Wall clock time and date at job start Sun Mar 29 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42891 * 109.47297 * 2 1 4 4 C 1.42902 * 114.00412 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47298 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47285 * 55.00451 * 5 4 3 7 7 O 1.42903 * 109.47582 * 295.00164 * 5 4 3 8 8 C 1.52999 * 109.46933 * 175.00225 * 5 4 3 9 9 N 1.46501 * 109.47308 * 185.00210 * 8 5 4 10 10 C 1.36938 * 119.99973 * 89.99844 * 9 8 5 11 11 H 1.08002 * 120.00339 * 218.14931 * 10 9 8 12 12 C 1.38816 * 120.00448 * 38.14545 * 10 9 8 13 13 N 1.31621 * 119.99209 * 20.54419 * 12 10 9 14 14 Si 1.86789 * 120.00444 * 200.54432 * 12 10 9 15 15 H 1.48502 * 109.47313 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47354 * 119.99797 * 14 12 10 17 17 H 1.48504 * 109.47161 * 239.99900 * 14 12 10 18 18 C 1.46499 * 120.00334 * 270.00234 * 9 8 5 19 19 C 1.52998 * 117.50139 * 193.73011 * 18 9 8 20 20 C 1.52993 * 117.50133 * 125.10532 * 18 9 8 21 21 H 1.08997 * 109.46992 * 60.00457 * 1 2 3 22 22 H 1.09002 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46817 * 300.00286 * 1 2 3 24 24 H 1.08999 * 109.47271 * 239.99474 * 2 1 3 25 25 H 1.08998 * 109.46813 * 120.00064 * 2 1 3 26 26 H 1.09004 * 109.46673 * 59.99502 * 4 3 2 27 27 H 1.08992 * 109.46932 * 300.00037 * 4 3 2 28 28 H 0.96696 * 113.99475 * 300.00146 * 7 5 4 29 29 H 1.08996 * 109.47577 * 65.00260 * 8 5 4 30 30 H 1.09005 * 109.47176 * 304.99898 * 8 5 4 31 31 H 0.97000 * 119.99709 * 174.98450 * 13 12 10 32 32 H 1.09000 * 115.54395 * 339.43733 * 18 9 8 33 33 H 1.08997 * 117.50068 * 359.97438 * 19 18 9 34 34 H 1.08994 * 117.49615 * 145.01775 * 19 18 9 35 35 H 1.08996 * 117.50098 * 214.97880 * 20 18 9 36 36 H 1.09003 * 117.50240 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 1 3.3493 3.4418 0.8412 7 8 3.3987 3.5447 -1.2217 8 6 5.3453 3.0606 0.1262 9 7 5.7133 4.4735 0.2456 10 6 5.7934 5.0581 1.4814 11 1 5.4561 6.0746 1.6209 12 6 6.3080 4.3443 2.5550 13 7 7.0752 3.2964 2.3412 14 14 5.9116 4.8707 4.3028 15 1 5.0362 6.0699 4.2721 16 1 5.2131 3.7652 5.0064 17 1 7.1710 5.1960 5.0194 18 6 5.9957 5.2612 -0.9569 19 6 6.6783 6.6175 -0.7689 20 6 5.2002 6.5524 -1.1586 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8341 0.9763 -0.8892 27 1 3.8333 0.9767 0.8908 28 1 3.7838 3.1462 -2.0141 29 1 5.8188 2.6354 -0.7587 30 1 5.6808 2.5216 1.0123 31 1 7.4939 2.8413 3.0886 32 1 6.2549 4.6857 -1.8456 33 1 6.9170 6.9240 0.2495 34 1 7.3870 6.9345 -1.5340 35 1 4.9365 6.8268 -2.1799 36 1 4.4665 6.8158 -0.3967 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609600265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:18 Heat of formation + Delta-G solvation = -55.554232 kcal Electronic energy + Delta-G solvation = -16709.754828 eV Core-core repulsion = 14002.632036 eV Total energy + Delta-G solvation = -2707.122792 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.21208 -37.05694 -35.71407 -33.31335 -31.43598 -30.69002 -28.65065 -25.30613 -23.41875 -22.62512 -21.23906 -20.79281 -19.83733 -17.01659 -16.15432 -15.89759 -15.48608 -15.29980 -14.49876 -14.34153 -13.86914 -13.70471 -12.83237 -12.75227 -12.55754 -12.16320 -11.78021 -11.26310 -11.13206 -11.08809 -10.82555 -10.76531 -10.51501 -10.44192 -10.04653 -9.98885 -9.53553 -9.37592 -9.26854 -9.10054 -8.47457 -6.44966 -5.85509 -3.42101 3.31270 3.40563 3.44804 3.91254 4.41796 5.04500 5.09523 5.12552 5.23229 5.30564 5.35749 5.43224 5.57539 5.68815 5.76799 5.93787 5.98277 5.99953 6.13745 6.17248 6.29129 6.33197 6.43454 6.60449 6.69955 7.03135 7.12078 7.26402 7.39673 7.51731 7.80426 8.42479 8.48778 9.12743 9.75024 10.32874 11.14176 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.008701 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.815041 B = 3217.293504 C = 4138.367159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.381 6.381 4 C 0.033 3.967 5 C 0.088 3.912 6 H 0.101 0.899 7 O -0.549 6.549 8 C 0.126 3.874 9 N -0.542 5.542 10 C -0.256 4.256 11 H 0.063 0.937 12 C 0.013 3.987 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.288 1.288 18 C 0.137 3.863 19 C -0.202 4.202 20 C -0.216 4.216 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.355 0.645 29 H 0.030 0.970 30 H 0.104 0.896 31 H 0.256 0.744 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 -5.449 -5.478 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.300 6.300 4 C -0.044 4.044 5 C 0.027 3.973 6 H 0.119 0.881 7 O -0.352 6.352 8 C -0.001 4.001 9 N -0.257 5.257 10 C -0.386 4.386 11 H 0.080 0.920 12 C -0.187 4.187 13 N -0.534 5.534 14 Si 0.728 3.272 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.215 1.215 18 C 0.027 3.973 19 C -0.241 4.241 20 C -0.257 4.257 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.200 0.800 29 H 0.048 0.952 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.686 -5.088 -4.899 9.726 hybrid contribution 0.386 -0.411 0.633 0.848 sum -6.300 -5.499 -4.266 9.387 Atomic orbital electron populations 1.21721 0.94187 1.01665 1.03094 1.22415 0.95351 0.84979 0.99561 1.87991 1.21633 1.25092 1.95292 1.23401 0.80771 1.00223 1.00030 1.22928 0.98428 0.88407 0.87548 0.88129 1.86633 1.72093 1.61477 1.14989 1.21490 0.89294 0.87181 1.02163 1.43150 1.75570 1.06378 1.00620 1.19011 1.35939 0.99050 0.84563 0.91950 1.25234 0.96430 0.98211 0.98839 1.69896 1.30402 1.22583 1.30493 0.86281 0.77992 0.78360 0.84586 1.19919 1.21293 1.21509 1.20988 0.99358 0.85949 0.90980 1.23116 0.94386 1.04703 1.01917 1.23246 0.94134 1.08298 0.99994 0.91958 0.91580 0.91941 0.93964 0.93835 0.93900 0.92706 0.80033 0.95151 0.87839 0.93345 0.89849 0.88493 0.90995 0.91104 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.29 16 2 C 0.05 0.72 6.66 37.16 0.25 0.97 16 3 O -0.38 -6.67 10.31 -40.07 -0.41 -7.08 16 4 C 0.03 0.57 5.57 37.16 0.21 0.78 16 5 C 0.09 1.79 3.49 -26.73 -0.09 1.70 16 6 H 0.10 2.35 8.14 -51.93 -0.42 1.93 16 7 O -0.55 -10.77 12.86 -40.07 -0.52 -11.28 16 8 C 0.13 2.81 4.99 -4.04 -0.02 2.79 16 9 N -0.54 -13.30 2.74 -165.67 -0.45 -13.75 16 10 C -0.26 -6.88 8.04 -15.06 -0.12 -7.01 16 11 H 0.06 1.72 7.24 -52.49 -0.38 1.34 16 12 C 0.01 0.35 4.97 -17.43 -0.09 0.26 16 13 N -0.89 -24.81 11.45 55.49 0.64 -24.17 16 14 Si 0.90 21.37 29.60 -169.99 -5.03 16.34 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.14 2.98 6.21 -67.94 -0.42 2.56 16 19 C -0.20 -4.19 9.81 -26.73 -0.26 -4.45 16 20 C -0.22 -4.39 10.09 -26.74 -0.27 -4.65 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.36 5.60 9.04 45.56 0.41 6.01 16 29 H 0.03 0.62 8.04 -51.93 -0.42 0.21 16 30 H 0.10 2.59 5.52 -51.93 -0.29 2.31 16 31 H 0.26 6.87 8.32 -40.82 -0.34 6.54 16 32 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 33 H 0.10 2.21 6.95 -51.93 -0.36 1.85 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.86 8.02 -51.93 -0.42 1.44 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -29.54 301.06 -6.91 -36.45 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.23 Total: 7.31 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.44 Total: -8.35 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.18 Total: -37.92 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.93 Total: -18.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.54 -6.91 -36.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609600265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.100 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds