Wall clock time and date at job start Sun Mar 29 2020 21:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86803 * 120.00384 * 2 1 4 4 H 1.48504 * 109.47228 * 270.00459 * 3 2 1 5 5 H 1.48501 * 109.46775 * 29.99946 * 3 2 1 6 6 H 1.48495 * 109.47200 * 150.00158 * 3 2 1 7 7 C 1.39007 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00405 * 190.90290 * 7 2 1 9 9 N 1.36895 * 119.99847 * 10.91325 * 7 2 1 10 10 C 1.38213 * 125.61646 * 222.62203 * 9 7 2 11 11 C 1.46894 * 125.43613 * 359.97409 * 10 9 7 12 12 N 1.34773 * 120.00022 * 6.01385 * 11 10 9 13 13 O 1.21672 * 119.99776 * 186.00356 * 11 10 9 14 14 C 1.36118 * 109.12685 * 180.02562 * 10 9 7 15 15 C 1.41699 * 107.75006 * 359.97438 * 14 10 9 16 16 C 1.40019 * 133.35062 * 180.02562 * 15 14 10 17 17 C 1.36585 * 119.83084 * 180.02562 * 16 15 14 18 18 C 1.38855 * 120.59480 * 359.97438 * 17 16 15 19 19 C 1.37845 * 120.63997 * 0.29058 * 18 17 16 20 20 C 1.37838 * 125.62158 * 42.63635 * 9 7 2 21 21 H 0.97002 * 119.99780 * 4.94429 * 1 2 3 22 22 H 0.96996 * 120.00028 * 5.10100 * 12 11 10 23 23 H 0.96999 * 119.99812 * 185.10222 * 12 11 10 24 24 H 1.08000 * 126.12743 * 180.02562 * 14 10 9 25 25 H 1.07993 * 120.08755 * 359.97438 * 16 15 14 26 26 H 1.07996 * 119.70147 * 179.97438 * 17 16 15 27 27 H 1.08006 * 119.67598 * 179.97438 * 18 17 16 28 28 H 1.07997 * 120.09812 * 179.69054 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4950 2.0465 -1.4001 5 1 1.4450 2.6526 0.7000 6 1 3.5451 1.4401 0.7000 7 6 2.0085 -1.2038 -0.0005 8 1 3.0739 -1.2124 0.1764 9 7 1.3426 -2.3785 -0.2255 10 6 1.5358 -3.5588 0.4673 11 6 2.4913 -3.7549 1.5656 12 7 3.1820 -2.7055 2.0535 13 8 2.6591 -4.8649 2.0351 14 6 0.7002 -4.5106 -0.0313 15 6 -0.0524 -3.9201 -1.0766 16 6 -1.0464 -4.4027 -1.9365 17 6 -1.5998 -3.5725 -2.8692 18 6 -1.1860 -2.2511 -2.9733 19 6 -0.2053 -1.7544 -2.1417 20 6 0.3691 -2.5793 -1.1805 21 1 -0.4850 0.8370 -0.0724 22 1 2.9953 -1.8099 1.7311 23 1 3.8658 -2.8458 2.7270 24 1 0.6239 -5.5326 0.3094 25 1 -1.3741 -5.4291 -1.8631 26 1 -2.3660 -3.9471 -3.5317 27 1 -1.6334 -1.6076 -3.7165 28 1 0.1133 -0.7266 -2.2336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609159363.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:23 Heat of formation + Delta-G solvation = 16.062838 kcal Electronic energy + Delta-G solvation = -15628.326895 eV Core-core repulsion = 13030.359566 eV Total energy + Delta-G solvation = -2597.967329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46243 -38.18817 -35.92306 -33.80132 -32.81631 -30.72008 -28.97643 -27.96647 -25.06119 -23.22218 -21.03568 -20.18147 -19.17715 -18.23412 -16.35114 -16.21990 -15.62088 -14.87458 -14.56779 -14.21839 -13.85540 -13.12228 -12.98989 -12.96592 -12.50765 -11.95820 -11.76811 -11.41640 -11.26732 -10.78983 -10.67636 -10.28227 -9.81318 -9.50180 -9.29458 -8.99440 -8.65293 -7.25650 -6.89548 -6.58127 -4.73059 1.82712 2.72949 2.91308 2.91752 2.95139 3.14793 3.65498 4.23133 4.28904 4.53859 4.73102 5.05888 5.77787 5.90185 5.94439 6.15667 6.42215 6.55017 6.67377 6.79478 6.89075 7.08397 7.10693 7.36983 7.48600 7.55674 7.62257 7.90210 7.92125 8.14616 8.27570 8.66567 9.02670 9.23630 10.08537 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.015101 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.513787 B = 1853.698450 C = 3269.822780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.057 3.943 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.260 5.260 10 C -0.022 4.022 11 C 0.600 3.400 12 N -0.856 5.856 13 O -0.565 6.565 14 C -0.164 4.164 15 C -0.134 4.134 16 C -0.085 4.085 17 C -0.161 4.161 18 C -0.145 4.145 19 C -0.057 4.057 20 C 0.105 3.895 21 H 0.284 0.716 22 H 0.415 0.585 23 H 0.389 0.611 24 H 0.133 0.867 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 1.449 -1.956 2.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.157 4.157 3 Si 0.752 3.248 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.505 4.505 8 H 0.127 0.873 9 N 0.076 4.924 10 C -0.137 4.137 11 C 0.387 3.613 12 N -0.425 5.425 13 O -0.445 6.445 14 C -0.192 4.192 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.180 4.180 18 C -0.166 4.166 19 C -0.077 4.077 20 C -0.010 4.010 21 H 0.095 0.905 22 H 0.254 0.746 23 H 0.218 0.782 24 H 0.150 0.850 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.214 1.198 -1.585 2.329 hybrid contribution 0.402 1.341 0.170 1.410 sum 1.616 2.539 -1.415 3.326 Atomic orbital electron populations 1.69961 1.06332 1.29768 1.38233 1.25696 0.95574 1.00539 0.93922 0.85902 0.79549 0.79926 0.79450 1.19241 1.20038 1.18594 1.19611 0.93265 0.82503 1.55129 0.87282 1.39940 1.25899 1.06704 1.19833 1.20103 1.04605 0.89495 0.99499 1.17256 0.79067 0.83906 0.81036 1.44500 1.40778 1.12083 1.45101 1.90748 1.67557 1.24779 1.61417 1.20403 0.99847 0.98550 1.00390 1.18040 1.01354 0.93956 1.00550 1.20069 0.96398 0.98370 0.95530 1.20272 1.02413 0.94486 1.00846 1.20580 0.99416 0.95617 1.00955 1.20064 0.95978 0.98124 0.93508 1.18220 0.96028 0.93582 0.93145 0.90543 0.74625 0.78213 0.84959 0.87708 0.87884 0.87674 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.86 10.82 55.50 0.60 -19.26 15 2 C 0.06 1.29 4.67 -17.47 -0.08 1.21 15 3 Si 0.93 17.06 29.57 -169.99 -5.03 12.04 15 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 7 C -0.38 -8.85 7.68 -15.01 -0.12 -8.96 15 8 H 0.11 2.35 6.43 -52.49 -0.34 2.01 15 9 N -0.26 -6.47 2.81 -56.08 -0.16 -6.63 15 10 C -0.02 -0.54 6.77 -82.25 -0.56 -1.10 15 11 C 0.60 13.57 8.04 -12.76 -0.10 13.47 15 12 N -0.86 -15.94 8.66 30.31 0.26 -15.68 15 13 O -0.57 -13.73 17.68 5.21 0.09 -13.64 15 14 C -0.16 -3.88 10.55 -39.02 -0.41 -4.30 15 15 C -0.13 -3.18 6.16 -106.89 -0.66 -3.84 15 16 C -0.08 -1.74 10.06 -39.51 -0.40 -2.14 15 17 C -0.16 -3.09 9.97 -39.95 -0.40 -3.49 15 18 C -0.15 -2.93 10.02 -39.50 -0.40 -3.32 15 19 C -0.06 -1.32 8.56 -39.41 -0.34 -1.66 15 20 C 0.11 2.62 6.04 -83.83 -0.51 2.12 15 21 H 0.28 6.42 8.31 -40.82 -0.34 6.08 15 22 H 0.41 7.80 4.90 -40.82 -0.20 7.60 15 23 H 0.39 5.96 8.93 -40.82 -0.36 5.59 15 24 H 0.13 2.89 8.06 -52.49 -0.42 2.46 15 25 H 0.10 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.10 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.11 1.81 8.06 -52.48 -0.42 1.39 15 28 H 0.11 2.64 6.64 -52.49 -0.35 2.29 15 LS Contribution 246.84 15.07 3.72 3.72 Total: -1.00 -28.25 246.84 -6.55 -34.80 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -2.08 Total: 16.66 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.96 Total: -12.01 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.71 Total: -41.57 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.25 -6.55 -34.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609159363.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.864 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds