Wall clock time and date at job start Sun Mar 29 2020 21:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46687 * 2 1 4 4 C 1.42906 * 113.99767 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47243 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47407 * 305.00495 * 5 4 3 7 7 O 1.42906 * 109.46948 * 64.99950 * 5 4 3 8 8 C 1.52997 * 109.47276 * 184.99914 * 5 4 3 9 9 N 1.46498 * 109.47166 * 180.02562 * 8 5 4 10 10 C 1.36936 * 120.00017 * 89.99928 * 9 8 5 11 11 H 1.07997 * 120.00457 * 216.80054 * 10 9 8 12 12 C 1.38820 * 119.99878 * 36.80545 * 10 9 8 13 13 N 1.31627 * 119.99757 * 21.11330 * 12 10 9 14 14 Si 1.86794 * 120.00088 * 201.10987 * 12 10 9 15 15 H 1.48500 * 109.47137 * 60.00132 * 14 12 10 16 16 H 1.48507 * 109.47021 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47249 * 299.99838 * 14 12 10 18 18 C 1.46502 * 120.00332 * 270.00081 * 9 8 5 19 19 C 1.52992 * 117.50172 * 194.51007 * 18 9 8 20 20 C 1.52996 * 117.49762 * 125.85044 * 18 9 8 21 21 H 1.08998 * 109.47186 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47097 * 299.99932 * 1 2 3 23 23 H 1.09001 * 109.47224 * 60.00180 * 1 2 3 24 24 H 1.09000 * 109.47573 * 240.00282 * 2 1 3 25 25 H 1.09001 * 109.47224 * 119.99820 * 2 1 3 26 26 H 1.09004 * 109.46817 * 59.99695 * 4 3 2 27 27 H 1.08996 * 109.47268 * 300.00269 * 4 3 2 28 28 H 0.96706 * 113.99521 * 59.99758 * 7 5 4 29 29 H 1.08997 * 109.47377 * 300.00599 * 8 5 4 30 30 H 1.09004 * 109.47136 * 60.00413 * 8 5 4 31 31 H 0.96996 * 119.99951 * 174.77814 * 13 12 10 32 32 H 1.08996 * 115.54651 * 340.18409 * 18 9 8 33 33 H 1.09003 * 117.50097 * 0.02562 * 19 18 9 34 34 H 1.09003 * 117.50202 * 145.01939 * 19 18 9 35 35 H 1.09003 * 117.49693 * 214.97942 * 20 18 9 36 36 H 1.08995 * 117.50204 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 1 3.3498 3.4411 -0.8424 7 8 3.3974 3.5462 1.2204 8 6 5.3453 3.0607 -0.1252 9 7 5.7230 4.4761 -0.1252 10 6 5.9989 5.1112 1.0562 11 1 5.7043 6.1405 1.1976 12 6 6.6574 4.4319 2.0721 13 7 7.3745 3.3641 1.7925 14 14 6.5259 5.0332 3.8357 15 1 5.1025 5.0190 4.2586 16 1 7.3153 4.1415 4.7228 17 1 7.0559 6.4174 3.9276 18 6 5.8056 5.2123 -1.3892 19 6 6.5211 6.5645 -1.3738 20 6 4.9974 6.5060 -1.5073 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8340 0.9765 -0.8892 27 1 3.8333 0.9768 0.8907 28 1 3.7819 3.1486 2.0137 29 1 5.8208 2.5581 0.7170 30 1 5.6717 2.5972 -1.0562 31 1 7.8953 2.9338 2.4885 32 1 5.9077 4.5990 -2.2845 33 1 6.9308 6.9063 -0.4233 34 1 7.0937 6.8411 -2.2591 35 1 4.5681 6.7441 -2.4806 36 1 4.4039 6.8092 -0.6449 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609600264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:16 Heat of formation + Delta-G solvation = -53.541418 kcal Electronic energy + Delta-G solvation = -16764.495582 eV Core-core repulsion = 14057.460072 eV Total energy + Delta-G solvation = -2707.035510 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.17271 -37.06965 -35.63861 -33.13871 -31.44453 -30.70444 -28.66056 -25.24858 -23.38625 -22.62382 -21.31234 -20.79226 -19.79576 -16.97504 -16.11810 -15.91335 -15.53153 -15.11529 -14.49167 -14.27520 -13.99627 -13.61034 -12.82967 -12.71870 -12.52798 -12.11532 -11.80302 -11.21613 -11.15382 -11.07010 -10.78457 -10.73969 -10.54473 -10.46297 -10.01582 -9.88783 -9.63237 -9.35091 -9.25956 -8.99930 -8.43002 -6.45060 -5.81777 -3.34309 3.36462 3.42171 3.47513 3.91142 4.45445 4.98250 5.09280 5.13110 5.28726 5.35379 5.36850 5.42684 5.61653 5.69234 5.76304 5.92745 5.94238 5.96858 6.12623 6.13423 6.25628 6.35755 6.48595 6.54252 6.66201 6.83828 7.04876 7.21979 7.49311 7.51653 7.83893 8.49402 8.65638 9.15657 9.77731 10.34043 11.19630 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.008523 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.521410 B = 3284.446291 C = 4073.916821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.381 6.381 4 C 0.031 3.969 5 C 0.093 3.907 6 H 0.085 0.915 7 O -0.539 6.539 8 C 0.120 3.880 9 N -0.540 5.540 10 C -0.235 4.235 11 H 0.060 0.940 12 C 0.008 3.992 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.282 1.282 18 C 0.125 3.875 19 C -0.196 4.196 20 C -0.226 4.226 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.364 0.636 29 H 0.104 0.896 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 -5.558 -4.004 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.300 6.300 4 C -0.046 4.046 5 C 0.030 3.970 6 H 0.103 0.897 7 O -0.343 6.343 8 C -0.007 4.007 9 N -0.255 5.255 10 C -0.365 4.365 11 H 0.078 0.922 12 C -0.191 4.191 13 N -0.541 5.541 14 Si 0.728 3.272 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.208 1.208 18 C 0.016 3.984 19 C -0.235 4.235 20 C -0.267 4.267 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.210 0.790 29 H 0.122 0.878 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.401 -5.199 -4.265 10.000 hybrid contribution 0.508 -0.323 1.215 1.356 sum -6.893 -5.522 -3.049 9.344 Atomic orbital electron populations 1.21721 0.94197 1.01663 1.03085 1.22418 0.95338 0.84999 0.99562 1.87993 1.21667 1.25066 1.95293 1.23448 0.80699 1.00458 1.00011 1.22772 0.97889 0.88031 0.88262 0.89709 1.86536 1.71235 1.61665 1.14829 1.21563 0.90199 0.86759 1.02229 1.43161 1.75173 1.06625 1.00550 1.18846 1.30686 0.97271 0.89690 0.92207 1.25122 0.96650 0.98223 0.99064 1.69874 1.28863 1.22837 1.32572 0.86432 0.78004 0.78162 0.84624 1.20478 1.21798 1.20820 1.21127 1.00507 0.86549 0.90258 1.23079 0.93956 1.04539 1.01964 1.23367 0.93968 1.08546 1.00802 0.91584 0.91889 0.92024 0.93956 0.93851 0.93305 0.93394 0.79017 0.87840 0.94773 0.93384 0.89514 0.88360 0.90880 0.91021 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.27 16 2 C 0.05 0.71 6.66 37.16 0.25 0.96 16 3 O -0.38 -6.62 10.31 -40.08 -0.41 -7.04 16 4 C 0.03 0.54 5.57 37.16 0.21 0.75 16 5 C 0.09 1.88 3.52 -26.73 -0.09 1.79 16 6 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 7 O -0.54 -12.10 12.58 -40.08 -0.50 -12.61 16 8 C 0.12 2.67 5.05 -4.04 -0.02 2.65 16 9 N -0.54 -13.17 2.74 -165.67 -0.45 -13.63 16 10 C -0.24 -6.24 7.42 -15.06 -0.11 -6.36 16 11 H 0.06 1.65 7.16 -52.49 -0.38 1.27 16 12 C 0.01 0.22 4.97 -17.42 -0.09 0.13 16 13 N -0.90 -24.69 11.39 55.49 0.63 -24.06 16 14 Si 0.90 21.23 29.61 -169.99 -5.03 16.20 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.13 2.72 6.61 -67.94 -0.45 2.27 16 19 C -0.20 -4.02 9.81 -26.70 -0.26 -4.28 16 20 C -0.23 -4.52 10.08 -26.70 -0.27 -4.78 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.36 7.67 9.05 45.56 0.41 8.08 16 29 H 0.10 2.55 5.44 -51.93 -0.28 2.27 16 30 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 31 H 0.26 6.85 8.32 -40.82 -0.34 6.52 16 32 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 33 H 0.10 2.22 6.95 -51.93 -0.36 1.86 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.89 7.97 -51.93 -0.41 1.48 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -29.08 300.36 -6.92 -36.00 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.22 Total: 8.76 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.46 Total: -8.16 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.18 Total: -37.69 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.92 Total: -19.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.08 -6.92 -36.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609600264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.541 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds