Wall clock time and date at job start Sun Mar 29 2020 21:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46687 * 2 1 4 4 C 1.42906 * 113.99767 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47243 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47407 * 305.00495 * 5 4 3 7 7 O 1.42906 * 109.46948 * 64.99950 * 5 4 3 8 8 C 1.52997 * 109.47276 * 184.99914 * 5 4 3 9 9 N 1.46498 * 109.47166 * 180.02562 * 8 5 4 10 10 C 1.36936 * 120.00017 * 89.99928 * 9 8 5 11 11 H 1.07997 * 120.00457 * 216.80054 * 10 9 8 12 12 C 1.38820 * 119.99878 * 36.80545 * 10 9 8 13 13 N 1.31627 * 119.99757 * 21.11330 * 12 10 9 14 14 Si 1.86794 * 120.00088 * 201.10987 * 12 10 9 15 15 H 1.48500 * 109.47137 * 60.00132 * 14 12 10 16 16 H 1.48507 * 109.47021 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47249 * 299.99838 * 14 12 10 18 18 C 1.46502 * 120.00332 * 270.00081 * 9 8 5 19 19 C 1.52992 * 117.50172 * 194.51007 * 18 9 8 20 20 C 1.52996 * 117.49762 * 125.85044 * 18 9 8 21 21 H 1.08998 * 109.47186 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47097 * 299.99932 * 1 2 3 23 23 H 1.09001 * 109.47224 * 60.00180 * 1 2 3 24 24 H 1.09000 * 109.47573 * 240.00282 * 2 1 3 25 25 H 1.09001 * 109.47224 * 119.99820 * 2 1 3 26 26 H 1.09004 * 109.46817 * 59.99695 * 4 3 2 27 27 H 1.08996 * 109.47268 * 300.00269 * 4 3 2 28 28 H 0.96706 * 113.99521 * 59.99758 * 7 5 4 29 29 H 1.08997 * 109.47377 * 300.00599 * 8 5 4 30 30 H 1.09004 * 109.47136 * 60.00413 * 8 5 4 31 31 H 0.96996 * 119.99951 * 174.77814 * 13 12 10 32 32 H 1.08996 * 115.54651 * 340.18409 * 18 9 8 33 33 H 1.09003 * 117.50097 * 0.02562 * 19 18 9 34 34 H 1.09003 * 117.50202 * 145.01939 * 19 18 9 35 35 H 1.09003 * 117.49693 * 214.97942 * 20 18 9 36 36 H 1.08995 * 117.50204 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 1 3.3498 3.4411 -0.8424 7 8 3.3974 3.5462 1.2204 8 6 5.3453 3.0607 -0.1252 9 7 5.7230 4.4761 -0.1252 10 6 5.9989 5.1112 1.0562 11 1 5.7043 6.1405 1.1976 12 6 6.6574 4.4319 2.0721 13 7 7.3745 3.3641 1.7925 14 14 6.5259 5.0332 3.8357 15 1 5.1025 5.0190 4.2586 16 1 7.3153 4.1415 4.7228 17 1 7.0559 6.4174 3.9276 18 6 5.8056 5.2123 -1.3892 19 6 6.5211 6.5645 -1.3738 20 6 4.9974 6.5060 -1.5073 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8340 0.9765 -0.8892 27 1 3.8333 0.9768 0.8907 28 1 3.7819 3.1486 2.0137 29 1 5.8208 2.5581 0.7170 30 1 5.6717 2.5972 -1.0562 31 1 7.8953 2.9338 2.4885 32 1 5.9077 4.5990 -2.2845 33 1 6.9308 6.9063 -0.4233 34 1 7.0937 6.8411 -2.2591 35 1 4.5681 6.7441 -2.4806 36 1 4.4039 6.8092 -0.6449 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609600264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:15 Heat of formation + Delta-G solvation = -72.966380 kcal Electronic energy + Delta-G solvation = -16765.337911 eV Core-core repulsion = 14057.460072 eV Total energy + Delta-G solvation = -2707.877839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65776 -38.63568 -37.24088 -35.01200 -32.88147 -32.23820 -30.26351 -27.04222 -25.08052 -23.65062 -22.94187 -22.40980 -21.60994 -18.67163 -17.60436 -17.41472 -17.02482 -16.80572 -16.16505 -15.95876 -15.53826 -15.28048 -14.38489 -14.06334 -13.85147 -13.57958 -13.19808 -13.00251 -12.66657 -12.65756 -12.37206 -12.21844 -12.17789 -12.14728 -11.86947 -11.60906 -11.38810 -10.95666 -10.68737 -10.52516 -10.39749 -8.37620 -7.80720 -5.37274 1.45980 1.49533 1.57009 2.48315 2.70243 3.17692 3.47564 3.53001 3.78360 4.10244 4.16299 4.24239 4.30832 4.42037 4.46875 4.49987 4.51040 4.57450 4.67150 4.78969 4.90425 4.95862 5.02716 5.06897 5.16807 5.26267 5.36609 5.55880 5.67060 5.75582 6.30053 6.50454 6.96678 7.19670 7.86669 8.37537 9.15913 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.008523 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.521410 B = 3284.446291 C = 4073.916821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.407 6.407 4 C 0.042 3.958 5 C 0.100 3.900 6 H 0.076 0.924 7 O -0.559 6.559 8 C 0.123 3.877 9 N -0.558 5.558 10 C -0.236 4.236 11 H 0.041 0.959 12 C -0.028 4.028 13 N -0.920 5.920 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.291 1.291 17 H -0.285 1.285 18 C 0.100 3.900 19 C -0.192 4.192 20 C -0.209 4.209 21 H 0.095 0.905 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.367 0.633 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.254 0.746 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -6.214 -4.927 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.327 6.327 4 C -0.035 4.035 5 C 0.038 3.962 6 H 0.094 0.906 7 O -0.363 6.363 8 C -0.004 4.004 9 N -0.274 5.274 10 C -0.367 4.367 11 H 0.059 0.941 12 C -0.225 4.225 13 N -0.564 5.564 14 Si 0.779 3.221 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.211 1.211 18 C -0.008 4.008 19 C -0.231 4.231 20 C -0.250 4.250 21 H 0.113 0.887 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.213 0.787 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.098 -5.856 -5.204 11.267 hybrid contribution 0.677 -0.110 1.436 1.592 sum -7.421 -5.966 -3.768 10.240 Atomic orbital electron populations 1.21749 0.92714 1.03404 1.02502 1.22716 0.96593 0.83178 1.00700 1.87945 1.21330 1.27870 1.95517 1.23188 0.81234 0.98005 1.01114 1.22593 0.96353 0.90093 0.87121 0.90562 1.86497 1.71527 1.62633 1.15661 1.21497 0.91298 0.85755 1.01823 1.43341 1.75793 1.07397 1.00894 1.18800 1.30144 0.96691 0.91047 0.94090 1.25584 0.96734 0.98629 1.01542 1.69973 1.29669 1.23715 1.33090 0.85630 0.77706 0.77424 0.81378 1.20434 1.21646 1.21087 1.21462 1.02028 0.87307 0.90022 1.23063 0.94629 1.03513 1.01903 1.23292 0.93445 1.06767 1.01449 0.88681 0.92800 0.92275 0.92324 0.93134 0.91271 0.93144 0.78704 0.90097 0.93461 0.93687 0.87264 0.91207 0.87767 0.87697 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.28 71.98 0.74 -2.19 16 2 C 0.04 1.07 6.66 71.98 0.48 1.55 16 3 O -0.41 -13.57 10.31 -144.34 -1.49 -15.05 16 4 C 0.04 1.39 5.57 71.98 0.40 1.79 16 5 C 0.10 4.01 3.52 30.59 0.11 4.12 16 6 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 7 O -0.56 -25.22 12.58 -144.34 -1.82 -27.04 16 8 C 0.12 5.44 5.05 86.38 0.44 5.88 16 9 N -0.56 -27.20 2.74 -678.06 -1.86 -29.06 16 10 C -0.24 -12.71 7.42 84.04 0.62 -12.09 16 11 H 0.04 2.33 7.16 -2.91 -0.02 2.31 16 12 C -0.03 -1.52 4.97 84.86 0.42 -1.10 16 13 N -0.92 -50.94 11.39 21.65 0.25 -50.70 16 14 Si 0.95 44.13 29.61 68.60 2.03 46.16 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 18 C 0.10 4.23 6.61 44.99 0.30 4.53 16 19 C -0.19 -7.62 9.81 30.61 0.30 -7.32 16 20 C -0.21 -8.04 10.08 30.62 0.31 -7.73 16 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.37 15.67 9.05 -74.05 -0.67 15.00 16 29 H 0.08 4.02 5.44 -2.39 -0.01 4.00 16 30 H 0.05 1.92 8.04 -2.38 -0.02 1.90 16 31 H 0.25 13.67 8.32 -92.71 -0.77 12.90 16 32 H 0.11 4.07 8.10 -2.39 -0.02 4.05 16 33 H 0.07 3.17 6.95 -2.39 -0.02 3.16 16 34 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.06 2.69 7.97 -2.39 -0.02 2.67 16 Total: -1.00 -61.63 300.36 1.61 -60.02 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.38 Total: 28.21 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.12 Total: -12.56 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -1.61 Total: -79.75 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -3.30 Total: -42.09 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -61.63 1.61 -60.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609600264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.942 kcal (2) G-P(sol) polarization free energy of solvation -61.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds