Wall clock time and date at job start Sun Mar 29 2020 21:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36941 * 120.00109 * 2 1 4 4 H 1.08001 * 120.00004 * 202.92773 * 3 2 1 5 5 C 1.38805 * 120.00274 * 22.92840 * 3 2 1 6 6 N 1.31625 * 119.99901 * 13.12135 * 5 3 2 7 7 Si 1.86793 * 120.00504 * 193.12298 * 5 3 2 8 8 H 1.48500 * 109.46892 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47575 * 119.99677 * 7 5 3 10 10 H 1.48503 * 109.47349 * 239.99958 * 7 5 3 11 11 C 1.46502 * 120.00284 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47144 * 89.99741 * 11 2 1 13 13 O 1.42901 * 109.47236 * 65.00534 * 12 11 2 14 14 C 1.42898 * 114.00563 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47349 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.86939 * 54.29683 * 15 14 13 17 17 C 1.54096 * 109.87915 * 175.30975 * 15 14 13 18 18 C 1.54808 * 104.18931 * 121.45347 * 17 15 14 19 19 C 1.54994 * 102.09223 * 20.87905 * 18 17 15 20 20 O 1.43748 * 109.87674 * 293.29362 * 15 14 13 21 21 H 1.08996 * 109.47135 * 275.12799 * 1 2 3 22 22 H 1.09003 * 109.46893 * 35.13032 * 1 2 3 23 23 H 1.09000 * 109.47101 * 155.12493 * 1 2 3 24 24 H 0.96994 * 120.00440 * 179.97438 * 6 5 3 25 25 H 1.09002 * 109.46788 * 330.00606 * 11 2 1 26 26 H 1.08993 * 109.47618 * 210.00407 * 11 2 1 27 27 H 1.08998 * 109.47663 * 305.00417 * 12 11 2 28 28 H 1.09003 * 109.47308 * 185.00391 * 12 11 2 29 29 H 1.09000 * 109.46981 * 300.00141 * 14 13 12 30 30 H 1.09003 * 109.46688 * 60.00181 * 14 13 12 31 31 H 1.09000 * 110.48974 * 240.12831 * 17 15 14 32 32 H 1.08998 * 110.48841 * 2.77636 * 17 15 14 33 33 H 1.08999 * 110.90830 * 139.07527 * 18 17 15 34 34 H 1.08998 * 110.90749 * 262.68204 * 18 17 15 35 35 H 1.09001 * 110.61770 * 81.47872 * 19 18 17 36 36 H 1.08998 * 110.62005 * 204.31840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1657 1.2229 -0.3644 5 6 1.5380 2.3406 0.4683 6 7 0.4118 2.2607 1.1449 7 14 2.3129 4.0079 0.1383 8 1 3.5664 3.8263 -0.6369 9 1 1.3670 4.8483 -0.6390 10 1 2.6217 4.6744 1.4289 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 8 3.3209 -0.7735 -2.0810 14 6 3.6249 -1.0955 -3.4397 15 6 4.5570 -0.0299 -4.0201 16 1 5.4366 0.0782 -3.3856 17 6 4.9849 -0.4285 -5.4458 18 6 4.5082 0.7503 -6.3287 19 6 4.3670 1.8950 -5.2933 20 8 3.8646 1.2263 -4.1141 21 1 -0.3633 0.0918 1.0235 22 1 -0.3633 0.8405 -0.5914 23 1 -0.3633 -0.9323 -0.4323 24 1 -0.0155 3.0674 1.4725 25 1 1.6084 -2.0282 0.5147 26 1 3.1499 -1.1382 0.5144 27 1 1.5062 -1.7558 -1.9808 28 1 2.9181 -2.6966 -1.4426 29 1 4.1150 -2.0682 -3.4816 30 1 2.7030 -1.1277 -4.0204 31 1 6.0682 -0.5345 -5.5034 32 1 4.4936 -1.3537 -5.7470 33 1 5.2549 0.9982 -7.0831 34 1 3.5480 0.5252 -6.7929 35 1 5.3362 2.3506 -5.0902 36 1 3.6579 2.6447 -5.6442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610161263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:02 Heat of formation + Delta-G solvation = -91.843016 kcal Electronic energy + Delta-G solvation = -16751.610401 eV Core-core repulsion = 14042.914009 eV Total energy + Delta-G solvation = -2708.696392 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44109 -38.72514 -37.00671 -33.52917 -33.08508 -31.61690 -29.73487 -27.85880 -26.11928 -24.81426 -22.96218 -22.22363 -21.71091 -18.70489 -17.88596 -17.26795 -16.95767 -16.75755 -16.57822 -15.83460 -15.28266 -15.09100 -14.76069 -14.49868 -14.06866 -13.48979 -13.05351 -12.92400 -12.73734 -12.71853 -12.56639 -12.28364 -12.13091 -12.07287 -11.99557 -11.83415 -11.73460 -11.52836 -10.60655 -10.58128 -10.35675 -8.69806 -7.76332 -5.22224 1.42240 1.43988 1.57784 2.55530 2.84671 3.04292 3.36986 3.64093 3.75407 3.91430 3.98392 4.17780 4.26371 4.41866 4.45883 4.52055 4.60319 4.63585 4.68084 4.80015 4.84876 4.86404 4.88991 4.96676 5.08047 5.17198 5.20757 5.37998 5.70177 5.78732 6.05563 6.40795 6.57782 7.23683 7.95281 8.36389 9.27432 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.008743 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.006323 B = 3201.685580 C = 4136.734228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.615 5.615 3 C -0.225 4.225 4 H 0.061 0.939 5 C -0.063 4.063 6 N -0.946 5.946 7 Si 0.961 3.039 8 H -0.276 1.276 9 H -0.293 1.293 10 H -0.288 1.288 11 C 0.143 3.857 12 C 0.051 3.949 13 O -0.395 6.395 14 C 0.059 3.941 15 C 0.070 3.930 16 H 0.061 0.939 17 C -0.138 4.138 18 C -0.145 4.145 19 C 0.027 3.973 20 O -0.404 6.404 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.032 0.968 24 H 0.245 0.755 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -8.446 -15.007 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.338 5.338 3 C -0.356 4.356 4 H 0.079 0.921 5 C -0.256 4.256 6 N -0.595 5.595 7 Si 0.791 3.209 8 H -0.201 1.201 9 H -0.220 1.220 10 H -0.215 1.215 11 C 0.017 3.983 12 C -0.028 4.028 13 O -0.315 6.315 14 C -0.018 4.018 15 C 0.012 3.988 16 H 0.079 0.921 17 C -0.176 4.176 18 C -0.182 4.182 19 C -0.049 4.049 20 O -0.324 6.324 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.784 -8.101 -14.700 18.944 hybrid contribution 0.003 0.959 -0.079 0.962 sum 8.787 -7.142 -14.779 18.618 Atomic orbital electron populations 1.20533 0.82905 0.95706 0.97658 1.44090 1.01979 1.01857 1.85915 1.19432 0.97863 0.86655 1.31604 0.92141 1.25666 0.98999 1.01423 0.99549 1.70221 1.21097 1.27014 1.41181 0.85264 0.77861 0.80857 0.76966 1.20062 1.21989 1.21538 1.21048 0.96098 0.87726 0.93442 1.23274 0.92288 0.91636 0.95570 1.88102 1.67430 1.50981 1.24951 1.22841 0.98087 0.97342 0.83541 1.22936 0.94090 0.84041 0.97753 0.92078 1.22928 1.03258 1.00136 0.91236 1.23113 1.03225 0.93853 0.98007 1.23849 0.99761 0.96506 0.84792 1.89147 1.63961 1.32312 1.46944 0.97346 0.97324 0.94935 0.94600 0.90371 0.93615 0.94958 0.91152 0.89856 0.94006 0.88182 0.88786 0.87401 0.90439 0.91660 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.39 8.98 127.77 1.15 10.53 16 2 N -0.62 -33.55 2.90 -726.97 -2.11 -35.66 16 3 C -0.22 -13.69 9.21 84.03 0.77 -12.91 16 4 H 0.06 3.80 7.58 -2.91 -0.02 3.77 16 5 C -0.06 -3.89 5.10 84.86 0.43 -3.46 16 6 N -0.95 -60.18 10.71 21.65 0.23 -59.95 16 7 Si 0.96 50.30 29.57 68.60 2.03 52.33 16 8 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 9 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 10 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 11 C 0.14 6.13 6.07 86.38 0.52 6.66 16 12 C 0.05 1.88 6.28 71.98 0.45 2.33 16 13 O -0.40 -16.51 9.57 -147.06 -1.41 -17.92 16 14 C 0.06 1.82 5.39 71.98 0.39 2.21 16 15 C 0.07 2.07 3.70 30.97 0.11 2.18 16 16 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 17 C -0.14 -2.55 6.64 31.58 0.21 -2.34 16 18 C -0.14 -2.59 7.16 31.89 0.23 -2.36 16 19 C 0.03 0.70 7.72 72.66 0.56 1.26 16 20 O -0.40 -15.26 11.19 -147.06 -1.65 -16.91 16 21 H 0.01 0.47 7.34 -2.39 -0.02 0.46 16 22 H 0.01 0.47 7.34 -2.39 -0.02 0.45 16 23 H 0.03 1.43 8.03 -2.39 -0.02 1.42 16 24 H 0.24 15.06 8.31 -92.71 -0.77 14.28 16 25 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 26 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.44 7.70 -2.39 -0.02 1.42 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -76.28 295.35 2.95 -73.33 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: 1.02 Total: 0.68 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.83 Total: 4.10 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -1.88 Total: -95.61 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -3.05 Total: -34.82 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.03 Total: 52.33 kcal Total: -76.28 2.95 -73.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610161263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.516 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds