Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47346 * 2 1 4 4 C 1.53002 * 109.47184 * 119.99986 * 2 1 3 5 5 C 1.50700 * 109.46973 * 295.00022 * 4 2 1 6 6 H 1.08003 * 120.00481 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99987 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46894 * 60.00261 * 9 7 5 11 11 H 1.48501 * 109.47088 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46988 * 300.00316 * 9 7 5 13 13 C 1.52998 * 109.47148 * 240.00317 * 2 1 3 14 14 N 1.46900 * 109.46982 * 178.03350 * 13 2 1 15 15 C 1.46849 * 110.99869 * 183.78437 * 14 13 2 16 16 C 1.53039 * 109.51290 * 185.84227 * 15 14 13 17 17 C 1.53122 * 109.27939 * 300.79764 * 16 15 14 18 18 C 1.53113 * 109.14721 * 57.67290 * 17 16 15 19 19 H 1.09005 * 109.53818 * 62.30319 * 18 17 16 20 20 F 1.39900 * 109.49978 * 182.40084 * 18 17 16 21 21 C 1.46850 * 110.99829 * 307.98662 * 14 13 2 22 22 H 1.09001 * 109.47525 * 185.08144 * 1 2 3 23 23 H 1.08995 * 109.47421 * 305.08204 * 1 2 3 24 24 H 1.09007 * 109.47569 * 65.08445 * 1 2 3 25 25 H 1.08992 * 109.47117 * 54.99965 * 4 2 1 26 26 H 1.09003 * 109.46969 * 175.00457 * 4 2 1 27 27 H 0.97009 * 120.00450 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47550 * 58.02954 * 13 2 1 29 29 H 1.09004 * 109.47097 * 298.02278 * 13 2 1 30 30 H 1.09001 * 109.45994 * 305.84300 * 15 14 13 31 31 H 1.08993 * 109.47008 * 65.82807 * 15 14 13 32 32 H 1.08996 * 109.50441 * 60.75346 * 16 15 14 33 33 H 1.09003 * 109.50544 * 180.86895 * 16 15 14 34 34 H 1.09001 * 109.52759 * 297.76857 * 17 16 15 35 35 H 1.08999 * 109.57257 * 177.60106 * 17 16 15 36 36 H 1.09003 * 109.46528 * 294.18086 * 21 14 13 37 37 H 1.08991 * 109.46192 * 54.14716 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9923 -0.4022 3.7283 8 7 2.6754 -1.5192 3.8512 9 14 1.4987 0.5629 5.2496 10 1 0.0188 0.6705 5.3090 11 1 1.9936 -0.1372 6.4621 12 1 2.0918 1.9229 5.1871 13 6 2.0399 -0.7212 -1.2493 14 7 3.5082 -0.6801 -1.2732 15 6 4.0315 -1.2850 -2.5047 16 6 5.5584 -1.3567 -2.4303 17 6 6.1228 0.0558 -2.2538 18 6 5.5249 0.6813 -0.9907 19 1 5.8189 0.0956 -0.1196 20 9 5.9936 1.9922 -0.8520 21 6 3.9990 0.6939 -1.1065 22 1 -0.3634 -1.0236 0.0910 23 1 -0.3634 0.5906 0.8409 24 1 -0.3634 0.4330 -0.9321 25 1 1.6054 -1.7197 1.2952 26 1 3.1263 -0.7994 1.2056 27 1 2.9227 -1.8422 4.7318 28 1 1.6481 -0.2282 -2.1389 29 1 1.7058 -1.7586 -1.2318 30 1 3.6258 -2.2906 -2.6162 31 1 3.7377 -0.6779 -3.3610 32 1 5.8527 -1.9750 -1.5823 33 1 5.9477 -1.7916 -3.3509 34 1 5.8613 0.6634 -3.1201 35 1 7.2074 0.0062 -2.1575 36 1 3.7052 1.2917 -1.9693 37 1 3.5696 1.1257 -0.2026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602706328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = -88.558633 kcal Electronic energy + Delta-G solvation = -16827.580135 eV Core-core repulsion = 14131.398955 eV Total energy + Delta-G solvation = -2696.181181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.65815 -40.03405 -36.96499 -34.60844 -32.99212 -31.28135 -29.05303 -27.30319 -25.32214 -23.99068 -23.61151 -21.04916 -20.32579 -18.47987 -17.50696 -17.04557 -16.61159 -16.24888 -15.90878 -15.64246 -15.31959 -14.81988 -14.27564 -14.25550 -13.73549 -13.54305 -13.42478 -13.26313 -12.91818 -12.75471 -12.65972 -12.24086 -12.17657 -12.00978 -11.83518 -11.55138 -11.38849 -11.24988 -10.91651 -10.77131 -10.46603 -9.15169 -8.11504 -6.19910 1.39536 1.41885 1.49224 2.44154 2.86415 3.21282 3.58066 3.67052 3.73817 3.96697 4.09409 4.21056 4.29983 4.38776 4.53120 4.56704 4.64157 4.72486 4.81786 4.86628 4.88347 4.96545 4.98229 5.05856 5.15936 5.29932 5.36798 5.44887 5.49727 5.65689 5.92794 6.01986 6.14581 6.27734 6.38092 6.98373 7.47176 8.99462 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.007569 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.353039 B = 3698.368073 C = 4153.891392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 H 0.053 0.947 4 C 0.049 3.951 5 C -0.532 4.532 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.074 3.926 14 N -0.547 5.547 15 C 0.049 3.951 16 C -0.109 4.109 17 C -0.135 4.135 18 C 0.088 3.912 19 H 0.075 0.925 20 F -0.226 7.226 21 C 0.035 3.965 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.064 0.936 25 H -0.019 1.019 26 H 0.003 0.997 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 1.794 -14.569 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 H 0.071 0.929 4 C 0.012 3.988 5 C -0.570 4.570 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.572 5.572 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.197 1.197 13 C -0.053 4.053 14 N -0.272 5.272 15 C -0.078 4.078 16 C -0.147 4.147 17 C -0.172 4.172 18 C 0.051 3.949 19 H 0.093 0.907 20 F -0.207 7.207 21 C -0.094 4.094 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.000 1.000 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.768 1.431 -14.056 14.622 hybrid contribution -0.467 0.837 0.740 1.211 sum 3.301 2.269 -13.316 13.905 Atomic orbital electron populations 1.21608 0.94773 1.01145 1.00841 1.21247 0.95957 0.98547 0.94889 0.92887 1.18833 0.95288 0.93433 0.91285 1.21714 1.34252 1.08430 0.92626 0.92715 1.25863 0.95455 0.96061 1.02307 1.70103 1.40263 1.22820 1.23985 0.85694 0.78897 0.78822 0.78789 1.19278 1.21043 1.19660 1.22083 0.85913 1.00754 0.96529 1.61696 1.09529 1.17941 1.38023 1.22257 0.96031 1.00048 0.89451 1.21531 0.93963 0.95600 1.03583 1.22125 1.01567 0.97559 0.95982 1.21654 0.93986 0.78109 1.01108 0.90668 1.92755 1.89931 1.40540 1.97445 1.22523 0.94375 0.90746 1.01722 0.93702 0.93736 0.91697 1.00044 0.97868 0.93169 0.93740 0.91074 0.89813 0.93792 0.91826 0.87869 0.90177 0.89516 0.93478 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.92 71.98 0.64 -3.93 16 2 C -0.09 -3.55 1.85 -10.80 -0.02 -3.57 16 3 H 0.05 2.20 6.07 -2.39 -0.01 2.18 16 4 C 0.05 2.57 4.30 29.85 0.13 2.70 16 5 C -0.53 -30.49 8.47 25.60 0.22 -30.28 16 6 H 0.05 3.03 7.06 -2.91 -0.02 3.01 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -57.77 13.28 21.45 0.28 -57.49 16 9 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.07 2.47 4.54 86.30 0.39 2.86 16 14 N -0.55 -17.83 4.00 -896.37 -3.59 -21.42 16 15 C 0.05 1.19 5.46 86.33 0.47 1.66 16 16 C -0.11 -2.27 6.09 30.65 0.19 -2.08 16 17 C -0.13 -2.99 5.74 30.67 0.18 -2.81 16 18 C 0.09 2.69 4.04 30.64 0.12 2.82 16 19 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 20 F -0.23 -7.49 17.09 44.97 0.77 -6.73 16 21 C 0.03 1.15 4.73 86.33 0.41 1.56 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.04 1.74 7.11 -2.39 -0.02 1.73 16 24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 25 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 26 H 0.00 0.17 7.47 -2.39 -0.02 0.15 16 27 H 0.26 15.27 8.31 -92.70 -0.77 14.49 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 2.74 5.74 -2.39 -0.01 2.73 16 Total: -1.00 -65.28 292.41 3.70 -61.59 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.01 Total: 7.21 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.19 Total: -30.60 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -3.30 Total: -78.91 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.77 Total: -6.73 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.28 3.70 -61.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602706328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.970 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds