Wall clock time and date at job start Sun Mar 29 2020 21:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99661 * 2 1 4 4 H 1.08993 * 109.54266 * 55.11246 * 3 2 1 5 5 C 1.53103 * 109.50129 * 175.21421 * 3 2 1 6 6 N 1.47017 * 109.25606 * 176.78391 * 5 3 2 7 7 C 1.46900 * 110.99765 * 177.61039 * 6 5 3 8 8 C 1.53004 * 109.47328 * 57.59133 * 7 6 5 9 9 C 1.53000 * 109.47079 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46835 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00440 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99755 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99834 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00039 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46682 * 90.00943 * 14 12 10 16 16 H 1.48500 * 109.47251 * 210.00332 * 14 12 10 17 17 H 1.48491 * 109.47227 * 330.00827 * 14 12 10 18 18 C 1.47014 * 110.75303 * 301.38548 * 6 5 3 19 19 C 1.53096 * 109.25675 * 58.61803 * 18 6 5 20 20 O 1.43010 * 109.51144 * 294.99582 * 3 2 1 21 21 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47350 * 300.00257 * 1 2 3 23 23 H 1.09005 * 109.46868 * 60.00113 * 1 2 3 24 24 H 1.09006 * 109.50645 * 56.84970 * 5 3 2 25 25 H 1.08995 * 109.54475 * 296.74105 * 5 3 2 26 26 H 1.08995 * 109.47079 * 177.59271 * 7 6 5 27 27 H 1.09004 * 109.47353 * 297.58723 * 7 6 5 28 28 H 1.09005 * 109.46455 * 299.99827 * 8 7 6 29 29 H 1.08994 * 109.47193 * 59.99701 * 8 7 6 30 30 H 1.09005 * 109.46695 * 299.99480 * 9 8 7 31 31 H 1.08994 * 109.47562 * 59.99670 * 9 8 7 32 32 H 0.97004 * 119.99799 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.50706 * 298.68119 * 18 6 5 34 34 H 1.09000 * 109.50503 * 178.54907 * 18 6 5 35 35 H 1.08997 * 109.50375 * 183.21864 * 19 18 6 36 36 H 1.08994 * 109.50924 * 63.08237 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.6218 1.8775 0.8425 5 6 3.5319 1.1876 0.1204 6 7 4.1298 2.5284 0.0423 7 6 5.5878 2.4652 0.2108 8 6 6.1851 1.5457 -0.8563 9 6 7.7036 1.4794 -0.6805 10 6 8.2919 0.5743 -1.7319 11 1 7.6473 0.0939 -2.4531 12 6 9.6531 0.3585 -1.7724 13 7 10.1665 -0.4319 -2.6897 14 14 10.7680 1.1887 -0.5245 15 1 10.9156 0.3139 0.6664 16 1 12.1017 1.4258 -1.1328 17 1 10.1729 2.4861 -0.1150 18 6 3.7737 3.1846 -1.2241 19 6 2.2496 3.2825 -1.3309 20 8 1.6841 1.9735 -1.2217 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.9146 0.5704 -0.6926 25 1 3.7877 0.7301 1.0761 26 1 6.0093 3.4649 0.1062 27 1 5.8226 2.0737 1.2006 28 1 5.7636 0.5459 -0.7516 29 1 5.9504 1.9372 -1.8461 30 1 8.1253 2.4791 -0.7849 31 1 7.9380 1.0877 0.3093 32 1 11.1243 -0.5834 -2.7185 33 1 4.1603 2.5995 -2.0585 34 1 4.2054 4.1852 -1.2494 35 1 1.9794 3.7166 -2.2935 36 1 1.8681 3.9120 -0.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602896917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:33 Heat of formation + Delta-G solvation = -93.084032 kcal Electronic energy + Delta-G solvation = -16473.905975 eV Core-core repulsion = 13765.155768 eV Total energy + Delta-G solvation = -2708.750206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94182 -37.46805 -36.09218 -33.45598 -31.47201 -30.66427 -28.37172 -26.64703 -25.22282 -23.74729 -22.46510 -20.91718 -19.50527 -17.43034 -16.89003 -16.63784 -16.20784 -15.31052 -14.77120 -14.45791 -14.30286 -14.06792 -13.94423 -13.53779 -13.24557 -12.65776 -12.12108 -12.01469 -11.63890 -11.39478 -11.25731 -11.16906 -11.07126 -10.69055 -10.10304 -9.92517 -9.85515 -9.70483 -9.65919 -9.23467 -8.54038 -8.11308 -6.04269 -4.02574 3.18846 3.30383 3.37623 3.40945 3.69729 4.27682 4.44840 4.83860 4.86207 5.00375 5.16969 5.20732 5.23785 5.29407 5.33478 5.50638 5.56459 5.59067 5.71495 5.72884 5.89981 5.97843 6.10105 6.39473 6.52093 6.81810 6.87491 6.97166 7.12197 7.16573 7.25997 7.39972 7.78821 8.54103 9.00538 9.57975 11.09331 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041123 B = 0.005313 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.716818 B = 5269.030899 C = 5491.975722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.260 3.740 4 H 0.060 0.940 5 C 0.028 3.972 6 N -0.535 5.535 7 C 0.052 3.948 8 C -0.140 4.140 9 C -0.010 4.010 10 C -0.521 4.521 11 H 0.070 0.930 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.882 3.118 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.007 3.993 19 C 0.078 3.922 20 O -0.411 6.411 21 H 0.087 0.913 22 H 0.040 0.960 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 7.162 6.547 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C 0.164 3.836 4 H 0.078 0.922 5 C -0.101 4.101 6 N -0.260 5.260 7 C -0.075 4.075 8 C -0.179 4.179 9 C -0.048 4.048 10 C -0.559 4.559 11 H 0.088 0.912 12 C -0.136 4.136 13 N -0.543 5.543 14 Si 0.709 3.291 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.121 4.121 19 C 0.001 3.999 20 O -0.333 6.333 21 H 0.105 0.895 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.537 7.114 6.739 20.089 hybrid contribution 1.064 0.120 0.045 1.072 sum -16.473 7.234 6.784 19.228 Atomic orbital electron populations 1.22725 0.80342 1.02748 1.00487 1.88008 1.20676 1.25938 1.94117 1.22945 0.92494 0.81936 0.86207 0.92225 1.22500 0.92137 0.91571 1.03869 1.62508 1.12084 1.18057 1.33333 1.22384 0.84297 1.00772 1.00072 1.22092 0.98995 0.98872 0.97892 1.19489 0.91235 0.97001 0.97029 1.21152 0.92808 1.27505 1.14446 0.91233 1.25053 0.98196 0.94803 0.95512 1.69928 1.12443 1.37518 1.34437 0.86751 0.79974 0.80642 0.81742 1.20281 1.21402 1.19023 1.22879 0.96291 1.00752 0.92192 1.22591 0.92043 0.83005 1.02253 1.87818 1.74095 1.30452 1.40898 0.89492 0.94117 0.93033 0.91808 0.88986 0.90658 0.90656 0.92427 0.92672 0.96647 0.97013 0.92751 0.92628 0.89307 0.88206 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.88 101.05 1.10 1.44 16 2 O -0.37 -5.21 10.63 -59.03 -0.63 -5.84 16 3 C 0.26 3.57 3.36 37.21 0.13 3.69 16 4 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 5 C 0.03 0.41 4.78 -3.71 -0.02 0.39 16 6 N -0.53 -7.72 4.94 -234.30 -1.16 -8.87 16 7 C 0.05 0.83 5.38 -3.82 -0.02 0.81 16 8 C -0.14 -2.77 4.44 -26.73 -0.12 -2.89 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 11 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 14 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 18 C 0.01 0.09 5.33 -3.71 -0.02 0.07 16 19 C 0.08 0.88 7.01 37.21 0.26 1.14 16 20 O -0.41 -5.80 10.09 -59.03 -0.60 -6.39 16 21 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.53 7.75 -51.93 -0.40 0.13 16 24 H 0.06 1.09 6.41 -51.93 -0.33 0.76 16 25 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.19 6.42 -51.93 -0.33 0.85 16 29 H 0.05 1.12 6.61 -51.93 -0.34 0.78 16 30 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 31 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.06 0.84 6.59 -51.93 -0.34 0.50 16 34 H 0.09 1.03 8.12 -51.93 -0.42 0.60 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 286.24 15.07 4.31 4.31 Total: -1.00 -32.15 286.24 -7.10 -39.25 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.91 Total: -2.80 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 0.77 Total: -9.33 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.38 Total: -36.44 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.22 Total: -12.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.15 -7.10 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.833 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds