Wall clock time and date at job start Sun Mar 29 2020 21:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99661 * 2 1 4 4 H 1.08993 * 109.54266 * 55.11246 * 3 2 1 5 5 C 1.53103 * 109.50129 * 175.21421 * 3 2 1 6 6 N 1.47017 * 109.25606 * 176.78391 * 5 3 2 7 7 C 1.46900 * 110.99765 * 177.61039 * 6 5 3 8 8 C 1.53004 * 109.47328 * 57.59133 * 7 6 5 9 9 C 1.53000 * 109.47079 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46835 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00440 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99755 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99834 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00039 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46682 * 90.00943 * 14 12 10 16 16 H 1.48500 * 109.47251 * 210.00332 * 14 12 10 17 17 H 1.48491 * 109.47227 * 330.00827 * 14 12 10 18 18 C 1.47014 * 110.75303 * 301.38548 * 6 5 3 19 19 C 1.53096 * 109.25675 * 58.61803 * 18 6 5 20 20 O 1.43010 * 109.51144 * 294.99582 * 3 2 1 21 21 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47350 * 300.00257 * 1 2 3 23 23 H 1.09005 * 109.46868 * 60.00113 * 1 2 3 24 24 H 1.09006 * 109.50645 * 56.84970 * 5 3 2 25 25 H 1.08995 * 109.54475 * 296.74105 * 5 3 2 26 26 H 1.08995 * 109.47079 * 177.59271 * 7 6 5 27 27 H 1.09004 * 109.47353 * 297.58723 * 7 6 5 28 28 H 1.09005 * 109.46455 * 299.99827 * 8 7 6 29 29 H 1.08994 * 109.47193 * 59.99701 * 8 7 6 30 30 H 1.09005 * 109.46695 * 299.99480 * 9 8 7 31 31 H 1.08994 * 109.47562 * 59.99670 * 9 8 7 32 32 H 0.97004 * 119.99799 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.50706 * 298.68119 * 18 6 5 34 34 H 1.09000 * 109.50503 * 178.54907 * 18 6 5 35 35 H 1.08997 * 109.50375 * 183.21864 * 19 18 6 36 36 H 1.08994 * 109.50924 * 63.08237 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.6218 1.8775 0.8425 5 6 3.5319 1.1876 0.1204 6 7 4.1298 2.5284 0.0423 7 6 5.5878 2.4652 0.2108 8 6 6.1851 1.5457 -0.8563 9 6 7.7036 1.4794 -0.6805 10 6 8.2919 0.5743 -1.7319 11 1 7.6473 0.0939 -2.4531 12 6 9.6531 0.3585 -1.7724 13 7 10.1665 -0.4319 -2.6897 14 14 10.7680 1.1887 -0.5245 15 1 10.9156 0.3139 0.6664 16 1 12.1017 1.4258 -1.1328 17 1 10.1729 2.4861 -0.1150 18 6 3.7737 3.1846 -1.2241 19 6 2.2496 3.2825 -1.3309 20 8 1.6841 1.9735 -1.2217 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.9146 0.5704 -0.6926 25 1 3.7877 0.7301 1.0761 26 1 6.0093 3.4649 0.1062 27 1 5.8226 2.0737 1.2006 28 1 5.7636 0.5459 -0.7516 29 1 5.9504 1.9372 -1.8461 30 1 8.1253 2.4791 -0.7849 31 1 7.9380 1.0877 0.3093 32 1 11.1243 -0.5834 -2.7185 33 1 4.1603 2.5995 -2.0585 34 1 4.2054 4.1852 -1.2494 35 1 1.9794 3.7166 -2.2935 36 1 1.8681 3.9120 -0.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602896917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:33 Heat of formation + Delta-G solvation = -117.052917 kcal Electronic energy + Delta-G solvation = -16474.945344 eV Core-core repulsion = 13765.155768 eV Total energy + Delta-G solvation = -2709.789575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01262 -38.56561 -37.25331 -35.39897 -33.37163 -31.68006 -29.81704 -27.77410 -26.64141 -24.81270 -23.86782 -22.59727 -20.81722 -18.97955 -18.35412 -17.86750 -17.25757 -16.48153 -16.34615 -15.88075 -15.62658 -15.29180 -15.04341 -14.79275 -14.64999 -14.39226 -13.75661 -13.27544 -12.96347 -12.88346 -12.53678 -12.34980 -12.27860 -12.17756 -11.82085 -11.64373 -11.44877 -11.33476 -10.98775 -10.78692 -10.70696 -9.40035 -8.31913 -6.37499 1.35673 1.38023 1.50390 2.22499 2.35193 2.64905 3.03437 3.25376 3.80672 3.82374 3.95825 4.07172 4.19480 4.26655 4.36197 4.47575 4.48944 4.56312 4.58500 4.68802 4.79048 4.82030 4.86913 4.90571 5.02340 5.06304 5.44711 5.49805 5.63181 5.82441 5.87393 5.94604 6.17791 6.25357 6.70625 7.27503 8.85478 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041123 B = 0.005313 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.716818 B = 5269.030899 C = 5491.975722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.263 3.737 4 H 0.081 0.919 5 C 0.027 3.973 6 N -0.523 5.523 7 C 0.062 3.938 8 C -0.129 4.129 9 C -0.006 4.006 10 C -0.538 4.538 11 H 0.020 0.980 12 C 0.000 4.000 13 N -0.955 5.955 14 Si 0.959 3.041 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.240 1.240 18 C 0.003 3.997 19 C 0.077 3.923 20 O -0.430 6.430 21 H 0.102 0.898 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.026 0.974 31 H 0.022 0.978 32 H 0.267 0.733 33 H 0.028 0.972 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.096 9.335 8.741 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.315 6.315 3 C 0.167 3.833 4 H 0.098 0.902 5 C -0.102 4.102 6 N -0.248 5.248 7 C -0.066 4.066 8 C -0.168 4.168 9 C -0.044 4.044 10 C -0.576 4.576 11 H 0.039 0.961 12 C -0.196 4.196 13 N -0.596 5.596 14 Si 0.781 3.219 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.163 1.163 18 C -0.125 4.125 19 C 0.001 3.999 20 O -0.351 6.351 21 H 0.120 0.880 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.179 9.296 8.932 22.287 hybrid contribution 1.178 -0.632 -0.749 1.532 sum -17.002 8.665 8.184 20.763 Atomic orbital electron populations 1.22932 0.78404 1.04116 1.01257 1.87967 1.22853 1.26451 1.94265 1.22942 0.91424 0.82173 0.86760 0.90159 1.22516 0.93523 0.91332 1.02811 1.62578 1.10787 1.17517 1.33883 1.22285 0.85127 1.00416 0.98741 1.21949 0.96697 0.99158 0.99035 1.19439 0.93471 0.96009 0.95488 1.21527 0.92865 1.28281 1.14971 0.96138 1.26144 1.00086 0.95461 0.97928 1.70099 1.13136 1.39460 1.36872 0.85535 0.77290 0.80449 0.78613 1.19051 1.20967 1.16335 1.23014 0.97937 1.01075 0.90470 1.22796 0.90454 0.82285 1.04327 1.87807 1.74276 1.31736 1.41324 0.87951 0.92141 0.93391 0.95169 0.88442 0.88980 0.89626 0.94226 0.93947 0.95555 0.95932 0.92451 0.95413 0.87199 0.86129 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.88 113.37 1.23 1.77 16 2 O -0.40 -10.92 10.63 -126.22 -1.34 -12.26 16 3 C 0.26 6.87 3.36 72.02 0.24 7.12 16 4 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.03 0.78 4.78 86.32 0.41 1.20 16 6 N -0.52 -14.18 4.94 -895.18 -4.42 -18.60 16 7 C 0.06 1.85 5.38 86.30 0.46 2.31 16 8 C -0.13 -5.17 4.44 30.60 0.14 -5.03 16 9 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 10 C -0.54 -32.22 9.66 25.60 0.25 -31.97 16 11 H 0.02 1.37 7.99 -2.91 -0.02 1.34 16 12 C 0.00 0.01 5.47 84.65 0.46 0.47 16 13 N -0.96 -61.56 13.96 21.45 0.30 -61.26 16 14 Si 0.96 44.51 27.47 68.60 1.88 46.40 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 18 C 0.00 0.08 5.33 86.31 0.46 0.54 16 19 C 0.08 1.58 7.01 72.01 0.50 2.08 16 20 O -0.43 -11.56 10.09 -126.22 -1.27 -12.83 16 21 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.93 7.75 -2.38 -0.02 0.91 16 24 H 0.03 1.08 6.41 -2.38 -0.02 1.06 16 25 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.09 2.49 8.11 -2.39 -0.02 2.47 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.04 1.70 6.42 -2.38 -0.02 1.68 16 29 H 0.04 1.77 6.61 -2.39 -0.02 1.75 16 30 H 0.03 1.18 7.20 -2.38 -0.02 1.17 16 31 H 0.02 1.01 7.57 -2.39 -0.02 1.00 16 32 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 33 H 0.03 0.84 6.59 -2.39 -0.02 0.83 16 34 H 0.11 2.24 8.12 -2.39 -0.02 2.22 16 35 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -71.39 286.24 0.41 -70.98 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.98 Total: 9.25 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.28 Total: -21.68 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -4.12 Total: -79.86 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -2.62 Total: -25.09 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -71.39 0.41 -70.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.077 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds