Wall clock time and date at job start Sun Mar 29 2020 21:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00512 * 2 1 4 4 H 1.09009 * 109.50427 * 310.08921 * 3 2 1 5 5 C 1.53098 * 109.50953 * 189.99943 * 3 2 1 6 6 N 1.47016 * 109.25650 * 183.17120 * 5 3 2 7 7 C 1.46904 * 110.99833 * 182.39270 * 6 5 3 8 8 C 1.52998 * 109.47022 * 302.41289 * 7 6 5 9 9 C 1.53002 * 109.47094 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47165 * 179.97438 * 9 8 7 11 11 H 1.08007 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00208 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99774 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00420 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47010 * 90.00083 * 14 12 10 16 16 H 1.48497 * 109.47234 * 210.00311 * 14 12 10 17 17 H 1.48506 * 109.46767 * 330.00136 * 14 12 10 18 18 C 1.47015 * 110.75267 * 58.61888 * 6 5 3 19 19 C 1.53095 * 109.25739 * 301.37969 * 18 6 5 20 20 O 1.43015 * 109.54337 * 70.15137 * 3 2 1 21 21 H 1.08994 * 109.47638 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46674 * 300.00241 * 1 2 3 23 23 H 1.09003 * 109.46889 * 59.99562 * 1 2 3 24 24 H 1.09000 * 109.50481 * 63.24093 * 5 3 2 25 25 H 1.08995 * 109.54381 * 303.12923 * 5 3 2 26 26 H 1.09007 * 109.46938 * 62.40707 * 7 6 5 27 27 H 1.08996 * 109.47276 * 182.41083 * 7 6 5 28 28 H 1.08998 * 109.47331 * 300.00067 * 8 7 6 29 29 H 1.09004 * 109.47482 * 60.00389 * 8 7 6 30 30 H 1.08998 * 109.47405 * 300.00412 * 9 8 7 31 31 H 1.08999 * 109.46656 * 60.00408 * 9 8 7 32 32 H 0.96997 * 119.99533 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.50352 * 181.44471 * 18 6 5 34 34 H 1.08995 * 109.50726 * 61.31950 * 18 6 5 35 35 H 1.09002 * 109.50646 * 176.78576 * 19 18 6 36 36 H 1.09003 * 109.50955 * 296.87129 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.5539 1.9070 -0.7861 5 6 3.5166 1.1943 -0.2506 6 7 4.1208 2.5323 -0.1740 7 6 5.5597 2.4776 -0.4652 8 6 6.2422 1.5210 0.5145 9 6 7.7407 1.4635 0.2108 10 6 8.4131 0.5217 1.1762 11 1 7.8299 0.0145 1.9306 12 6 9.7728 0.3075 1.0963 13 7 10.4830 0.9255 0.1780 14 14 10.6063 -0.8605 2.2924 15 1 10.6078 -2.2326 1.7246 16 1 12.0051 -0.4184 2.5225 17 1 9.8683 -0.8588 3.5812 18 6 3.8721 3.1417 1.1406 19 6 2.3624 3.2333 1.3773 20 8 1.7869 1.9286 1.2677 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.6907 0.7724 -1.2404 25 1 3.9651 0.5486 0.5043 26 1 5.7108 2.1225 -1.4846 27 1 5.9898 3.4735 -0.3598 28 1 6.0911 1.8759 1.5339 29 1 5.8121 0.5249 0.4091 30 1 7.8915 1.1083 -0.8086 31 1 8.1711 2.4594 0.3160 32 1 11.4395 0.7745 0.1216 33 1 4.3059 4.1413 1.1663 34 1 4.3259 2.5274 1.9183 35 1 2.1737 3.6318 2.3741 36 1 1.9163 3.8916 0.6317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602896916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:31 Heat of formation + Delta-G solvation = -119.100694 kcal Electronic energy + Delta-G solvation = -16435.258464 eV Core-core repulsion = 13725.380090 eV Total energy + Delta-G solvation = -2709.878373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00057 -38.55390 -37.24473 -35.44569 -33.09660 -31.67589 -29.55387 -27.68576 -26.64728 -24.82835 -24.07051 -22.75487 -20.78188 -18.66773 -18.25392 -17.83816 -17.25118 -16.60413 -16.38939 -15.84534 -15.56304 -15.34575 -15.03643 -14.79028 -14.41796 -14.17039 -13.72524 -13.14607 -12.95349 -12.72818 -12.63202 -12.53274 -12.33918 -12.26766 -12.03665 -11.43972 -11.40708 -11.32513 -10.96691 -10.72184 -10.58120 -9.39484 -8.22982 -6.34747 1.36951 1.38079 1.49259 2.20673 2.37998 2.65931 3.09339 3.27058 3.81326 3.81932 3.97132 4.07527 4.20254 4.31652 4.39434 4.48274 4.50503 4.56385 4.60931 4.69077 4.79626 4.82827 4.89767 4.92970 5.09211 5.19346 5.45793 5.64926 5.80358 5.84463 5.88291 5.93344 6.19970 6.22176 6.81085 7.34559 8.88048 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.005206 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.924596 B = 5376.652402 C = 5664.563306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.264 3.736 4 H 0.080 0.920 5 C 0.028 3.972 6 N -0.525 5.525 7 C 0.065 3.935 8 C -0.130 4.130 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.051 0.949 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.962 3.038 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.267 1.267 18 C 0.004 3.996 19 C 0.078 3.922 20 O -0.428 6.428 21 H 0.103 0.897 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.043 0.957 30 H -0.006 1.006 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.106 0.894 34 H 0.031 0.969 35 H 0.123 0.877 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.222 3.981 -0.224 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C 0.168 3.832 4 H 0.097 0.903 5 C -0.101 4.101 6 N -0.250 5.250 7 C -0.063 4.063 8 C -0.168 4.168 9 C -0.008 4.008 10 C -0.585 4.585 11 H 0.069 0.931 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.787 3.213 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.124 4.124 19 C 0.002 3.998 20 O -0.349 6.349 21 H 0.122 0.878 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.050 0.950 35 H 0.141 0.859 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.301 4.043 -0.512 19.727 hybrid contribution 1.303 -0.900 0.905 1.824 sum -17.998 3.143 0.394 18.274 Atomic orbital electron populations 1.22975 0.78366 1.04230 1.01254 1.87955 1.22836 1.26434 1.94128 1.22899 0.92001 0.82702 0.85645 0.90316 1.22504 0.93583 0.91197 1.02823 1.62565 1.13292 1.19369 1.29725 1.22189 0.85206 0.99920 0.98975 1.22022 0.96935 0.98900 0.98990 1.18907 0.91417 0.95275 0.95226 1.21664 0.93619 1.26697 1.16540 0.93060 1.25934 0.98268 0.97791 0.97508 1.70079 1.07326 1.44128 1.35470 0.85490 0.77713 0.78931 0.79187 1.19747 1.20285 1.19117 1.23008 0.98365 1.01297 0.89780 1.22790 0.90274 0.82477 1.04229 1.87806 1.77159 1.33035 1.36933 0.87831 0.93281 0.92210 0.88776 0.94762 0.90561 0.89859 0.93568 0.93835 0.98720 0.98476 0.92632 0.87585 0.95049 0.85917 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.89 113.37 1.23 1.74 16 2 O -0.39 -10.82 10.62 -126.23 -1.34 -12.16 16 3 C 0.26 7.00 3.32 72.01 0.24 7.24 16 4 H 0.08 1.80 8.09 -2.38 -0.02 1.78 16 5 C 0.03 0.83 4.78 86.31 0.41 1.24 16 6 N -0.53 -15.30 4.94 -895.22 -4.42 -19.72 16 7 C 0.06 2.19 5.38 86.30 0.46 2.66 16 8 C -0.13 -5.49 4.44 30.59 0.14 -5.35 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.55 -32.11 9.11 25.60 0.23 -31.87 16 11 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 12 C 0.00 0.18 5.46 84.65 0.46 0.64 16 13 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 14 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 C 0.00 0.09 5.33 86.31 0.46 0.55 16 19 C 0.08 1.64 7.01 72.01 0.50 2.15 16 20 O -0.43 -11.57 10.32 -126.23 -1.30 -12.87 16 21 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.05 0.91 7.89 -2.38 -0.02 0.89 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.03 1.22 6.40 -2.39 -0.02 1.21 16 26 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 27 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 28 H 0.05 1.96 6.61 -2.39 -0.02 1.94 16 29 H 0.04 1.90 6.42 -2.39 -0.02 1.88 16 30 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.11 2.36 8.12 -2.39 -0.02 2.34 16 34 H 0.03 0.96 6.59 -2.39 -0.02 0.94 16 35 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.67 290.12 0.58 -67.09 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.03 Total: 6.53 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.29 Total: -19.28 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -4.13 Total: -76.48 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -2.64 Total: -25.03 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.67 0.58 -67.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.012 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds