Wall clock time and date at job start Sun Mar 29 2020 21:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00136 * 2 1 4 4 H 1.48504 * 109.46848 * 239.99646 * 3 2 1 5 5 H 1.48500 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47619 * 119.99400 * 3 2 1 7 7 C 1.38984 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99994 * 180.02562 * 7 2 1 9 9 N 1.36961 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99624 * 179.97438 * 9 7 2 11 11 O 1.21626 * 120.00153 * 0.02562 * 10 9 7 12 12 C 1.47415 * 119.99812 * 179.97438 * 10 9 7 13 13 C 1.41228 * 126.37753 * 0.02562 * 12 10 9 14 14 C 1.37993 * 106.86878 * 179.97438 * 13 12 10 15 15 C 1.41395 * 131.97009 * 179.97438 * 14 13 12 16 16 C 1.35741 * 119.33134 * 180.02562 * 15 14 13 17 17 C 1.40831 * 119.72084 * 359.93460 * 16 15 14 18 18 C 1.34536 * 120.58313 * 0.10854 * 17 16 15 19 19 N 1.37435 * 120.74769 * 359.91264 * 18 17 16 20 20 C 1.35144 * 131.28308 * 180.02562 * 19 18 17 21 21 H 0.97000 * 119.99679 * 0.02562 * 1 2 3 22 22 H 0.96996 * 119.99919 * 359.97438 * 9 7 2 23 23 H 1.07997 * 126.56537 * 359.97438 * 13 12 10 24 24 H 1.07995 * 120.33527 * 359.74492 * 15 14 13 25 25 H 1.08001 * 120.13605 * 179.97438 * 16 15 14 26 26 H 1.08002 * 119.70460 * 180.02562 * 17 16 15 27 27 H 1.08003 * 119.62878 * 179.97438 * 18 17 16 28 28 H 1.08004 * 125.61396 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2036 0.0005 8 1 3.0890 -1.2036 0.0010 9 7 1.3241 -2.3897 0.0005 10 6 1.9981 -3.5569 0.0005 11 8 3.2143 -3.5569 0.0010 12 6 1.2610 -4.8336 0.0011 13 6 -0.1426 -4.9905 0.0012 14 6 -0.3938 -6.3473 0.0012 15 6 -1.5997 -7.0857 0.0017 16 6 -1.5488 -8.4421 0.0021 17 6 -0.3005 -9.0940 0.0006 18 6 0.8424 -8.3842 0.0010 19 7 0.8161 -7.0101 0.0010 20 6 1.8144 -6.0992 0.0009 21 1 -0.4850 0.8401 -0.0004 22 1 0.3542 -2.3897 0.0005 23 1 -0.8783 -4.1999 0.0012 24 1 -2.5516 -6.5756 0.0064 25 1 -2.4619 -9.0190 0.0030 26 1 -0.2603 -10.1733 0.0005 27 1 1.7913 -8.9000 0.0002 28 1 2.8709 -6.3239 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610114301.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:01 Heat of formation + Delta-G solvation = 13.760053 kcal Electronic energy + Delta-G solvation = -14759.646282 eV Core-core repulsion = 12161.579097 eV Total energy + Delta-G solvation = -2598.067185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.06923 -39.93823 -37.21768 -36.01534 -34.04849 -33.22999 -30.91336 -28.63184 -27.30484 -24.74914 -23.33422 -22.62746 -20.63526 -19.90769 -18.59123 -17.47165 -17.22518 -16.55907 -16.40645 -15.96594 -15.81176 -15.23012 -15.18586 -14.73969 -14.10863 -13.55759 -13.34830 -12.95685 -12.80223 -12.45526 -12.37863 -12.13973 -12.11057 -11.56694 -11.36840 -10.55672 -10.09217 -9.49165 -8.51630 -8.29387 -5.98145 -0.08676 0.44041 1.18905 1.40839 1.51407 1.53288 1.76332 2.29790 2.56934 2.65662 3.26240 3.31261 3.70614 3.95154 3.97744 4.14898 4.31221 4.37289 4.64228 4.68265 4.96051 5.00842 5.28834 5.36317 5.41799 5.48025 5.71815 5.91863 6.03029 6.37611 6.54991 7.05141 7.49334 8.05306 8.66121 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.058237 B = 0.005629 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.680213 B = 4972.987155 C = 5443.825397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.012 4.012 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.554 5.554 10 C 0.496 3.504 11 O -0.643 6.643 12 C -0.169 4.169 13 C -0.201 4.201 14 C 0.026 3.974 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.131 4.131 18 C 0.022 3.978 19 N -0.341 5.341 20 C -0.012 4.012 21 H 0.281 0.719 22 H 0.397 0.603 23 H 0.147 0.853 24 H 0.159 0.841 25 H 0.170 0.830 26 H 0.187 0.813 27 H 0.189 0.811 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 -17.336 0.005 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.213 4.213 3 Si 0.824 3.176 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.188 5.188 10 C 0.286 3.714 11 O -0.533 6.533 12 C -0.176 4.176 13 C -0.226 4.226 14 C -0.079 4.079 15 C -0.120 4.120 16 C -0.138 4.138 17 C -0.151 4.151 18 C -0.095 4.095 19 N -0.005 5.005 20 C -0.146 4.146 21 H 0.091 0.909 22 H 0.231 0.769 23 H 0.165 0.835 24 H 0.176 0.824 25 H 0.187 0.813 26 H 0.204 0.796 27 H 0.206 0.794 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.436 -17.378 0.006 18.209 hybrid contribution 0.098 1.215 -0.001 1.219 sum -5.338 -16.163 0.005 17.022 Atomic orbital electron populations 1.69683 1.07079 1.29800 1.48949 1.26215 0.96651 1.02742 0.95666 0.84878 0.77747 0.75833 0.79182 1.19409 1.19059 1.19400 1.19777 0.93045 0.83806 1.50296 0.89824 1.41758 1.09451 1.04509 1.63051 1.17714 0.86676 0.83820 0.83236 1.90519 1.15188 1.88220 1.59354 1.19704 0.94396 0.92608 1.10940 1.21285 0.94265 0.94726 1.12307 1.19125 0.86824 0.91448 1.10538 1.20963 0.95296 0.94903 1.00829 1.21444 0.99659 0.93476 0.99265 1.21277 0.90362 1.02431 1.01010 1.22427 1.03413 0.79113 1.04578 1.41456 1.06753 1.06210 1.46046 1.21903 0.93779 0.86127 1.12781 0.90903 0.76850 0.83544 0.82389 0.81300 0.79602 0.79433 0.79777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.26 13.05 21.67 0.28 -50.97 15 2 C -0.01 -0.68 5.50 84.94 0.47 -0.21 15 3 Si 1.00 43.98 29.55 68.60 2.03 46.00 15 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 7 C -0.34 -20.54 9.68 84.07 0.81 -19.73 15 8 H 0.08 5.29 7.15 -2.91 -0.02 5.27 15 9 N -0.55 -31.82 5.27 -309.97 -1.63 -33.45 15 10 C 0.50 27.68 7.77 86.66 0.67 28.35 15 11 O -0.64 -39.72 16.47 -4.11 -0.07 -39.79 15 12 C -0.17 -7.67 6.12 -20.15 -0.12 -7.80 15 13 C -0.20 -7.93 10.44 22.95 0.24 -7.69 15 14 C 0.03 0.83 6.70 38.90 0.26 1.10 15 15 C -0.10 -2.31 10.11 22.47 0.23 -2.08 15 16 C -0.12 -1.88 10.07 22.33 0.22 -1.65 15 17 C -0.13 -1.89 9.97 22.06 0.22 -1.67 15 18 C 0.02 0.44 10.89 82.97 0.90 1.35 15 19 N -0.34 -10.42 2.92 -344.97 -1.01 -11.43 15 20 C -0.01 -0.47 11.37 84.16 0.96 0.49 15 21 H 0.28 14.57 8.31 -92.71 -0.77 13.80 15 22 H 0.40 21.84 6.87 -92.71 -0.64 21.21 15 23 H 0.15 5.59 7.53 -2.91 -0.02 5.57 15 24 H 0.16 2.91 8.06 -2.91 -0.02 2.89 15 25 H 0.17 1.41 8.06 -2.91 -0.02 1.39 15 26 H 0.19 1.06 8.06 -2.91 -0.02 1.04 15 27 H 0.19 2.45 8.06 -2.91 -0.02 2.43 15 28 H 0.19 6.37 8.06 -2.91 -0.02 6.35 15 Total: -1.00 -76.24 257.35 5.02 -71.22 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.55 Total: 27.97 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.86 Total: -9.55 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.36 Total: -95.86 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.07 Total: -39.79 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -76.24 5.02 -71.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610114301.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.984 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds