Wall clock time and date at job start Sun Mar 29 2020 21:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00136 * 2 1 4 4 H 1.48504 * 109.46848 * 239.99646 * 3 2 1 5 5 H 1.48500 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47619 * 119.99400 * 3 2 1 7 7 C 1.38984 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99994 * 180.02562 * 7 2 1 9 9 N 1.36961 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99624 * 179.97438 * 9 7 2 11 11 O 1.21626 * 120.00153 * 0.02562 * 10 9 7 12 12 C 1.47415 * 119.99812 * 179.97438 * 10 9 7 13 13 C 1.41228 * 126.37753 * 0.02562 * 12 10 9 14 14 C 1.37993 * 106.86878 * 179.97438 * 13 12 10 15 15 C 1.41395 * 131.97009 * 179.97438 * 14 13 12 16 16 C 1.35741 * 119.33134 * 180.02562 * 15 14 13 17 17 C 1.40831 * 119.72084 * 359.93460 * 16 15 14 18 18 C 1.34536 * 120.58313 * 0.10854 * 17 16 15 19 19 N 1.37435 * 120.74769 * 359.91264 * 18 17 16 20 20 C 1.35144 * 131.28308 * 180.02562 * 19 18 17 21 21 H 0.97000 * 119.99679 * 0.02562 * 1 2 3 22 22 H 0.96996 * 119.99919 * 359.97438 * 9 7 2 23 23 H 1.07997 * 126.56537 * 359.97438 * 13 12 10 24 24 H 1.07995 * 120.33527 * 359.74492 * 15 14 13 25 25 H 1.08001 * 120.13605 * 179.97438 * 16 15 14 26 26 H 1.08002 * 119.70460 * 180.02562 * 17 16 15 27 27 H 1.08003 * 119.62878 * 179.97438 * 18 17 16 28 28 H 1.08004 * 125.61396 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2036 0.0005 8 1 3.0890 -1.2036 0.0010 9 7 1.3241 -2.3897 0.0005 10 6 1.9981 -3.5569 0.0005 11 8 3.2143 -3.5569 0.0010 12 6 1.2610 -4.8336 0.0011 13 6 -0.1426 -4.9905 0.0012 14 6 -0.3938 -6.3473 0.0012 15 6 -1.5997 -7.0857 0.0017 16 6 -1.5488 -8.4421 0.0021 17 6 -0.3005 -9.0940 0.0006 18 6 0.8424 -8.3842 0.0010 19 7 0.8161 -7.0101 0.0010 20 6 1.8144 -6.0992 0.0009 21 1 -0.4850 0.8401 -0.0004 22 1 0.3542 -2.3897 0.0005 23 1 -0.8783 -4.1999 0.0012 24 1 -2.5516 -6.5756 0.0064 25 1 -2.4619 -9.0190 0.0030 26 1 -0.2603 -10.1733 0.0005 27 1 1.7913 -8.9000 0.0002 28 1 2.8709 -6.3239 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610114301.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:01 Heat of formation + Delta-G solvation = 35.223191 kcal Electronic energy + Delta-G solvation = -14758.715570 eV Core-core repulsion = 12161.579097 eV Total energy + Delta-G solvation = -2597.136473 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.82197 -37.98612 -36.03363 -33.90860 -32.84816 -31.20235 -29.60598 -27.44621 -25.35184 -23.44040 -21.86814 -21.40652 -18.81598 -17.93248 -17.32978 -16.11864 -15.90302 -15.11920 -14.87625 -14.42962 -14.24075 -13.89678 -13.34170 -13.18526 -12.44241 -12.08356 -11.64919 -11.49493 -11.48211 -11.16115 -11.00771 -10.43254 -10.21903 -10.20755 -9.51438 -8.46052 -8.14164 -7.94409 -7.11749 -6.44387 -3.79386 0.95584 1.59411 2.75646 2.94728 3.26306 3.26909 3.31275 3.68178 4.18106 4.50789 4.60137 4.88419 4.96014 5.08569 5.22018 5.40225 5.43224 5.67472 5.81814 5.94964 6.14072 6.19634 6.35330 6.55968 6.72597 7.12103 7.18481 7.53269 7.56219 8.07944 8.63265 9.16866 9.56428 10.11097 10.73068 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.058237 B = 0.005629 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.680213 B = 4972.987155 C = 5443.825397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.296 4.296 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.498 3.502 11 O -0.603 6.603 12 C -0.127 4.127 13 C -0.170 4.170 14 C 0.017 3.983 15 C -0.071 4.071 16 C -0.147 4.147 17 C -0.149 4.149 18 C 0.045 3.955 19 N -0.345 5.345 20 C -0.007 4.007 21 H 0.274 0.726 22 H 0.395 0.605 23 H 0.151 0.849 24 H 0.139 0.861 25 H 0.128 0.872 26 H 0.139 0.861 27 H 0.157 0.843 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -14.584 0.004 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.180 4.180 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.426 4.426 8 H 0.123 0.877 9 N -0.178 5.178 10 C 0.286 3.714 11 O -0.490 6.490 12 C -0.135 4.135 13 C -0.196 4.196 14 C -0.086 4.086 15 C -0.090 4.090 16 C -0.167 4.167 17 C -0.169 4.169 18 C -0.074 4.074 19 N -0.009 5.009 20 C -0.140 4.140 21 H 0.084 0.916 22 H 0.229 0.771 23 H 0.169 0.831 24 H 0.157 0.843 25 H 0.146 0.854 26 H 0.157 0.843 27 H 0.174 0.826 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.900 -14.593 0.005 15.106 hybrid contribution -0.219 0.738 -0.001 0.770 sum -4.119 -13.855 0.004 14.455 Atomic orbital electron populations 1.69611 1.06029 1.28513 1.49310 1.25332 0.95672 0.99895 0.97099 0.85869 0.78773 0.80134 0.79182 1.19769 1.20895 1.19764 1.19750 0.93589 0.82201 1.47038 0.87656 1.41741 1.09462 1.04395 1.62207 1.16980 0.86837 0.82469 0.85147 1.90588 1.13345 1.87266 1.57814 1.20060 0.93093 0.93683 1.06617 1.21348 0.95504 0.93094 1.09617 1.18776 0.85236 0.92080 1.12507 1.20637 0.96007 0.93695 0.98702 1.20809 0.97613 0.94265 1.04013 1.20580 0.91514 1.00168 1.04676 1.21596 1.00674 0.80999 1.04142 1.41298 1.07721 1.04769 1.47111 1.21969 0.92960 0.86463 1.12581 0.91614 0.77091 0.83146 0.84301 0.85423 0.84302 0.82605 0.80606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 13.05 55.50 0.72 -23.77 15 2 C 0.02 0.61 5.50 -17.46 -0.10 0.52 15 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15 7 C -0.30 -8.46 9.68 -14.98 -0.15 -8.60 15 8 H 0.11 3.11 7.15 -52.48 -0.38 2.74 15 9 N -0.54 -14.62 5.27 -11.95 -0.06 -14.68 15 10 C 0.50 12.95 7.77 -12.52 -0.10 12.85 15 11 O -0.60 -17.43 16.47 5.25 0.09 -17.35 15 12 C -0.13 -2.72 6.12 -105.06 -0.64 -3.37 15 13 C -0.17 -3.20 10.44 -38.54 -0.40 -3.60 15 14 C 0.02 0.28 6.70 -84.00 -0.56 -0.28 15 15 C -0.07 -0.92 10.11 -39.27 -0.40 -1.32 15 16 C -0.15 -1.59 10.07 -39.50 -0.40 -1.98 15 17 C -0.15 -1.52 9.97 -39.91 -0.40 -1.92 15 18 C 0.05 0.54 10.89 -16.35 -0.18 0.36 15 19 N -0.34 -5.50 2.92 -60.39 -0.18 -5.67 15 20 C -0.01 -0.13 11.37 -16.13 -0.18 -0.31 15 21 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 22 H 0.40 10.12 6.87 -40.82 -0.28 9.84 15 23 H 0.15 2.65 7.53 -52.49 -0.40 2.26 15 24 H 0.14 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.13 1.01 8.06 -52.49 -0.42 0.59 15 26 H 0.14 0.96 8.06 -52.49 -0.42 0.53 15 27 H 0.16 1.36 8.06 -52.48 -0.42 0.94 15 28 H 0.18 2.95 8.06 -52.48 -0.42 2.52 15 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -32.82 257.35 -6.37 -39.20 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -2.30 Total: 9.96 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.50 Total: -7.66 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.48 Total: -44.13 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.09 Total: -17.35 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.82 -6.37 -39.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610114301.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.422 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds