25036 -7.90226 -5.89286 -3.90330 3.38127 3.42700 3.45013 4.08295 4.53497 4.67529 4.82849 4.85254 5.06807 5.28158 5.45540 5.46217 5.60153 5.61043 5.66089 5.81512 5.85823 5.89266 6.02380 6.08246 6.11576 6.20586 6.27975 6.38387 6.41375 6.50917 6.95229 7.02433 7.24779 7.41731 7.49283 7.84076 8.02927 8.17514 8.55176 9.17154 9.72237 11.21545 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.007569 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.353039 B = 3698.368073 C = 4153.891392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 H 0.058 0.942 4 C 0.036 3.964 5 C -0.517 4.517 6 H 0.051 0.949 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.067 3.933 14 N -0.523 5.523 15 C 0.052 3.948 16 C -0.114 4.114 17 C -0.144 4.144 18 C 0.092 3.908 19 H 0.096 0.904 20 F -0.217 7.217 21 C 0.029 3.971 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.028 0.972 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.259 0.741 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 1.214 -12.989 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.555 4.555 6 H 0.070 0.930 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.060 4.060 14 N -0.247 5.247 15 C -0.077 4.077 16 C -0.151 4.151 17 C -0.182 4.182 18 C 0.055 3.945 19 H 0.114 0.886 20 F -0.198 7.198 21 C -0.099 4.099 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.970 0.844 -12.462 13.106 hybrid contribution -0.542 1.030 0.254 1.192 sum 3.428 1.874 -12.208 12.818 Atomic orbital electron populations 1.21677 0.96171 1.01333 0.99689 1.21397 0.94793 0.99219 0.95774 0.92397 1.19056 0.97289 0.94672 0.89094 1.21281 1.34640 1.08218 0.91408 0.93042 1.24979 0.95424 0.95054 0.98861 1.69962 1.38984 1.21130 1.23243 0.86776 0.78787 0.80237 0.82873 1.20431 1.21413 1.20391 1.22243 0.85234 1.01131 0.97428 1.61745 1.09776 1.17817 1.35378 1.22131 0.95108 0.99769 0.90643 1.21515 0.95007 0.96109 1.02514 1.22164 1.00891 0.97427 0.97691 1.21583 0.94393 0.78625 0.99876 0.88608 1.92777 1.89887 1.39814 1.97288 1.22680 0.93806 0.90526 1.02915 0.93388 0.91960 0.95304 0.97000 0.95014 0.93180 0.96382 0.90909 0.90545 0.95432 0.90391 0.91209 0.91527 0.90981 0.94855 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.92 37.15 0.33 -2.11 16 2 C -0.09 -1.88 1.85 -90.62 -0.17 -2.05 16 3 H 0.06 1.19 6.07 -51.93 -0.32 0.87 16 4 C 0.04 0.91 4.30 -27.88 -0.12 0.79 16 5 C -0.52 -14.48 8.47 -34.44 -0.29 -14.77 16 6 H 0.05 1.41 7.06 -52.48 -0.37 1.04 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.00 13.28 55.43 0.74 -26.27 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.07 1.14 4.54 -3.82 -0.02 1.13 16 14 N -0.52 -8.69 4.00 -234.67 -0.94 -9.63 16 15 C 0.05 0.68 5.46 -3.83 -0.02 0.66 16 16 C -0.11 -1.32 6.09 -26.65 -0.16 -1.49 16 17 C -0.14 -1.76 5.74 -26.61 -0.15 -1.91 16 18 C 0.09 1.41 4.04 -26.65 -0.11 1.30 16 19 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 20 F -0.22 -3.62 17.09 2.25 0.04 -3.58 16 21 C 0.03 0.48 4.73 -3.83 -0.02 0.46 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.24 7.11 -51.93 -0.37 0.87 16 24 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.03 0.87 7.47 -51.93 -0.39 0.48 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.53 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 2.00 5.74 -51.93 -0.30 1.70 16 LS Contribution 292.41 15.07 4.41 4.41 Total: -1.00 -29.75 292.41 -7.97 -37.73 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -6.37 Total: -3.12 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.82 Total: -16.42 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.20 Total: -35.90 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.04 Total: -3.58 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.75 -7.97 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602706328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.495 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds