Wall clock time and date at job start Sun Mar 29 2020 21:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47716 * 2 1 4 4 C 1.53001 * 109.46774 * 120.00234 * 2 1 3 5 5 C 1.50697 * 109.47225 * 183.57186 * 4 2 1 6 6 H 1.07997 * 119.99946 * 5.08563 * 5 4 2 7 7 C 1.37874 * 120.00157 * 185.07985 * 5 4 2 8 8 N 1.31518 * 120.00245 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00235 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47362 * 59.99979 * 9 7 5 11 11 H 1.48499 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47213 * 300.00215 * 9 7 5 13 13 N 1.46902 * 109.46993 * 239.99314 * 2 1 3 14 14 C 1.46840 * 111.00318 * 308.75184 * 13 2 1 15 15 C 1.53038 * 109.51287 * 185.83189 * 14 13 2 16 16 C 1.53119 * 109.28157 * 300.82561 * 15 14 13 17 17 C 1.53001 * 109.52689 * 177.55789 * 16 15 14 18 18 F 1.39901 * 109.52551 * 297.75248 * 16 15 14 19 19 C 1.53124 * 109.15845 * 57.65246 * 16 15 14 20 20 C 1.46827 * 110.98043 * 72.97147 * 13 2 1 21 21 H 1.08996 * 109.47716 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47606 * 300.00647 * 1 2 3 23 23 H 1.09004 * 109.46664 * 60.00016 * 1 2 3 24 24 H 1.09003 * 109.46891 * 303.57137 * 4 2 1 25 25 H 1.09002 * 109.47321 * 63.57046 * 4 2 1 26 26 H 0.97001 * 120.00122 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.46171 * 65.82282 * 14 13 2 28 28 H 1.08994 * 109.46535 * 305.84298 * 14 13 2 29 29 H 1.08998 * 109.50459 * 60.76870 * 15 14 13 30 30 H 1.09005 * 109.50670 * 180.84639 * 15 14 13 31 31 H 1.09000 * 109.46591 * 59.99910 * 17 16 15 32 32 H 1.08998 * 109.47151 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.47126 * 300.00647 * 17 16 15 34 34 H 1.09002 * 109.49926 * 62.28969 * 19 16 15 35 35 H 1.09002 * 109.50403 * 182.36436 * 19 16 15 36 36 H 1.08995 * 109.46893 * 54.13800 * 20 13 2 37 37 H 1.09005 * 109.45612 * 294.15739 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5442 -0.6452 1.2944 6 1 4.0779 -0.0646 0.5565 7 6 4.2393 -1.3166 2.2778 8 7 3.5895 -2.0239 3.1762 9 14 6.1040 -1.2217 2.3342 10 1 6.5229 0.1932 2.5013 11 1 6.6063 -2.0254 3.4775 12 1 6.6655 -1.7578 1.0683 13 7 2.0196 -0.6927 -1.1994 14 6 1.3860 -2.0096 -1.3421 15 6 2.0233 -2.7591 -2.5144 16 6 1.8402 -1.9421 -3.7963 17 6 2.5282 -2.6570 -4.9610 18 9 0.4756 -1.8036 -4.0717 19 6 2.4663 -0.5580 -3.6038 20 6 1.8163 0.1277 -2.4000 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.6251 -0.2458 2.1381 25 1 1.7297 -1.7658 1.2178 26 1 4.0785 -2.4966 3.8678 27 1 0.3199 -1.8813 -1.5295 28 1 1.5273 -2.5819 -0.4253 29 1 3.0868 -2.8999 -2.3213 30 1 1.5427 -3.7307 -2.6296 31 1 2.0857 -3.6442 -5.0936 32 1 2.3970 -2.0749 -5.8732 33 1 3.5917 -2.7615 -4.7460 34 1 3.5368 -0.6642 -3.4279 35 1 2.3024 0.0432 -4.4982 36 1 2.2699 1.1076 -2.2516 37 1 0.7481 0.2458 -2.5825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602992783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:19 Heat of formation + Delta-G solvation = -82.028204 kcal Electronic energy + Delta-G solvation = -17171.674067 eV Core-core repulsion = 14475.776067 eV Total energy + Delta-G solvation = -2695.898000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.62703 -40.03651 -36.34498 -34.59009 -32.24764 -31.79953 -29.25998 -28.20647 -25.20562 -24.44439 -23.32852 -21.15118 -20.07204 -18.33036 -17.24547 -16.57103 -16.50860 -16.38343 -16.00303 -15.60701 -15.05221 -14.64554 -14.07401 -13.90648 -13.62013 -13.49971 -13.35894 -13.08206 -12.98487 -12.75498 -12.69753 -12.51454 -12.38795 -12.30037 -12.08048 -11.80994 -11.32484 -11.10876 -11.07024 -10.84146 -10.45073 -8.91245 -8.07450 -6.12275 1.43532 1.46200 1.53585 2.49300 3.07623 3.28811 3.54914 3.65616 3.77835 3.83547 4.12760 4.31020 4.35301 4.38456 4.45658 4.59331 4.65782 4.68935 4.70881 4.83678 4.88928 4.93018 5.06885 5.13247 5.14614 5.18772 5.22091 5.30570 5.43396 5.52489 5.70337 5.90998 6.32382 6.44971 6.53311 7.00727 7.53094 9.04560 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.029272 B = 0.008100 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.300554 B = 3456.012912 C = 3904.304867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.067 0.933 4 C 0.037 3.963 5 C -0.497 4.497 6 H 0.059 0.941 7 C -0.005 4.005 8 N -0.942 5.942 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.525 5.525 14 C 0.059 3.941 15 C -0.131 4.131 16 C 0.112 3.888 17 C -0.163 4.163 18 F -0.225 7.225 19 C -0.128 4.128 20 C 0.050 3.950 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.060 0.940 24 H -0.011 1.011 25 H -0.003 1.003 26 H 0.258 0.742 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 0.958 -15.518 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 H 0.085 0.915 4 C -0.001 4.001 5 C -0.535 4.535 6 H 0.077 0.923 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.249 5.249 14 C -0.069 4.069 15 C -0.169 4.169 16 C 0.094 3.906 17 C -0.221 4.221 18 F -0.206 7.206 19 C -0.166 4.166 20 C -0.078 4.078 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.007 0.993 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.274 0.791 -15.335 15.523 hybrid contribution -0.223 -0.041 0.657 0.695 sum -2.497 0.750 -14.677 14.907 Atomic orbital electron populations 1.22380 0.97610 1.01435 1.01773 1.21625 0.91776 0.97258 0.90768 0.91481 1.19040 0.95407 0.94367 0.91248 1.21423 0.92865 1.28442 1.10785 0.92317 1.25854 1.02946 0.95619 0.95698 1.70096 1.37117 1.33929 1.17246 0.85619 0.80536 0.78136 0.77405 1.19575 1.21516 1.19458 1.61975 1.58183 1.02803 1.01985 1.21934 0.95520 0.91109 0.98328 1.22158 1.03116 0.98603 0.93013 1.21129 0.76042 0.97237 0.96195 1.22298 1.01940 1.01094 0.96748 1.92785 1.35568 1.97149 1.95076 1.22157 1.01645 0.94636 0.98169 1.22115 0.98426 0.97145 0.90069 0.93341 0.92260 0.92085 0.99289 0.98453 0.93334 0.95123 0.92654 0.89737 0.89953 0.91115 0.90396 0.89582 0.89215 0.88766 0.90368 0.95229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.14 8.40 71.98 0.60 -5.53 16 2 C 0.09 3.91 2.26 44.91 0.10 4.01 16 3 H 0.07 2.78 7.93 -2.39 -0.02 2.76 16 4 C 0.04 1.93 4.40 29.85 0.13 2.06 16 5 C -0.50 -28.17 8.80 25.60 0.23 -27.94 16 6 H 0.06 3.26 7.75 -2.91 -0.02 3.24 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.53 -19.98 4.26 -871.21 -3.71 -23.69 16 14 C 0.06 2.16 4.36 86.33 0.38 2.54 16 15 C -0.13 -3.88 5.16 30.65 0.16 -3.72 16 16 C 0.11 2.84 1.25 -10.71 -0.01 2.83 16 17 C -0.16 -3.05 8.94 71.98 0.64 -2.41 16 18 F -0.22 -6.55 15.97 44.97 0.72 -5.83 16 19 C -0.13 -3.20 5.16 30.65 0.16 -3.04 16 20 C 0.05 1.53 5.07 86.33 0.44 1.97 16 21 H 0.05 1.75 6.44 -2.39 -0.02 1.74 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.06 1.90 6.93 -2.39 -0.02 1.88 16 24 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 25 H 0.00 -0.16 6.39 -2.39 -0.02 -0.18 16 26 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.03 1.10 6.30 -2.39 -0.02 1.09 16 28 H 0.05 2.38 6.28 -2.39 -0.02 2.37 16 29 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 2.29 7.98 -2.39 -0.02 2.27 16 37 H 0.03 0.91 6.71 -2.38 -0.02 0.89 16 Total: -1.00 -64.18 287.93 3.63 -60.56 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.02 Total: 8.53 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 3.28 Total: -29.09 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -3.42 Total: -81.41 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.72 Total: -5.83 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.18 3.63 -60.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602992783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.471 kcal (2) G-P(sol) polarization free energy of solvation -64.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds