Wall clock time and date at job start Sun Mar 29 2020 21:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99823 * 2 1 4 4 C 1.53006 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.50429 * 304.91987 * 4 3 2 6 6 C 1.53096 * 109.50710 * 184.78470 * 4 3 2 7 7 N 1.47009 * 109.25378 * 183.21822 * 6 4 3 8 8 C 1.46910 * 110.99846 * 182.39048 * 7 6 4 9 9 C 1.52999 * 109.46994 * 170.31819 * 8 7 6 10 10 C 1.50708 * 109.46837 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99752 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99793 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00073 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99735 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47235 * 60.00426 * 14 12 10 16 16 H 1.48504 * 109.47279 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47235 * 300.00391 * 14 12 10 18 18 C 1.47014 * 110.75746 * 58.61836 * 7 6 4 19 19 C 1.53098 * 109.25384 * 301.37965 * 18 7 6 20 20 O 1.43013 * 109.50291 * 65.00002 * 4 3 2 21 21 H 1.09007 * 109.47137 * 299.99376 * 1 2 3 22 22 H 1.08997 * 109.47704 * 59.99595 * 1 2 3 23 23 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46868 * 60.00838 * 3 2 1 25 25 H 1.08992 * 109.47403 * 300.00259 * 3 2 1 26 26 H 1.08999 * 109.50455 * 303.15203 * 6 4 3 27 27 H 1.08999 * 109.50573 * 63.28357 * 6 4 3 28 28 H 1.08996 * 109.46835 * 290.32315 * 8 7 6 29 29 H 1.08998 * 109.46466 * 50.32053 * 8 7 6 30 30 H 1.08994 * 109.47222 * 299.99928 * 9 8 7 31 31 H 1.08998 * 109.47367 * 60.00204 * 9 8 7 32 32 H 0.96998 * 119.99554 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.50922 * 181.44430 * 18 7 6 34 34 H 1.09001 * 109.54335 * 61.33548 * 18 7 6 35 35 H 1.08994 * 109.51024 * 296.90964 * 19 18 7 36 36 H 1.09006 * 109.50341 * 176.77753 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8521 0.5696 0.8416 6 6 4.1586 2.5780 0.1197 7 7 5.6220 2.4629 0.0410 8 6 6.2630 3.7740 0.2094 9 6 7.7737 3.5871 0.3634 10 6 8.4311 4.9321 0.5368 11 1 7.8313 5.8302 0.5375 12 6 9.7982 5.0158 0.6956 13 7 10.5284 3.9221 0.6952 14 14 10.6131 6.6830 0.9097 15 1 10.0699 7.3475 2.1215 16 1 12.0794 6.5017 1.0594 17 1 10.3380 7.5252 -0.2820 18 6 6.0280 1.8369 -1.2257 19 6 5.3861 0.4511 -1.3326 20 8 3.9659 0.5794 -1.2227 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8463 0.8901 25 1 1.6885 1.8464 -0.8899 26 1 3.7988 3.2090 -0.6930 27 1 3.8791 3.0203 1.0759 28 1 6.0606 4.3923 -0.6651 29 1 5.8646 4.2615 1.0991 30 1 7.9760 2.9688 1.2379 31 1 8.1721 3.0995 -0.5263 32 1 11.4902 3.9811 0.8066 33 1 7.1133 1.7383 -1.2517 34 1 5.6988 2.4559 -2.0604 35 1 5.7574 -0.1850 -0.5291 36 1 5.6380 0.0066 -2.2955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610215603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:13 Heat of formation + Delta-G solvation = -92.838464 kcal Electronic energy + Delta-G solvation = -16273.816858 eV Core-core repulsion = 13565.077300 eV Total energy + Delta-G solvation = -2708.739558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.51614 -37.68096 -35.66613 -33.00221 -32.06348 -29.95793 -28.09725 -26.58445 -25.02645 -23.63406 -22.61302 -20.47789 -19.85420 -16.77679 -16.53270 -16.43769 -15.83087 -15.38217 -14.95430 -14.75418 -14.55334 -14.00175 -13.85471 -13.35692 -12.62787 -12.46523 -12.18084 -11.78701 -11.66303 -11.40401 -11.10078 -10.96183 -10.88872 -10.59337 -10.32681 -9.90860 -9.80666 -9.61251 -9.20026 -9.14906 -8.35091 -7.84507 -6.01519 -4.04329 3.32246 3.36762 3.38803 3.54642 3.85018 4.33797 4.50708 4.95508 5.06408 5.14994 5.18451 5.24040 5.31286 5.34292 5.37377 5.47566 5.49043 5.58242 5.71096 5.77588 6.01384 6.13292 6.22237 6.33355 6.42656 6.90305 7.01479 7.33419 7.38257 7.47132 7.73609 7.84929 8.04187 8.40193 9.02368 9.59408 11.09820 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.062795 B = 0.004631 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.790405 B = 6044.922628 C = 6335.115748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.071 3.929 4 C 0.096 3.904 5 H 0.074 0.926 6 C 0.026 3.974 7 N -0.536 5.536 8 C 0.063 3.937 9 C 0.028 3.972 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.017 3.983 19 C 0.065 3.935 20 O -0.379 6.379 21 H 0.039 0.961 22 H 0.040 0.960 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.017 0.983 32 H 0.261 0.739 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 -5.728 -2.184 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.006 4.006 4 C 0.038 3.962 5 H 0.092 0.908 6 C -0.103 4.103 7 N -0.261 5.261 8 C -0.063 4.063 9 C -0.009 4.009 10 C -0.563 4.563 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.112 4.112 19 C -0.012 4.012 20 O -0.298 6.298 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.959 -6.317 -1.927 17.272 hybrid contribution 0.275 1.848 -0.345 1.900 sum -15.684 -4.469 -2.272 16.466 Atomic orbital electron populations 1.22732 0.81335 1.02661 0.99803 1.87947 1.19317 1.27490 1.95362 1.22517 0.92159 0.85143 1.00807 1.22075 0.91762 0.93801 0.88551 0.90810 1.22628 0.90135 0.95825 1.01686 1.62309 1.04821 1.25424 1.33507 1.22378 0.98748 0.86215 0.98986 1.19093 0.87045 0.97031 0.97743 1.21142 0.92187 0.92838 1.50128 0.92836 1.24990 0.97459 0.96513 0.95301 1.69959 1.05911 1.27279 1.50032 0.86642 0.78270 0.84305 0.78676 1.20213 1.21243 1.20297 1.22821 1.02384 0.95312 0.90651 1.22702 0.80253 0.96229 1.02045 1.87969 1.22251 1.81339 1.38270 0.94216 0.94160 0.89698 0.91739 0.92593 0.94473 0.89895 0.96028 0.91901 0.95641 0.96459 0.92892 0.88416 0.94598 0.92289 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.00 10.67 -39.95 -0.43 -5.42 16 3 C 0.07 0.85 5.61 37.16 0.21 1.06 16 4 C 0.10 1.40 3.09 -26.68 -0.08 1.32 16 5 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 6 C 0.03 0.40 4.93 -3.71 -0.02 0.38 16 7 N -0.54 -9.97 4.73 -234.31 -1.11 -11.08 16 8 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.02 0.29 5.43 -3.71 -0.02 0.27 16 19 C 0.06 0.98 7.01 37.21 0.26 1.24 16 20 O -0.38 -6.12 10.44 -39.95 -0.42 -6.54 16 21 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 28 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.47 6.51 -51.93 -0.34 0.13 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.10 1.84 6.37 -51.93 -0.33 1.51 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -31.39 294.16 -7.03 -38.42 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.12 Total: -4.37 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 0.89 Total: -5.97 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.37 Total: -37.13 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.84 Total: -11.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.39 -7.03 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610215603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.421 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds