Wall clock time and date at job start Sun Mar 29 2020 21:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36941 * 120.00109 * 2 1 4 4 H 1.08001 * 120.00004 * 202.92773 * 3 2 1 5 5 C 1.38805 * 120.00274 * 22.92840 * 3 2 1 6 6 N 1.31625 * 119.99901 * 13.12135 * 5 3 2 7 7 Si 1.86793 * 120.00504 * 193.12298 * 5 3 2 8 8 H 1.48500 * 109.46892 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47575 * 119.99677 * 7 5 3 10 10 H 1.48503 * 109.47349 * 239.99958 * 7 5 3 11 11 C 1.46502 * 120.00284 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47144 * 89.99741 * 11 2 1 13 13 O 1.42901 * 109.47236 * 65.00534 * 12 11 2 14 14 C 1.42898 * 114.00563 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47349 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.86939 * 54.29683 * 15 14 13 17 17 C 1.54096 * 109.87915 * 175.30975 * 15 14 13 18 18 C 1.54808 * 104.18931 * 121.45347 * 17 15 14 19 19 C 1.54994 * 102.09223 * 20.87905 * 18 17 15 20 20 O 1.43748 * 109.87674 * 293.29362 * 15 14 13 21 21 H 1.08996 * 109.47135 * 275.12799 * 1 2 3 22 22 H 1.09003 * 109.46893 * 35.13032 * 1 2 3 23 23 H 1.09000 * 109.47101 * 155.12493 * 1 2 3 24 24 H 0.96994 * 120.00440 * 179.97438 * 6 5 3 25 25 H 1.09002 * 109.46788 * 330.00606 * 11 2 1 26 26 H 1.08993 * 109.47618 * 210.00407 * 11 2 1 27 27 H 1.08998 * 109.47663 * 305.00417 * 12 11 2 28 28 H 1.09003 * 109.47308 * 185.00391 * 12 11 2 29 29 H 1.09000 * 109.46981 * 300.00141 * 14 13 12 30 30 H 1.09003 * 109.46688 * 60.00181 * 14 13 12 31 31 H 1.09000 * 110.48974 * 240.12831 * 17 15 14 32 32 H 1.08998 * 110.48841 * 2.77636 * 17 15 14 33 33 H 1.08999 * 110.90830 * 139.07527 * 18 17 15 34 34 H 1.08998 * 110.90749 * 262.68204 * 18 17 15 35 35 H 1.09001 * 110.61770 * 81.47872 * 19 18 17 36 36 H 1.08998 * 110.62005 * 204.31840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1657 1.2229 -0.3644 5 6 1.5380 2.3406 0.4683 6 7 0.4118 2.2607 1.1449 7 14 2.3129 4.0079 0.1383 8 1 3.5664 3.8263 -0.6369 9 1 1.3670 4.8483 -0.6390 10 1 2.6217 4.6744 1.4289 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 8 3.3209 -0.7735 -2.0810 14 6 3.6249 -1.0955 -3.4397 15 6 4.5570 -0.0299 -4.0201 16 1 5.4366 0.0782 -3.3856 17 6 4.9849 -0.4285 -5.4458 18 6 4.5082 0.7503 -6.3287 19 6 4.3670 1.8950 -5.2933 20 8 3.8646 1.2263 -4.1141 21 1 -0.3633 0.0918 1.0235 22 1 -0.3633 0.8405 -0.5914 23 1 -0.3633 -0.9323 -0.4323 24 1 -0.0155 3.0674 1.4725 25 1 1.6084 -2.0282 0.5147 26 1 3.1499 -1.1382 0.5144 27 1 1.5062 -1.7558 -1.9808 28 1 2.9181 -2.6966 -1.4426 29 1 4.1150 -2.0682 -3.4816 30 1 2.7030 -1.1277 -4.0204 31 1 6.0682 -0.5345 -5.5034 32 1 4.4936 -1.3537 -5.7470 33 1 5.2549 0.9982 -7.0831 34 1 3.5480 0.5252 -6.7929 35 1 5.3362 2.3506 -5.0902 36 1 3.6579 2.6447 -5.6442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610161263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:02 Heat of formation + Delta-G solvation = -67.796314 kcal Electronic energy + Delta-G solvation = -16750.567658 eV Core-core repulsion = 14042.914009 eV Total energy + Delta-G solvation = -2707.653649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.31500 -37.17562 -35.03583 -32.09633 -31.44637 -30.27576 -28.00787 -25.63397 -24.93973 -22.92367 -21.95590 -20.88098 -20.08828 -16.71201 -16.51025 -15.90823 -15.60755 -15.43827 -14.85302 -14.14867 -13.64558 -13.59336 -13.27592 -12.83618 -12.40335 -11.91098 -11.73823 -11.58807 -11.25952 -11.09426 -10.81299 -10.73025 -10.64881 -10.63006 -10.26910 -10.16376 -9.69813 -9.60685 -9.40188 -8.89844 -8.30251 -6.50912 -5.47608 -2.91526 3.55640 3.61846 3.69879 3.98867 4.22385 4.53920 4.74196 4.82273 4.97048 5.24659 5.33536 5.47321 5.57957 5.61721 5.62499 5.64891 5.71192 5.77167 5.90012 5.98930 6.04546 6.17589 6.20200 6.31648 6.51850 6.85248 6.95157 7.14686 7.53573 7.88154 7.94827 8.16197 8.66156 9.50021 10.11852 10.59945 11.58558 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.008743 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.006323 B = 3201.685580 C = 4136.734228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.597 5.597 3 C -0.223 4.223 4 H 0.075 0.925 5 C -0.009 4.009 6 N -0.919 5.919 7 Si 0.901 3.099 8 H -0.276 1.276 9 H -0.293 1.293 10 H -0.295 1.295 11 C 0.150 3.850 12 C 0.043 3.957 13 O -0.353 6.353 14 C 0.063 3.937 15 C 0.080 3.920 16 H 0.073 0.927 17 C -0.149 4.149 18 C -0.155 4.155 19 C 0.040 3.960 20 O -0.349 6.349 21 H 0.031 0.969 22 H 0.040 0.960 23 H -0.007 1.007 24 H 0.247 0.753 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.755 -7.150 -13.315 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.353 4.353 4 H 0.092 0.908 5 C -0.205 4.205 6 N -0.567 5.567 7 Si 0.733 3.267 8 H -0.201 1.201 9 H -0.220 1.220 10 H -0.223 1.223 11 C 0.022 3.978 12 C -0.037 4.037 13 O -0.271 6.271 14 C -0.015 4.015 15 C 0.022 3.978 16 H 0.091 0.909 17 C -0.187 4.187 18 C -0.192 4.192 19 C -0.037 4.037 20 O -0.267 6.267 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.012 0.988 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.559 -6.768 -12.989 16.482 hybrid contribution 0.336 0.621 -0.581 0.914 sum 7.895 -6.148 -13.570 16.861 Atomic orbital electron populations 1.20788 0.82950 0.95131 0.99329 1.43857 1.01586 1.00805 1.85638 1.19354 0.98271 0.85064 1.32566 0.90769 1.24980 0.98137 0.98375 0.99019 1.70086 1.19971 1.26566 1.40067 0.86183 0.78822 0.84629 0.77114 1.20076 1.22013 1.22261 1.20771 0.96661 0.89194 0.91146 1.23495 0.91982 0.90213 0.97964 1.88161 1.67110 1.49435 1.22394 1.22573 0.97689 0.95269 0.85963 1.22715 0.95022 0.85048 0.95055 0.90908 1.22938 1.01700 0.99499 0.94550 1.23130 1.02130 0.95554 0.98408 1.23583 0.99527 0.95407 0.85162 1.89212 1.62600 1.30469 1.44454 0.95112 0.94134 0.98840 0.94272 0.93055 0.92717 0.94532 0.95454 0.93408 0.93502 0.90485 0.90447 0.90439 0.90548 0.92440 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.30 8.98 59.84 0.54 4.83 16 2 N -0.60 -16.22 2.90 -181.13 -0.53 -16.75 16 3 C -0.22 -6.67 9.21 -15.06 -0.14 -6.81 16 4 H 0.07 2.27 7.58 -52.49 -0.40 1.88 16 5 C -0.01 -0.28 5.10 -17.43 -0.09 -0.37 16 6 N -0.92 -28.69 10.71 55.49 0.59 -28.10 16 7 Si 0.90 23.95 29.57 -169.99 -5.03 18.92 16 8 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 9 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 10 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 11 C 0.15 3.32 6.07 -4.04 -0.02 3.29 16 12 C 0.04 0.84 6.28 37.16 0.23 1.07 16 13 O -0.35 -7.50 9.57 -37.24 -0.36 -7.86 16 14 C 0.06 1.03 5.39 37.16 0.20 1.23 16 15 C 0.08 1.23 3.70 -26.16 -0.10 1.13 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 17 C -0.15 -1.61 6.64 -25.21 -0.17 -1.78 16 18 C -0.15 -1.60 7.16 -24.73 -0.18 -1.78 16 19 C 0.04 0.54 7.72 38.21 0.29 0.83 16 20 O -0.35 -6.55 11.19 -37.24 -0.42 -6.97 16 21 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 22 H 0.04 1.15 7.34 -51.93 -0.38 0.77 16 23 H -0.01 -0.16 8.03 -51.93 -0.42 -0.58 16 24 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 26 H 0.05 1.22 8.04 -51.93 -0.42 0.81 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -34.58 295.35 -6.88 -41.46 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -6.18 Total: -6.82 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.57 Total: 1.66 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.07 Total: -44.85 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.77 Total: -14.82 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.03 Total: 18.92 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.58 -6.88 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610161263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.332 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds