Wall clock time and date at job start Sun Mar 29 2020 21:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99823 * 2 1 4 4 C 1.53006 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.50429 * 304.91987 * 4 3 2 6 6 C 1.53096 * 109.50710 * 184.78470 * 4 3 2 7 7 N 1.47009 * 109.25378 * 183.21822 * 6 4 3 8 8 C 1.46910 * 110.99846 * 182.39048 * 7 6 4 9 9 C 1.52999 * 109.46994 * 170.31819 * 8 7 6 10 10 C 1.50708 * 109.46837 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99752 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99793 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00073 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99735 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47235 * 60.00426 * 14 12 10 16 16 H 1.48504 * 109.47279 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47235 * 300.00391 * 14 12 10 18 18 C 1.47014 * 110.75746 * 58.61836 * 7 6 4 19 19 C 1.53098 * 109.25384 * 301.37965 * 18 7 6 20 20 O 1.43013 * 109.50291 * 65.00002 * 4 3 2 21 21 H 1.09007 * 109.47137 * 299.99376 * 1 2 3 22 22 H 1.08997 * 109.47704 * 59.99595 * 1 2 3 23 23 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46868 * 60.00838 * 3 2 1 25 25 H 1.08992 * 109.47403 * 300.00259 * 3 2 1 26 26 H 1.08999 * 109.50455 * 303.15203 * 6 4 3 27 27 H 1.08999 * 109.50573 * 63.28357 * 6 4 3 28 28 H 1.08996 * 109.46835 * 290.32315 * 8 7 6 29 29 H 1.08998 * 109.46466 * 50.32053 * 8 7 6 30 30 H 1.08994 * 109.47222 * 299.99928 * 9 8 7 31 31 H 1.08998 * 109.47367 * 60.00204 * 9 8 7 32 32 H 0.96998 * 119.99554 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.50922 * 181.44430 * 18 7 6 34 34 H 1.09001 * 109.54335 * 61.33548 * 18 7 6 35 35 H 1.08994 * 109.51024 * 296.90964 * 19 18 7 36 36 H 1.09006 * 109.50341 * 176.77753 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8521 0.5696 0.8416 6 6 4.1586 2.5780 0.1197 7 7 5.6220 2.4629 0.0410 8 6 6.2630 3.7740 0.2094 9 6 7.7737 3.5871 0.3634 10 6 8.4311 4.9321 0.5368 11 1 7.8313 5.8302 0.5375 12 6 9.7982 5.0158 0.6956 13 7 10.5284 3.9221 0.6952 14 14 10.6131 6.6830 0.9097 15 1 10.0699 7.3475 2.1215 16 1 12.0794 6.5017 1.0594 17 1 10.3380 7.5252 -0.2820 18 6 6.0280 1.8369 -1.2257 19 6 5.3861 0.4511 -1.3326 20 8 3.9659 0.5794 -1.2227 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8463 0.8901 25 1 1.6885 1.8464 -0.8899 26 1 3.7988 3.2090 -0.6930 27 1 3.8791 3.0203 1.0759 28 1 6.0606 4.3923 -0.6651 29 1 5.8646 4.2615 1.0991 30 1 7.9760 2.9688 1.2379 31 1 8.1721 3.0995 -0.5263 32 1 11.4902 3.9811 0.8066 33 1 7.1133 1.7383 -1.2517 34 1 5.6988 2.4559 -2.0604 35 1 5.7574 -0.1850 -0.5291 36 1 5.6380 0.0066 -2.2955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610215603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:13 Heat of formation + Delta-G solvation = -115.679804 kcal Electronic energy + Delta-G solvation = -16274.807333 eV Core-core repulsion = 13565.077300 eV Total energy + Delta-G solvation = -2709.730032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77384 -38.63738 -37.15176 -35.04762 -33.24484 -31.81683 -29.31633 -27.76703 -26.39045 -25.15189 -24.01626 -22.00851 -21.33869 -18.64856 -17.72938 -17.43051 -17.20588 -16.56086 -16.42668 -16.16430 -15.94318 -15.44207 -15.07745 -14.80096 -14.27501 -14.11210 -13.36720 -13.23546 -12.98289 -12.83288 -12.61560 -12.48860 -12.40835 -12.01612 -11.86641 -11.63177 -11.34635 -11.28111 -10.64325 -10.59363 -10.53260 -9.32895 -8.20445 -6.32062 1.40619 1.43682 1.51627 2.38862 2.59372 2.70866 3.10540 3.13082 3.91312 3.98749 4.02706 4.06657 4.18058 4.30564 4.39681 4.50115 4.53806 4.57282 4.59576 4.62666 4.67148 4.83932 4.86802 4.89702 4.97632 5.05304 5.43065 5.61403 5.74735 6.00550 6.09088 6.13713 6.26915 6.28272 6.84519 7.37113 8.91478 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.062795 B = 0.004631 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.790405 B = 6044.922628 C = 6335.115748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.075 3.925 4 C 0.095 3.905 5 H 0.064 0.936 6 C 0.029 3.971 7 N -0.550 5.550 8 C 0.080 3.920 9 C 0.036 3.964 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.018 3.982 19 C 0.071 3.929 20 O -0.389 6.389 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.099 0.901 28 H 0.022 0.978 29 H 0.070 0.930 30 H -0.007 1.007 31 H -0.005 1.005 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 -4.769 -2.146 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.002 4.002 4 C 0.037 3.963 5 H 0.082 0.918 6 C -0.099 4.099 7 N -0.275 5.275 8 C -0.047 4.047 9 C -0.002 4.002 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.110 4.110 19 C -0.006 4.006 20 O -0.308 6.308 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.012 0.988 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.448 -5.362 -1.891 18.351 hybrid contribution 0.686 1.481 -0.355 1.671 sum -16.762 -3.881 -2.246 17.351 Atomic orbital electron populations 1.22942 0.79247 1.03866 1.00995 1.87893 1.21642 1.28011 1.95625 1.22504 0.90135 0.85265 1.02291 1.22175 0.93681 0.92770 0.87677 0.91768 1.22694 0.87643 0.96777 1.02825 1.62205 1.07112 1.23848 1.34335 1.22015 0.95714 0.87711 0.99288 1.18920 0.90500 0.95557 0.95175 1.21590 0.92935 0.93871 1.50119 0.92078 1.25963 0.98216 1.00722 0.94726 1.70100 1.06285 1.29836 1.50866 0.85478 0.77057 0.79176 0.79185 1.19065 1.20861 1.19197 1.22792 1.01255 0.96743 0.90210 1.22708 0.79949 0.94619 1.03312 1.87968 1.22304 1.81467 1.39090 0.92630 0.93298 0.88624 0.89273 0.91997 0.93849 0.88243 0.95983 0.91189 0.98844 0.98628 0.92724 0.90685 0.94553 0.92602 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -9.97 10.67 -144.47 -1.54 -11.51 16 3 C 0.07 1.63 5.61 71.98 0.40 2.04 16 4 C 0.10 2.63 3.09 30.63 0.09 2.72 16 5 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 6 C 0.03 0.84 4.93 86.31 0.43 1.26 16 7 N -0.55 -20.37 4.73 -895.22 -4.23 -24.60 16 8 C 0.08 3.39 4.90 86.30 0.42 3.81 16 9 C 0.04 1.92 4.90 29.85 0.15 2.07 16 10 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 0.11 5.46 84.65 0.46 0.57 16 13 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 14 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 C 0.02 0.64 5.43 86.31 0.47 1.11 16 19 C 0.07 2.11 7.01 72.01 0.50 2.61 16 20 O -0.39 -12.07 10.44 -144.47 -1.51 -13.57 16 21 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 2.55 8.09 -2.39 -0.02 2.53 16 28 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 29 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.00 -0.26 6.51 -2.39 -0.02 -0.28 16 32 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.07 2.95 6.37 -2.39 -0.02 2.93 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -67.32 294.16 0.46 -66.86 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.03 Total: 6.44 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.41 Total: -13.13 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.95 Total: -81.22 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -3.05 Total: -25.08 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.32 0.46 -66.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610215603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.823 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds