Wall clock time and date at job start Sun Mar 29 2020 21:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47716 * 2 1 4 4 C 1.53001 * 109.46774 * 120.00234 * 2 1 3 5 5 C 1.50697 * 109.47225 * 183.57186 * 4 2 1 6 6 H 1.07997 * 119.99946 * 5.08563 * 5 4 2 7 7 C 1.37874 * 120.00157 * 185.07985 * 5 4 2 8 8 N 1.31518 * 120.00245 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00235 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47362 * 59.99979 * 9 7 5 11 11 H 1.48499 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47213 * 300.00215 * 9 7 5 13 13 N 1.46902 * 109.46993 * 239.99314 * 2 1 3 14 14 C 1.46840 * 111.00318 * 308.75184 * 13 2 1 15 15 C 1.53038 * 109.51287 * 185.83189 * 14 13 2 16 16 C 1.53119 * 109.28157 * 300.82561 * 15 14 13 17 17 C 1.53001 * 109.52689 * 177.55789 * 16 15 14 18 18 F 1.39901 * 109.52551 * 297.75248 * 16 15 14 19 19 C 1.53124 * 109.15845 * 57.65246 * 16 15 14 20 20 C 1.46827 * 110.98043 * 72.97147 * 13 2 1 21 21 H 1.08996 * 109.47716 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47606 * 300.00647 * 1 2 3 23 23 H 1.09004 * 109.46664 * 60.00016 * 1 2 3 24 24 H 1.09003 * 109.46891 * 303.57137 * 4 2 1 25 25 H 1.09002 * 109.47321 * 63.57046 * 4 2 1 26 26 H 0.97001 * 120.00122 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.46171 * 65.82282 * 14 13 2 28 28 H 1.08994 * 109.46535 * 305.84298 * 14 13 2 29 29 H 1.08998 * 109.50459 * 60.76870 * 15 14 13 30 30 H 1.09005 * 109.50670 * 180.84639 * 15 14 13 31 31 H 1.09000 * 109.46591 * 59.99910 * 17 16 15 32 32 H 1.08998 * 109.47151 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.47126 * 300.00647 * 17 16 15 34 34 H 1.09002 * 109.49926 * 62.28969 * 19 16 15 35 35 H 1.09002 * 109.50403 * 182.36436 * 19 16 15 36 36 H 1.08995 * 109.46893 * 54.13800 * 20 13 2 37 37 H 1.09005 * 109.45612 * 294.15739 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5442 -0.6452 1.2944 6 1 4.0779 -0.0646 0.5565 7 6 4.2393 -1.3166 2.2778 8 7 3.5895 -2.0239 3.1762 9 14 6.1040 -1.2217 2.3342 10 1 6.5229 0.1932 2.5013 11 1 6.6063 -2.0254 3.4775 12 1 6.6655 -1.7578 1.0683 13 7 2.0196 -0.6927 -1.1994 14 6 1.3860 -2.0096 -1.3421 15 6 2.0233 -2.7591 -2.5144 16 6 1.8402 -1.9421 -3.7963 17 6 2.5282 -2.6570 -4.9610 18 9 0.4756 -1.8036 -4.0717 19 6 2.4663 -0.5580 -3.6038 20 6 1.8163 0.1277 -2.4000 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.6251 -0.2458 2.1381 25 1 1.7297 -1.7658 1.2178 26 1 4.0785 -2.4966 3.8678 27 1 0.3199 -1.8813 -1.5295 28 1 1.5273 -2.5819 -0.4253 29 1 3.0868 -2.8999 -2.3213 30 1 1.5427 -3.7307 -2.6296 31 1 2.0857 -3.6442 -5.0936 32 1 2.3970 -2.0749 -5.8732 33 1 3.5917 -2.7615 -4.7460 34 1 3.5368 -0.6642 -3.4279 35 1 2.3024 0.0432 -4.4982 36 1 2.2699 1.1076 -2.2516 37 1 0.7481 0.2458 -2.5825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602992783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:19 Heat of formation + Delta-G solvation = -64.341067 kcal Electronic energy + Delta-G solvation = -17170.907096 eV Core-core repulsion = 14475.776067 eV Total energy + Delta-G solvation = -2695.131028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.47140 -38.58915 -34.90776 -32.59794 -30.83026 -30.44313 -27.36976 -26.97329 -23.29238 -23.11982 -21.93544 -19.75958 -18.61462 -16.14763 -15.91136 -15.26794 -15.18572 -14.83610 -14.55128 -14.07016 -13.68245 -13.04083 -12.68124 -12.45016 -12.38445 -12.06221 -11.90030 -11.71257 -11.52415 -11.47270 -11.16147 -10.93775 -10.82232 -10.56565 -10.39819 -10.09810 -9.92082 -9.78010 -9.13141 -8.94934 -8.23660 -7.41305 -5.86639 -3.84142 3.41255 3.45147 3.48406 4.50268 4.57904 4.65124 4.72235 4.88215 4.94299 5.44092 5.49632 5.57854 5.60958 5.68659 5.74176 5.82231 5.86518 5.96685 6.01597 6.05445 6.08164 6.10491 6.25662 6.38933 6.49135 6.55003 6.67480 6.75453 7.03236 7.56446 7.70811 7.94486 8.06158 8.14641 8.60499 9.20795 9.76879 11.25376 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.029272 B = 0.008100 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.300554 B = 3456.012912 C = 3904.304867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.488 4.488 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.509 5.509 14 C 0.055 3.945 15 C -0.133 4.133 16 C 0.113 3.887 17 C -0.169 4.169 18 F -0.215 7.215 19 C -0.132 4.132 20 C 0.051 3.949 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.039 0.961 24 H 0.015 0.985 25 H 0.022 0.978 26 H 0.257 0.743 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 0.477 -13.389 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.232 5.232 14 C -0.073 4.073 15 C -0.171 4.171 16 C 0.095 3.905 17 C -0.227 4.227 18 F -0.196 7.196 19 C -0.170 4.170 20 C -0.077 4.077 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.111 0.299 -13.184 13.550 hybrid contribution 0.083 0.104 -0.030 0.136 sum -3.028 0.403 -13.214 13.563 Atomic orbital electron populations 1.22519 0.99718 1.01425 1.00585 1.21903 0.90100 0.98156 0.91897 0.91391 1.19189 0.96307 0.95531 0.89656 1.21105 0.91586 1.28883 1.11045 0.92341 1.24994 0.97946 0.95915 0.96023 1.69954 1.35206 1.32917 1.16484 0.86702 0.86491 0.77789 0.77195 1.20557 1.21694 1.20420 1.62064 1.57710 1.02143 1.01328 1.22035 0.95134 0.91494 0.98602 1.22174 1.03710 0.98012 0.93206 1.21026 0.76346 0.97153 0.95945 1.22335 1.01730 1.00940 0.97667 1.92801 1.34599 1.97104 1.95060 1.22143 1.01922 0.94491 0.98407 1.22031 0.98007 0.97089 0.90598 0.92766 0.92601 0.94206 0.96707 0.95949 0.93299 0.95213 0.89153 0.89198 0.91207 0.91744 0.91889 0.90597 0.89350 0.91320 0.90898 0.95275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.40 37.16 0.31 -2.97 16 2 C 0.09 1.80 2.26 -67.71 -0.15 1.65 16 3 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 4 C 0.03 0.77 4.40 -27.88 -0.12 0.65 16 5 C -0.49 -13.62 8.80 -34.44 -0.30 -13.92 16 6 H 0.06 1.62 7.75 -52.49 -0.41 1.22 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.51 -9.77 4.26 -226.72 -0.97 -10.74 16 14 C 0.06 1.01 4.36 -3.84 -0.02 0.99 16 15 C -0.13 -2.04 5.16 -26.65 -0.14 -2.18 16 16 C 0.11 1.58 1.25 -90.49 -0.11 1.47 16 17 C -0.17 -1.86 8.94 37.16 0.33 -1.53 16 18 F -0.21 -3.39 15.97 2.25 0.04 -3.35 16 19 C -0.13 -1.83 5.16 -26.65 -0.14 -1.97 16 20 C 0.05 0.83 5.07 -3.85 -0.02 0.81 16 21 H 0.05 0.97 6.44 -51.93 -0.33 0.64 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.65 6.93 -51.93 -0.36 0.29 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.02 0.60 6.39 -51.93 -0.33 0.27 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.54 6.30 -51.93 -0.33 0.21 16 28 H 0.09 1.86 6.28 -51.93 -0.33 1.53 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 37 H 0.03 0.48 6.71 -51.93 -0.35 0.13 16 LS Contribution 287.93 15.07 4.34 4.34 Total: -1.00 -29.83 287.93 -7.53 -37.36 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.20 Total: -2.42 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.46 Total: -15.66 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.23 Total: -37.24 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.83 -7.53 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602992783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.983 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds