Wall clock time and date at job start Sun Mar 29 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99711 * 2 1 4 4 H 1.08006 * 120.00445 * 38.89640 * 3 2 1 5 5 C 1.38818 * 119.99457 * 218.90040 * 3 2 1 6 6 N 1.31615 * 120.00313 * 27.06274 * 5 3 2 7 7 Si 1.86807 * 119.99704 * 207.06279 * 5 3 2 8 8 H 1.48504 * 109.46827 * 90.00066 * 7 5 3 9 9 H 1.48491 * 109.47198 * 330.00114 * 7 5 3 10 10 H 1.48498 * 109.47025 * 209.99895 * 7 5 3 11 11 C 1.46497 * 120.00066 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47252 * 270.00824 * 11 2 1 13 13 O 1.42901 * 109.47562 * 64.99739 * 12 11 2 14 14 C 1.42895 * 114.00059 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47167 * 180.02562 * 14 13 12 16 16 H 1.09009 * 109.82381 * 305.56685 * 15 14 13 17 17 C 1.54379 * 109.83418 * 184.58842 * 15 14 13 18 18 C 1.55309 * 102.25355 * 219.13031 * 17 15 14 19 19 C 1.54941 * 100.94151 * 34.12979 * 18 17 15 20 20 O 1.43233 * 109.83286 * 66.45220 * 15 14 13 21 21 H 1.09009 * 109.47008 * 95.13655 * 1 2 3 22 22 H 1.08993 * 109.47689 * 215.13204 * 1 2 3 23 23 H 1.09002 * 109.47403 * 335.14199 * 1 2 3 24 24 H 0.97005 * 120.00008 * 6.11441 * 6 5 3 25 25 H 1.09004 * 109.46725 * 30.00433 * 11 2 1 26 26 H 1.08993 * 109.47067 * 150.00084 * 11 2 1 27 27 H 1.09005 * 109.47058 * 185.00167 * 12 11 2 28 28 H 1.08999 * 109.46846 * 304.99662 * 12 11 2 29 29 H 1.08999 * 109.47079 * 299.99904 * 14 13 12 30 30 H 1.09000 * 109.47048 * 59.99912 * 14 13 12 31 31 H 1.09005 * 110.84576 * 337.31698 * 17 15 14 32 32 H 1.08997 * 110.85253 * 100.93565 * 17 15 14 33 33 H 1.08996 * 111.12011 * 276.20903 * 18 17 15 34 34 H 1.08999 * 111.16104 * 152.06543 * 18 17 15 35 35 H 1.08998 * 110.31059 * 204.63733 * 19 18 17 36 36 H 1.09001 * 110.39045 * 82.51420 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7892 2.0176 0.5873 5 6 3.3069 1.3192 -0.7550 6 7 3.4761 0.5864 -1.8351 7 14 4.6242 2.5385 -0.2378 8 1 5.5901 1.8685 0.6696 9 1 3.9913 3.6807 0.4693 10 1 5.3384 3.0356 -1.4411 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 8 1.2059 -1.9927 2.0822 14 6 1.3321 -2.4151 3.4414 15 6 -0.0568 -2.6892 4.0215 16 1 -0.6915 -1.8125 3.8912 17 6 0.0608 -3.0346 5.5215 18 6 -0.9918 -4.1652 5.6829 19 6 -0.8772 -4.8721 4.3090 20 8 -0.6448 -3.8168 3.3625 21 1 -0.3633 -0.0920 -1.0236 22 1 -0.3634 -0.8404 0.5913 23 1 -0.3634 0.9325 0.4320 24 1 2.7568 0.0187 -2.1537 25 1 1.6084 -2.0285 -0.5130 26 1 3.1499 -1.1386 -0.5133 27 1 3.0731 -2.6058 1.4449 28 1 2.9641 -0.9123 1.9820 29 1 1.9298 -3.3256 3.4850 30 1 1.8204 -1.6319 4.0214 31 1 1.0605 -3.3987 5.7585 32 1 -0.1964 -2.1741 6.1391 33 1 -1.9903 -3.7539 5.8311 34 1 -0.7230 -4.8400 6.4956 35 1 -1.8046 -5.3941 4.0735 36 1 -0.0404 -5.5705 4.3099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610161262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:00 Heat of formation + Delta-G solvation = -100.007682 kcal Electronic energy + Delta-G solvation = -16540.913509 eV Core-core repulsion = 13831.863071 eV Total energy + Delta-G solvation = -2709.050438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54706 -38.89439 -37.23096 -33.37659 -33.13322 -31.87024 -30.16885 -27.39548 -26.31922 -24.86454 -22.65028 -22.42108 -21.92649 -19.30665 -18.14752 -17.40342 -17.01819 -16.71278 -16.18042 -15.87553 -15.40050 -15.30488 -15.14002 -14.48492 -14.14096 -13.43821 -13.30024 -13.12315 -12.82468 -12.66712 -12.58904 -12.48895 -12.12376 -12.09132 -11.97240 -11.88925 -11.71072 -11.44564 -10.52315 -10.47882 -10.44654 -8.89853 -8.18818 -5.56594 1.58360 1.65205 1.84402 2.64695 2.68608 2.98505 3.15100 3.55108 3.60323 3.89301 3.93390 4.14233 4.20995 4.35396 4.39565 4.40628 4.48736 4.55764 4.67326 4.73535 4.79314 4.86747 4.90757 4.91580 4.97469 5.02269 5.07579 5.19298 5.24012 5.90304 6.09368 6.34932 6.40473 7.08678 7.73275 8.23252 8.91096 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.046166 B = 0.005591 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.363089 B = 5006.992331 C = 5208.158113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.612 5.612 3 C -0.364 4.364 4 H 0.037 0.963 5 C -0.064 4.064 6 N -0.925 5.925 7 Si 1.115 2.885 8 H -0.278 1.278 9 H -0.275 1.275 10 H -0.290 1.290 11 C 0.146 3.854 12 C 0.062 3.938 13 O -0.392 6.392 14 C 0.046 3.954 15 C 0.081 3.919 16 H 0.071 0.929 17 C -0.141 4.141 18 C -0.145 4.145 19 C 0.034 3.966 20 O -0.403 6.403 21 H -0.007 1.007 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.253 0.747 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 -9.804 16.823 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.336 5.336 3 C -0.494 4.494 4 H 0.055 0.945 5 C -0.262 4.262 6 N -0.565 5.565 7 Si 0.939 3.061 8 H -0.204 1.204 9 H -0.200 1.200 10 H -0.216 1.216 11 C 0.020 3.980 12 C -0.016 4.016 13 O -0.311 6.311 14 C -0.031 4.031 15 C 0.023 3.977 16 H 0.089 0.911 17 C -0.179 4.179 18 C -0.182 4.182 19 C -0.042 4.042 20 O -0.323 6.323 21 H 0.011 0.989 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.125 -9.225 16.158 19.058 hybrid contribution -1.337 -0.517 0.183 1.445 sum -5.462 -9.742 16.341 19.794 Atomic orbital electron populations 1.21047 0.84308 0.99266 0.96556 1.43923 1.01225 1.01902 1.86582 1.20063 1.11422 0.92669 1.25217 0.94512 1.27379 1.03374 1.03218 0.92253 1.70874 1.36579 1.29499 1.19538 0.82877 0.73731 0.74059 0.75474 1.20430 1.19984 1.21634 1.20886 0.97338 0.86665 0.93155 1.23022 0.85601 0.97447 0.95579 1.87941 1.30147 1.87549 1.25511 1.23075 0.97786 0.98609 0.83609 1.22822 0.92387 0.89733 0.92757 0.91093 1.23122 1.01433 1.00675 0.92656 1.23256 0.99917 0.97384 0.97674 1.23658 1.01729 0.90317 0.88452 1.88533 1.82261 1.25754 1.35783 0.98899 0.93497 0.94697 0.93756 0.94483 0.91907 0.93004 0.94773 0.92909 0.92069 0.89209 0.88128 0.89780 0.87291 0.88867 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.52 10.55 127.77 1.35 7.87 16 2 N -0.61 -33.48 2.53 -726.93 -1.84 -35.33 16 3 C -0.36 -21.36 9.32 84.04 0.78 -20.58 16 4 H 0.04 2.21 7.96 -2.91 -0.02 2.19 16 5 C -0.06 -3.71 4.78 84.86 0.41 -3.30 16 6 N -0.93 -56.99 12.29 21.65 0.27 -56.73 16 7 Si 1.11 51.21 30.00 68.60 2.06 53.26 16 8 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 11 C 0.15 7.34 5.33 86.38 0.46 7.80 16 12 C 0.06 2.66 6.28 71.98 0.45 3.12 16 13 O -0.39 -16.17 9.08 -146.52 -1.33 -17.50 16 14 C 0.05 1.43 5.47 71.98 0.39 1.82 16 15 C 0.08 2.18 3.81 31.06 0.12 2.30 16 16 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 17 C -0.14 -2.39 6.54 31.86 0.21 -2.18 16 18 C -0.14 -2.02 7.16 32.05 0.23 -1.79 16 19 C 0.03 0.67 7.78 72.65 0.56 1.24 16 20 O -0.40 -12.21 11.00 -146.52 -1.61 -13.82 16 21 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 22 H 0.05 2.17 7.04 -2.39 -0.02 2.15 16 23 H 0.03 1.65 8.00 -2.39 -0.02 1.63 16 24 H 0.25 16.08 7.46 -92.70 -0.69 15.39 16 25 H 0.04 1.81 8.07 -2.38 -0.02 1.79 16 26 H 0.06 3.46 5.73 -2.39 -0.01 3.45 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.03 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.33 7.85 -2.38 -0.02 1.31 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.08 294.92 3.61 -66.47 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.10 Total: 7.35 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 4.96 Total: -3.72 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -1.58 Total: -92.05 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -2.94 Total: -31.31 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.06 Total: 53.26 kcal Total: -70.08 3.61 -66.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610161262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.535 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds