Wall clock time and date at job start Sun Mar 29 2020 21:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42891 * 109.47297 * 2 1 4 4 C 1.42902 * 114.00412 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47298 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47285 * 55.00451 * 5 4 3 7 7 O 1.42903 * 109.47582 * 295.00164 * 5 4 3 8 8 C 1.52999 * 109.46933 * 175.00225 * 5 4 3 9 9 N 1.46501 * 109.47308 * 185.00210 * 8 5 4 10 10 C 1.36938 * 119.99973 * 89.99844 * 9 8 5 11 11 H 1.08002 * 120.00339 * 218.14931 * 10 9 8 12 12 C 1.38816 * 120.00448 * 38.14545 * 10 9 8 13 13 N 1.31621 * 119.99209 * 20.54419 * 12 10 9 14 14 Si 1.86789 * 120.00444 * 200.54432 * 12 10 9 15 15 H 1.48502 * 109.47313 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47354 * 119.99797 * 14 12 10 17 17 H 1.48504 * 109.47161 * 239.99900 * 14 12 10 18 18 C 1.46499 * 120.00334 * 270.00234 * 9 8 5 19 19 C 1.52998 * 117.50139 * 193.73011 * 18 9 8 20 20 C 1.52993 * 117.50133 * 125.10532 * 18 9 8 21 21 H 1.08997 * 109.46992 * 60.00457 * 1 2 3 22 22 H 1.09002 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46817 * 300.00286 * 1 2 3 24 24 H 1.08999 * 109.47271 * 239.99474 * 2 1 3 25 25 H 1.08998 * 109.46813 * 120.00064 * 2 1 3 26 26 H 1.09004 * 109.46673 * 59.99502 * 4 3 2 27 27 H 1.08992 * 109.46932 * 300.00037 * 4 3 2 28 28 H 0.96696 * 113.99475 * 300.00146 * 7 5 4 29 29 H 1.08996 * 109.47577 * 65.00260 * 8 5 4 30 30 H 1.09005 * 109.47176 * 304.99898 * 8 5 4 31 31 H 0.97000 * 119.99709 * 174.98450 * 13 12 10 32 32 H 1.09000 * 115.54395 * 339.43733 * 18 9 8 33 33 H 1.08997 * 117.50068 * 359.97438 * 19 18 9 34 34 H 1.08994 * 117.49615 * 145.01775 * 19 18 9 35 35 H 1.08996 * 117.50098 * 214.97880 * 20 18 9 36 36 H 1.09003 * 117.50240 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 1 3.3493 3.4418 0.8412 7 8 3.3987 3.5447 -1.2217 8 6 5.3453 3.0606 0.1262 9 7 5.7133 4.4735 0.2456 10 6 5.7934 5.0581 1.4814 11 1 5.4561 6.0746 1.6209 12 6 6.3080 4.3443 2.5550 13 7 7.0752 3.2964 2.3412 14 14 5.9116 4.8707 4.3028 15 1 5.0362 6.0699 4.2721 16 1 5.2131 3.7652 5.0064 17 1 7.1710 5.1960 5.0194 18 6 5.9957 5.2612 -0.9569 19 6 6.6783 6.6175 -0.7689 20 6 5.2002 6.5524 -1.1586 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8341 0.9763 -0.8892 27 1 3.8333 0.9767 0.8908 28 1 3.7838 3.1462 -2.0141 29 1 5.8188 2.6354 -0.7587 30 1 5.6808 2.5216 1.0123 31 1 7.4939 2.8413 3.0886 32 1 6.2549 4.6857 -1.8456 33 1 6.9170 6.9240 0.2495 34 1 7.3870 6.9345 -1.5340 35 1 4.9365 6.8268 -2.1799 36 1 4.4665 6.8158 -0.3967 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609600265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:17 Heat of formation + Delta-G solvation = -75.640853 kcal Electronic energy + Delta-G solvation = -16710.625850 eV Core-core repulsion = 14002.632036 eV Total energy + Delta-G solvation = -2707.993813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.68399 -38.62821 -37.25053 -35.17893 -32.83128 -32.26578 -30.22842 -27.13813 -25.11029 -23.66135 -22.89058 -22.39187 -21.66531 -18.71428 -17.61787 -17.36394 -17.11765 -16.86732 -16.21517 -15.90127 -15.48810 -15.34066 -14.42112 -14.09711 -13.87141 -13.54488 -13.22061 -13.06055 -12.72396 -12.67571 -12.36004 -12.22960 -12.19806 -12.13950 -11.86502 -11.68984 -11.30154 -10.96307 -10.73015 -10.55054 -10.45271 -8.40222 -7.85330 -5.47257 1.39797 1.44438 1.53930 2.43212 2.69171 3.14054 3.49767 3.55438 3.74096 4.10124 4.15347 4.21341 4.35082 4.41323 4.48869 4.50202 4.52955 4.60013 4.66839 4.70119 4.90121 4.99390 5.02431 5.09007 5.25332 5.34661 5.42425 5.55702 5.58627 5.69894 6.30079 6.45479 7.04710 7.14983 7.83594 8.34352 9.08446 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.008701 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.815041 B = 3217.293504 C = 4138.367159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.407 6.407 4 C 0.043 3.957 5 C 0.104 3.896 6 H 0.060 0.940 7 O -0.559 6.559 8 C 0.129 3.871 9 N -0.560 5.560 10 C -0.261 4.261 11 H 0.046 0.954 12 C -0.029 4.029 13 N -0.914 5.914 14 Si 0.951 3.049 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.116 3.884 19 C -0.199 4.199 20 C -0.200 4.200 21 H 0.059 0.941 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.375 0.625 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.255 0.745 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -6.135 -6.764 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.327 6.327 4 C -0.034 4.034 5 C 0.042 3.958 6 H 0.078 0.922 7 O -0.365 6.365 8 C 0.003 3.997 9 N -0.276 5.276 10 C -0.391 4.391 11 H 0.063 0.937 12 C -0.226 4.226 13 N -0.558 5.558 14 Si 0.779 3.221 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.212 1.212 18 C 0.008 3.992 19 C -0.238 4.238 20 C -0.241 4.241 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.222 0.778 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.156 -5.776 -6.210 11.097 hybrid contribution 0.489 -0.188 0.951 1.086 sum -6.668 -5.964 -5.259 10.377 Atomic orbital electron populations 1.21751 0.92715 1.03422 1.02490 1.22716 0.96605 0.83157 1.00709 1.87944 1.21364 1.27911 1.95519 1.23163 0.81256 0.97850 1.01136 1.22439 0.96461 0.90080 0.86796 0.92196 1.86579 1.72298 1.62088 1.15504 1.21415 0.90703 0.86023 1.01596 1.43334 1.76264 1.07261 1.00748 1.19020 1.35379 0.98562 0.86183 0.93677 1.25773 0.96660 0.98611 1.01581 1.69989 1.31300 1.23413 1.31071 0.85466 0.77640 0.77831 0.81120 1.20035 1.21159 1.21207 1.21295 1.00592 0.86497 0.90849 1.23106 0.95421 1.03929 1.01351 1.23160 0.93214 1.06868 1.00828 0.92233 0.88640 0.92872 0.92162 0.93259 0.91177 0.93117 0.77806 0.93295 0.90611 0.93506 0.87425 0.91341 0.87885 0.87964 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 10.28 71.98 0.74 -2.25 16 2 C 0.04 1.09 6.66 71.98 0.48 1.57 16 3 O -0.41 -13.80 10.31 -144.35 -1.49 -15.29 16 4 C 0.04 1.45 5.57 71.98 0.40 1.85 16 5 C 0.10 4.19 3.49 30.59 0.11 4.30 16 6 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 7 O -0.56 -21.19 12.86 -144.35 -1.86 -23.05 16 8 C 0.13 5.75 4.99 86.38 0.43 6.19 16 9 N -0.56 -27.55 2.74 -678.04 -1.86 -29.41 16 10 C -0.26 -14.33 8.04 84.03 0.68 -13.65 16 11 H 0.05 2.59 7.24 -2.91 -0.02 2.56 16 12 C -0.03 -1.57 4.97 84.86 0.42 -1.14 16 13 N -0.91 -51.55 11.45 21.65 0.25 -51.30 16 14 Si 0.95 44.71 29.60 68.60 2.03 46.74 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 C 0.12 4.91 6.21 44.99 0.28 5.19 16 19 C -0.20 -8.00 9.81 30.59 0.30 -7.70 16 20 C -0.20 -7.83 10.09 30.59 0.31 -7.53 16 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 28 H 0.37 10.85 9.04 -74.06 -0.67 10.18 16 29 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 30 H 0.08 3.85 5.52 -2.38 -0.01 3.84 16 31 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 32 H 0.11 4.00 8.10 -2.39 -0.02 3.98 16 33 H 0.07 3.15 6.95 -2.39 -0.02 3.13 16 34 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.06 2.55 8.02 -2.39 -0.02 2.53 16 Total: -1.00 -63.64 301.06 1.59 -62.05 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.38 Total: 23.45 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 4.14 Total: -13.19 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.61 Total: -80.71 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -3.34 Total: -38.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -63.64 1.59 -62.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609600265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.595 kcal (2) G-P(sol) polarization free energy of solvation -63.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds