Wall clock time and date at job start Sun Mar 29 2020 21:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00512 * 2 1 4 4 H 1.09009 * 109.50427 * 310.08921 * 3 2 1 5 5 C 1.53098 * 109.50953 * 189.99943 * 3 2 1 6 6 N 1.47016 * 109.25650 * 183.17120 * 5 3 2 7 7 C 1.46904 * 110.99833 * 182.39270 * 6 5 3 8 8 C 1.52998 * 109.47022 * 302.41289 * 7 6 5 9 9 C 1.53002 * 109.47094 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47165 * 179.97438 * 9 8 7 11 11 H 1.08007 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00208 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99774 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00420 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47010 * 90.00083 * 14 12 10 16 16 H 1.48497 * 109.47234 * 210.00311 * 14 12 10 17 17 H 1.48506 * 109.46767 * 330.00136 * 14 12 10 18 18 C 1.47015 * 110.75267 * 58.61888 * 6 5 3 19 19 C 1.53095 * 109.25739 * 301.37969 * 18 6 5 20 20 O 1.43015 * 109.54337 * 70.15137 * 3 2 1 21 21 H 1.08994 * 109.47638 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46674 * 300.00241 * 1 2 3 23 23 H 1.09003 * 109.46889 * 59.99562 * 1 2 3 24 24 H 1.09000 * 109.50481 * 63.24093 * 5 3 2 25 25 H 1.08995 * 109.54381 * 303.12923 * 5 3 2 26 26 H 1.09007 * 109.46938 * 62.40707 * 7 6 5 27 27 H 1.08996 * 109.47276 * 182.41083 * 7 6 5 28 28 H 1.08998 * 109.47331 * 300.00067 * 8 7 6 29 29 H 1.09004 * 109.47482 * 60.00389 * 8 7 6 30 30 H 1.08998 * 109.47405 * 300.00412 * 9 8 7 31 31 H 1.08999 * 109.46656 * 60.00408 * 9 8 7 32 32 H 0.96997 * 119.99533 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.50352 * 181.44471 * 18 6 5 34 34 H 1.08995 * 109.50726 * 61.31950 * 18 6 5 35 35 H 1.09002 * 109.50646 * 176.78576 * 19 18 6 36 36 H 1.09003 * 109.50955 * 296.87129 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.5539 1.9070 -0.7861 5 6 3.5166 1.1943 -0.2506 6 7 4.1208 2.5323 -0.1740 7 6 5.5597 2.4776 -0.4652 8 6 6.2422 1.5210 0.5145 9 6 7.7407 1.4635 0.2108 10 6 8.4131 0.5217 1.1762 11 1 7.8299 0.0145 1.9306 12 6 9.7728 0.3075 1.0963 13 7 10.4830 0.9255 0.1780 14 14 10.6063 -0.8605 2.2924 15 1 10.6078 -2.2326 1.7246 16 1 12.0051 -0.4184 2.5225 17 1 9.8683 -0.8588 3.5812 18 6 3.8721 3.1417 1.1406 19 6 2.3624 3.2333 1.3773 20 8 1.7869 1.9286 1.2677 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.6907 0.7724 -1.2404 25 1 3.9651 0.5486 0.5043 26 1 5.7108 2.1225 -1.4846 27 1 5.9898 3.4735 -0.3598 28 1 6.0911 1.8759 1.5339 29 1 5.8121 0.5249 0.4091 30 1 7.8915 1.1083 -0.8086 31 1 8.1711 2.4594 0.3160 32 1 11.4395 0.7745 0.1216 33 1 4.3059 4.1413 1.1663 34 1 4.3259 2.5274 1.9183 35 1 2.1737 3.6318 2.3741 36 1 1.9163 3.8916 0.6317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602896916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:31 Heat of formation + Delta-G solvation = -96.682366 kcal Electronic energy + Delta-G solvation = -16434.286332 eV Core-core repulsion = 13725.380090 eV Total energy + Delta-G solvation = -2708.906242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88907 -37.42652 -36.03512 -33.44181 -31.23736 -30.62418 -28.08804 -26.54203 -25.09221 -23.71105 -22.54235 -21.10381 -19.41877 -17.38570 -16.83335 -16.32754 -16.08716 -15.25076 -14.75900 -14.45681 -14.26796 -14.04716 -13.98662 -13.52591 -13.16222 -12.26550 -12.05477 -11.93536 -11.48285 -11.28814 -11.14372 -11.03485 -10.86768 -10.71655 -10.53670 -10.03413 -9.69259 -9.62302 -9.45109 -9.18927 -8.35076 -8.03255 -6.00124 -4.02644 3.19401 3.32102 3.38144 3.41943 3.76046 4.33382 4.46224 4.86913 4.89231 5.04426 5.19773 5.24148 5.26475 5.33956 5.35558 5.54913 5.56384 5.67605 5.77559 5.85829 5.95309 6.05762 6.23849 6.52967 6.70696 6.87738 6.99694 7.05232 7.22870 7.26168 7.65389 7.79213 7.99048 8.42504 9.04115 9.61635 11.10985 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.005206 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.924596 B = 5376.652402 C = 5664.563306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.260 3.740 4 H 0.060 0.940 5 C 0.029 3.971 6 N -0.536 5.536 7 C 0.054 3.946 8 C -0.147 4.147 9 C 0.025 3.975 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.008 3.992 19 C 0.077 3.923 20 O -0.412 6.412 21 H 0.087 0.913 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 3.785 -0.708 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C 0.164 3.836 4 H 0.078 0.922 5 C -0.100 4.100 6 N -0.261 5.261 7 C -0.073 4.073 8 C -0.186 4.186 9 C -0.012 4.012 10 C -0.559 4.559 11 H 0.071 0.929 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.120 4.120 19 C 0.001 3.999 20 O -0.333 6.333 21 H 0.105 0.895 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.084 3.841 -0.998 18.514 hybrid contribution 0.959 -0.850 1.065 1.666 sum -17.125 2.991 0.067 17.384 Atomic orbital electron populations 1.22754 0.80416 1.02778 1.00426 1.87996 1.20564 1.26132 1.93986 1.22946 0.93184 0.82337 0.85179 0.92225 1.22484 0.92162 0.91718 1.03603 1.62526 1.15224 1.19584 1.28726 1.22362 0.84029 1.00728 1.00147 1.22248 1.00182 0.98108 0.98019 1.19014 0.88180 0.97082 0.96959 1.21253 0.92817 1.25921 1.15907 0.92879 1.25019 0.97565 0.96122 0.95696 1.69964 1.06835 1.42815 1.33901 0.86606 0.78738 0.81221 0.81526 1.20629 1.21185 1.19917 1.22860 0.96568 1.01103 0.91502 1.22595 0.92074 0.83123 1.02127 1.87815 1.77050 1.31823 1.36602 0.89474 0.93161 0.94052 0.89021 0.91942 0.90647 0.90646 0.93299 0.93026 0.96538 0.96595 0.93004 0.89318 0.92769 0.88278 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.89 101.05 1.10 1.43 16 2 O -0.37 -5.25 10.62 -59.03 -0.63 -5.88 16 3 C 0.26 3.64 3.32 37.21 0.12 3.76 16 4 H 0.06 0.76 8.09 -51.92 -0.42 0.34 16 5 C 0.03 0.44 4.78 -3.71 -0.02 0.42 16 6 N -0.54 -8.10 4.94 -234.31 -1.16 -9.25 16 7 C 0.05 0.93 5.38 -3.82 -0.02 0.91 16 8 C -0.15 -3.05 4.44 -26.73 -0.12 -3.17 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 11 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.01 0.11 5.33 -3.71 -0.02 0.09 16 19 C 0.08 0.91 7.01 37.21 0.26 1.17 16 20 O -0.41 -5.93 10.32 -59.03 -0.61 -6.54 16 21 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.51 7.89 -51.93 -0.41 0.10 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.06 1.09 6.40 -51.93 -0.33 0.76 16 26 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.08 1.26 8.11 -51.93 -0.42 0.83 16 28 H 0.05 1.02 6.61 -51.93 -0.34 0.68 16 29 H 0.05 1.09 6.42 -51.93 -0.33 0.76 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 33 H 0.09 1.08 8.12 -51.93 -0.42 0.66 16 34 H 0.05 0.84 6.59 -51.93 -0.34 0.50 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 290.12 15.07 4.37 4.37 Total: -1.00 -31.53 290.12 -7.49 -39.02 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.95 Total: -3.64 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 0.76 Total: -8.64 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.42 Total: -35.67 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.24 Total: -12.42 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.53 -7.49 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.658 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds